Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module subset ontology An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms. http://purl.obolibrary.org/obo/APOLLO_SV_00000114 infection http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction process of infection A reproduction of a pathogen organism of a particular biological taxon in a tissue of a host organism from another taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000157 population infection and immunity census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census PII Census A census that is the result of a population infection survey and a population immunity survey. http://purl.obolibrary.org/obo/APOLLO_SV_00000164 agent-level ecosystem data generation http://purl.obolibrary.org/obo/APOLLO_SV_00000796 dataset creating synthetic ecosystem generating A planned process that has one or more synthetic ecosystem datasets as output. http://purl.obolibrary.org/obo/APOLLO_SV_00000298 epidemic http://purl.obolibrary.org/obo/APOLLO_SV_00000306 infection in ecosystem epidemic of infection A process whose beginning is demarcated by accelerating infection acquisition by one or more host species of a particular pathogen in a particular location and whose end is demarcated by the time when the rate of infection acquisition becomes constant. http://purl.obolibrary.org/obo/APOLLO_SV_00000342 ectosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000341 intimate agonism ectoparasitism An intimate agonism in which the harm is not fatal to the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000343 facultative ectosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000342 ectosymbiotic parasitism facultative ectoparasitism An ectosymbiotic parasitism that realizes some facultative parasite role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000344 obligatory ectosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000342 ectosymbiotic parasitism obligatory ectoparasitism An ectosymbiotic parasitism that realizes a biological function that inheres in some proper part of the parasite. http://purl.obolibrary.org/obo/APOLLO_SV_00000345 ectosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000341 intimate agonism ectoparasitoidism An intimate agonism in which the harm is fatal to the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000346 facultative ectosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000345 ectosymbiotic parasitoidism facultative ectoparasitoidism An ectosymbiotic parasitoidism that realizes some facultative parasitoid role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000347 obligatory ectosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000345 ectosymbiotic parasitoidism obligatory ectoparasitoidism An ectosymbiotic parasitoidism that realizes a biological function that inheres in some proper part of the parasitoid. http://purl.obolibrary.org/obo/APOLLO_SV_00000348 ectosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis ectocommensalism An ectosymbiosis that results in benefit to one participating organism and neither harm nor benefit to the other participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000349 facultative ectosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000348 ectosymbiotic commensalism facultative ectocommensalism An ectosymbiotic commensalism that realizes some facultative commensal role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000350 obligatory ectosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000348 ectosymbiotic commensalism obligatory ectocommensalism An ectosymbiotic commensalism that realizes a biological function that inheres in some proper part of the commensal organism that benefits. http://purl.obolibrary.org/obo/APOLLO_SV_00000351 ectosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis ectomutualism An ectosymbiosis that results in benefit to all participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000352 facultative ectosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000351 ectosymbiotic mutualism facultative ectomutualism An ectosymbiotic mutualism that realizes some facultative mutualist role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000353 obligatory ectosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000351 ectosymbiotic mutualism obligatory ectomutualism An ectosymbiotic mutualism that realizes a biological function that inheres in some proper part of at least one of the organisms participating. http://purl.obolibrary.org/obo/APOLLO_SV_00000355 endosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000354 endosymbiosis endoparasitism An endosymbiosis that results in benefit to the parasite and harm to the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000359 facultative endosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000355 endosymbiotic parasitism facultative endoparasitism An endosymbiotic parasitism that realizes some facultative parasite role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000360 obligatory endosymbiotic parasitism http://purl.obolibrary.org/obo/APOLLO_SV_00000355 endosymbiotic parasitism obligatory endoparasitism An endosymbiotic parasitism that realizes a biological function that inheres in some proper part of the parasite. http://purl.obolibrary.org/obo/APOLLO_SV_00000361 endosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000354 endosymbiosis endoparasitoidism An endosymbiosis that results in benefit to the parasitoid and is fatal to the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000362 facultative endosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000361 endosymbiotic parasitoidism facultative endoparasitoidism An endosymbiotic parasitoidism that realizes some facultative parasitoid role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000363 obligatory endosymbiotic parasitoidism http://purl.obolibrary.org/obo/APOLLO_SV_00000361 endosymbiotic parasitoidism obligatory endoparasitoidism An endosymbiotic parasitoidism that realizes a biological function that inheres in some proper part of the parasitoid. http://purl.obolibrary.org/obo/APOLLO_SV_00000364 endosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000354 endosymbiosis endocommensalism An endosymbiosis that results in benefit to one participating organism and neither harm nor benefit to the other participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000365 facultative endosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000364 endosymbiotic commensalism facultative endocommensalism An endosymbiotic commensalism that realizes some facultative commensal role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000366 obligatory endosymbiotic commensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000364 endosymbiotic commensalism obligatory endocommensalism An endosymbiotic commensalism that realizes a biological function that inheres in some proper part of the commensal organism that benefits. http://purl.obolibrary.org/obo/APOLLO_SV_00000367 endosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000354 endosymbiosis endomutualism An endosymbiosis that results in benefit to all participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000368 facultative endosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000367 endosymbiotic mutualism facultative endomutualism An endosymbiotic mutualism that realizes some facultative mutualist role inhering in an organism that is also realized by a bodily benefit to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000369 obligatory endosymbiotic mutualism http://purl.obolibrary.org/obo/APOLLO_SV_00000367 endosymbiotic mutualism obligatory endomutualism An endosymbiotic mutualism that realizes a biological function that inheres in some proper part of at least one of the organisms participating. http://purl.obolibrary.org/obo/APOLLO_SV_00000400 epidemic interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region epidemic period The temporal interval occupied by an epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000405 potentially infectious contacting http://purl.obolibrary.org/obo/GO_0008150 biological process potentially infectious contact A biological process that brings the organism into sufficiently close physical proximity to a pathogen population, either in or on a contaminated thing or an infectious host, such that the organism is likely but not certain to acquire an infection with the pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000406 potentially infectious contact role http://purl.obolibrary.org/obo/BFO_0000023 role infectious contact role A role borne by an organism that is realized in a potentially infectious contact process. http://purl.obolibrary.org/obo/APOLLO_SV_00000448 standard deviation http://purl.obolibrary.org/obo/IAO_0000027 data item σ A data item that specifies the dispersion of values around some parameter in a set of data, and whose values are standardized to express the same unit of measure as the parameter of interest. http://purl.obolibrary.org/obo/APOLLO_SV_00000521 infection acquisition from vertical transmission http://purl.obolibrary.org/obo/APOLLO_SV_00000265 infection acquisition from infectious host infection acquisition from mother-to-child transmission An infection acquisition from infectious host by an embryo, fetus, or baby from its infectious mother while in utero, in egg at any point prior to hatching (even after laying), or during childbirth. http://purl.obolibrary.org/obo/APOLLO_SV_00000797 creating a copyright license http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process copyright license creation A planned process that has a copyright license as its specified output. http://purl.obolibrary.org/obo/APOLLO_SV_00000574 acute respiratory illness http://purl.obolibrary.org/obo/OGMS_0000027 clinical phenotype influenza-like illness A clinical phenotype that is causally preceded by some infection or some adverse drug reaction; and that is accompanied by a fever greater than or equal to 37.8 degrees Celsius, and a cough or sore throat. http://purl.obolibrary.org/obo/IAO_0000648 zone improvement plan code http://purl.obolibrary.org/obo/IAO_0000646 postal code ZIP code A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes. http://purl.obolibrary.org/obo/APOLLO_SV_00000616 wastewater disease surveillance http://purl.obolibrary.org/obo/APOLLO_SV_00000545 disease surveillance sewage disease surveillance A disease surveillance that detects evidence of the presence of pathogens in sewage. http://purl.obolibrary.org/obo/APOLLO_SV_00000618 wastewater surveillance data set http://purl.obolibrary.org/obo/APOLLO_SV_00000554 disease surveillance data sewage surveillance data A disease surveillance data set that is about some wastewater disease surveillance. http://purl.obolibrary.org/obo/APOLLO_SV_00000593 abiotic ecosystem data set http://purl.obolibrary.org/obo/IAO_0000100 data set abiotic ecosystem dataset A data set that is about some abiotic ecosystem or abiotic ecosystem element. http://purl.obolibrary.org/obo/IAO_0000580 looking up a centrally registered identifier http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process looking up a CRID A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity goal specification A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved. http://purl.obolibrary.org/obo/IAO_0000009 data item label http://purl.obolibrary.org/obo/IAO_0000030 information content entity datum label An information content entity that is part of some data item and is used to partially define the denotation of that data item. http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity data An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. http://purl.obolibrary.org/obo/IAO_0000035 obsolete_study interpretation http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class conclusion A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses http://purl.obolibrary.org/obo/IAO_0000132 lot number http://purl.obolibrary.org/obo/IAO_0000028 symbol batch number A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example, a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern of other information objects, such as bar codes, numerals, or patterns of dots. http://purl.obolibrary.org/obo/IAO_0000184 scatter plot http://purl.obolibrary.org/obo/IAO_0000038 graph scattergraph A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis. http://purl.obolibrary.org/obo/IAO_0000300 textual entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity text A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc. http://purl.obolibrary.org/obo/IAO_0000311 publication http://purl.obolibrary.org/obo/IAO_0000310 document published document A document that is the output of a publishing process. http://purl.obolibrary.org/obo/IAO_0000312 publication about an investigation http://purl.obolibrary.org/obo/IAO_0000311 publication scientific publication A publication that is about an investigation http://purl.obolibrary.org/obo/IAO_0000315 abstract http://purl.obolibrary.org/obo/IAO_0000314 document part precis A summary of the entire document that is substantially smaller than the document it summarizes. It is about the document it summarizes. http://purl.obolibrary.org/obo/IAO_0000316 introduction to a publication about an investigation http://purl.obolibrary.org/obo/IAO_0000314 document part overview A part of a publication about an investigation that is about the objective specification (why the investigation is being done) http://purl.obolibrary.org/obo/IAO_0000317 methods section http://purl.obolibrary.org/obo/IAO_0000314 document part experimental methods A part of a publication about an investigation that is about the study design of the investigation http://purl.obolibrary.org/obo/IAO_0000318 results section http://purl.obolibrary.org/obo/IAO_0000314 document part results A part of a publication about an investigation that is about a study design execution http://purl.obolibrary.org/obo/IAO_0000319 discussion section of a publication about an investigation http://purl.obolibrary.org/obo/IAO_0000314 document part discussions A part of a publication about an investigation that is about the study interpretation of the investigation http://purl.obolibrary.org/obo/IAO_0000320 references section http://purl.obolibrary.org/obo/IAO_0000314 document part reference list A part of a document that has citations as parts http://purl.obolibrary.org/obo/IAO_0000323 author contributions section http://purl.obolibrary.org/obo/IAO_0000314 document part contributorship A part of a publication that is about the specific contributions of each author http://purl.obolibrary.org/obo/IAO_0000324 acknowledgements section http://purl.obolibrary.org/obo/IAO_0000314 document part acknowledgment Part of a publication that is about the contributions of people or institutions other than the authors. http://purl.obolibrary.org/obo/IAO_0000325 footnote http://purl.obolibrary.org/obo/IAO_0000314 document part footnotes A part of a document that is about a specific other part of the document. Usually footnotes are spatially segregated from the rest of the document. http://purl.obolibrary.org/obo/IAO_0000326 supplementary material to a document http://purl.obolibrary.org/obo/IAO_0000314 document part supplementary materials A part of a document that is segregated from the rest of the document due to its size http://purl.obolibrary.org/obo/IAO_0000573 line graph http://purl.obolibrary.org/obo/IAO_0000038 graph line chart A line graph is a type of graph created by connecting a series of data points together with a line. http://purl.obolibrary.org/obo/IAO_0000574 assigning a centrally registered identifier http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process assigning a CRID A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity http://purl.obolibrary.org/obo/IAO_0000575 associating information with a centrally registered identifier in its registry http://purl.obolibrary.org/obo/OBI_0000011 planned process associating information with a CRID in the CRID registry A planned process in which a CRID registry associates an information content entity with a CRID symbol http://purl.obolibrary.org/obo/IAO_0000577 centrally registered identifier symbol http://purl.obolibrary.org/obo/IAO_0000028 symbol CRID symbol A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry. http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier CRID An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs. http://purl.obolibrary.org/obo/IAO_0000579 centrally registered identifier registry http://purl.obolibrary.org/obo/IAO_0020020 code set CRID registry A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process. http://purl.obolibrary.org/obo/IAO_0000584 time sampled measurement data set http://purl.obolibrary.org/obo/IAO_0000100 data set experimental time series A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time. http://purl.obolibrary.org/obo/OBI_0000576 scattered molecular aggregate http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate Collective A material entity that consists of all the molecules of a specific type that are located in some bounded region and which is part of a more massive material entity that has parts that are other such aggregates http://purl.obolibrary.org/obo/OBI_0000658 data representational model http://purl.obolibrary.org/obo/IAO_0000033 directive information entity data structure specification Data representational model is an information content entity of the relationships between data items. A data representational model is encoded in a data format specification such as for cytoscape or biopax. http://purl.obolibrary.org/obo/OBI_0000674 center value http://purl.obolibrary.org/obo/IAO_0000027 data item median A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data. http://purl.obolibrary.org/obo/OBI_0000679 average value http://purl.obolibrary.org/obo/IAO_0000027 data item arithmetic mean A data item that is produced as the output of an averaging data transformation and represents the average value of the input data. http://purl.obolibrary.org/obo/OBI_0000968 device http://purl.obolibrary.org/obo/OBI_0000047 processed material instrument A device is a processed material which is designed to perform some function or functions http://purl.obolibrary.org/obo/OBI_0001620 latitude coordinate measurement datum http://purl.obolibrary.org/obo/GEO_000000787 geodetic coordinate measurement datum latitude A measurement datum that is the measure of the latitude coordinate of a site. http://purl.obolibrary.org/obo/OBI_0001621 longitude coordinate measurement datum http://purl.obolibrary.org/obo/GEO_000000787 geodetic coordinate measurement datum longitude A measurement datum that is the measure of the longitude coordinate of a site. http://purl.obolibrary.org/obo/OBI_0002110 digital object identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier DOI A centrally registered identifier symbol used to uniquely identify objects given by International DOI Foundation. The DOI system is particularly used for electronic documents such as journal articles. http://purl.obolibrary.org/obo/OBI_0200000 data transformation http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process data processing A completely executed planned process that produces output data from input data. http://purl.obolibrary.org/obo/OBI_0500000 study design http://purl.obolibrary.org/obo/IAO_0000104 plan specification experimental design A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. http://purl.obolibrary.org/obo/APOLLO_SV_00000336 resistance to malaria infection http://purl.obolibrary.org/obo/APOLLO_SV_00000145 resistance to infection resistance to malaria A resistance to infection by P. vivax, P. ovale, P. malariae, and/or P. falciparum. http://purl.obolibrary.org/obo/IAO_0020000 identifier http://purl.obolibrary.org/obo/IAO_0000030 information content entity proper name An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity. http://purl.obolibrary.org/obo/IAO_0020010 identifier creating process http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process naming A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity. http://purl.obolibrary.org/obo/OMIABIS_0000019 unique resource locator http://purl.obolibrary.org/obo/IAO_0020000 identifier uri A CRID that constitutes a reference to an Internet resource. http://purl.obolibrary.org/obo/APOLLO_SV_00000557 infectious disease forecaster http://purl.obolibrary.org/obo/APOLLO_SV_00000007 simulation software application infectious disease forecasting software application A simulation software application that has as output one or more predicted count data items that are about a host population and that predict how many infections will occur at or will have occurred at some temporal region relative to when the data items are created. http://purl.obolibrary.org/obo/APOLLO_SV_00000566 data parsing http://purl.obolibrary.org/obo/OBI_0200000 data transformation reading data A data transformation that has a dataset, encoded in a particular data format specification, as input and extracts certain elements or parts of the dataset, typically into the volatile memory of a computer. http://purl.obolibrary.org/obo/APOLLO_SV_00000567 synthetic ecosystem constructor http://purl.obolibrary.org/obo/IAO_0000010 software software for creating a synthetic ecosystem dataset A software that when compiled and run, has specified output of an agent-level ecosystem data set. http://purl.obolibrary.org/obo/APOLLO_SV_00000796 dataset creating http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process dataset creation A planned process that has a data set as its specified output. http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population http://purl.obolibrary.org/obo/PCO_0000001 population population of host organisms A population of organisms some of which were susceptible to infection with a particular pathogen at some point in their lives. http://purl.obolibrary.org/obo/GEO_000000396 sovereign state http://purl.obolibrary.org/obo/GEO_000000400 governmental organization nation state A governmental organization with a defined territory on which it exercises internal and external sovereignty, a permanent population, a government, and the capacity to enter into relations with other sovereign states. http://purl.obolibrary.org/obo/STATO_0000134 true negative rate http://purl.obolibrary.org/obo/IAO_0000109 measurement datum specificity specificity is a measurement datum qualifying a binary classification test and is computed by substracting the false positive rate to the integral numeral 1 http://purl.obolibrary.org/obo/STATO_0000233 true positive rate http://purl.obolibrary.org/obo/IAO_0000109 measurement datum sensitivity sensitivity is a measurement datum qualifying a binary classification test and is computed by substracting the false negative rate to the integral numeral 1 http://purl.obolibrary.org/obo/STATO_0000252 categorical variable http://purl.obolibrary.org/obo/STATO_0000258 variable qualitative factor A categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories http://purl.obolibrary.org/obo/GEO_000000797 de jure sovereign state http://purl.obolibrary.org/obo/GEO_000000396 sovereign state de jure state A sovereign state whose political sovereignty has been recognized by the United Nations, in accordance with international law. http://purl.obolibrary.org/obo/OGMS_0000105 relapse http://purl.obolibrary.org/obo/BFO_0000015 process recurrent A disease stage which is preceded by a remission and characterized by the return of a manifestation of a disease. http://purl.obolibrary.org/obo/STATO_0000245 relative risk http://purl.obolibrary.org/obo/STATO_0000085 effect size estimate risk ratio Relative risk is a measurement datum which denotes the risk of an 'event' relative to an 'exposure'. Relative risk is calculated by forming the ratio of the probability of the event occurring in the exposed group versus the probability of this event occurring in the non-exposed group. http://purl.obolibrary.org/obo/PCO_0000000 PCO:collection of organisms http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate organism collection A material entity that consists of two or more organisms, viruses, or viroids. http://purl.obolibrary.org/obo/IAO_0020016 given name http://purl.obolibrary.org/obo/IAO_0020015 personal name first name A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name http://purl.obolibrary.org/obo/IAO_0020017 family name http://purl.obolibrary.org/obo/IAO_0020000 identifier surname An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children. http://purl.obolibrary.org/obo/OMRSE_00000011 patient role http://purl.obolibrary.org/obo/OMRSE_00000010 health care role patient A health care role borne by an organism and that is realized by presenting to a health care provider in a clinical encounter. http://purl.obolibrary.org/obo/OBIws_0000050 software execution http://purl.obolibrary.org/obo/OBI_0000011 planned process operation A planned process that realizes the concretization of a software. http://purl.obolibrary.org/obo/OBIws_0000104 web service execution http://purl.obolibrary.org/obo/OBIws_0000050 software execution web service operation A software execution that is provided by the web service, and involves invoking software execution over network. http://purl.obolibrary.org/obo/APOLLO_SV_00000625 count of deaths in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000624 count of events occurring in a population population death count A count of death events that occurred in a population in a given temporal region. http://purl.obolibrary.org/obo/APOLLO_SV_00000626 count of vaccinations in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000624 count of events occurring in a population population vaccination count A count of vaccination events that occurred in a population during a temporal region. http://purl.obolibrary.org/obo/APOLLO_SV_00000627 count of hospital stays in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000624 count of events occurring in a population population hospitalization count A count of hospital stays in a population during a temporal region. http://purl.obolibrary.org/obo/APOLLO_SV_00000628 count of infections in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000624 count of events occurring in a population population infection count A count of infections (process) that occurred in a population in a given temporal region. http://purl.obolibrary.org/obo/IDO_0000406 opportunistic infectious disposition http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition opportunitistic pathogenic disposition An infectious disposition to become part of a disorder only in organisms whose defenses are compromised. http://purl.obolibrary.org/obo/IDO_0000450 pathogenic disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition pathogenicity A disposition to initiate processes that result in a disorder. http://purl.obolibrary.org/obo/IDO_0000481 infectious disease incidence proportion http://purl.obolibrary.org/obo/BFO_0000019 quality cumulative incidence of infectious disease A quality that inheres in an organism population and is the proportion of members of the population not experiencing an infectious disease course at the beginning of a specified period of time and in whom the infectious disease begins during the specified period of time. http://purl.obolibrary.org/obo/IDO_0000482 infection incidence proportion http://purl.obolibrary.org/obo/BFO_0000019 quality cumulative incidence of infection A quality that inheres in an organism population and is the proportion of members of the population not infected at the beginning of a specified period of time who become infected during the specified period of time. http://purl.obolibrary.org/obo/IDO_0000530 primary pathogen http://purl.obolibrary.org/obo/IDO_0000596 infectious agent principal pathogen An infectious agent with a primary infectious disposition. http://purl.obolibrary.org/obo/IDO_0000654 opportunistic pathogen http://purl.obolibrary.org/obo/IDO_0000596 infectious agent opportunist An infectious agent with an opportunistic infectious disposition. http://purl.obolibrary.org/obo/IAO_0000708 ORCID identifier http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier Open Researcher and Contributor Identifier A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor. http://purl.obolibrary.org/obo/ERO_0000657 metagenomics analysis http://purl.obolibrary.org/obo/OBI_0000011 planned process environmental genomic analysis A molecular assay that is used to analyze metagenomic data; genetic material recovered directly from environmental samples for genomic research. http://purl.obolibrary.org/obo/IAO_0000707 graphical abstract http://purl.obolibrary.org/obo/IAO_0000315 abstract visual abstract An abstract that is pictorial summary of the main findings described in the document. http://purl.obolibrary.org/obo/APOLLO_SV_00000600 hospital stay dataset http://purl.obolibrary.org/obo/IAO_0000100 data set hospitalization dataset A dataset that is about two or more hospital stays involving two or more patients. http://purl.obolibrary.org/obo/APOLLO_SV_00000603 potentially infectious contact data set http://purl.obolibrary.org/obo/IAO_0000100 data set contact data set A data set that is about one or more potentially infectious contact processes in a population of host organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000607 vaccination administration census http://purl.obolibrary.org/obo/APOLLO_SV_00000187 population treatment census vaccination census A population treatment census that is about one or more vaccinations of organisms in a population. http://purl.obolibrary.org/obo/IAO_0000606 abbreviations section http://purl.obolibrary.org/obo/IAO_0000314 document part nonstandard abbreviations and acronyms A part of a document where abbreviations and their long-forms used within the document are listed. http://purl.obolibrary.org/obo/IAO_0000607 author information section http://purl.obolibrary.org/obo/IAO_0000314 document part contributor information A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document. http://purl.obolibrary.org/obo/IAO_0000609 author summary section http://purl.obolibrary.org/obo/IAO_0000314 document part synopsis A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers. http://purl.obolibrary.org/obo/IAO_0000611 availability section http://purl.obolibrary.org/obo/IAO_0000314 document part data sharing statement A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained. http://purl.obolibrary.org/obo/IAO_0000613 case report section http://purl.obolibrary.org/obo/IAO_0000314 document part case report A part of a document about the medical history of a specific patient as it relates to the topic of the document. http://purl.obolibrary.org/obo/IAO_0000615 conclusion section http://purl.obolibrary.org/obo/IAO_0000314 document part summary A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document. http://purl.obolibrary.org/obo/IAO_0000616 conflict of interest section http://purl.obolibrary.org/obo/IAO_0000314 document part authors' disclosures of potential conflicts of interest A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document. http://purl.obolibrary.org/obo/IAO_0000618 consent section http://purl.obolibrary.org/obo/IAO_0000314 document part consent A part of a document about the consent process that was used to enroll patients in a study. http://purl.obolibrary.org/obo/IAO_0000620 ethical approval section http://purl.obolibrary.org/obo/IAO_0000314 document part ethics statement A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis. http://purl.obolibrary.org/obo/IAO_0000622 figures section http://purl.obolibrary.org/obo/IAO_0000314 document part figures A part of a document that contains one or more figures. http://purl.obolibrary.org/obo/IAO_0000623 funding source declaration section http://purl.obolibrary.org/obo/IAO_0000314 document part study funding A part of a document used to detail information regarding the source of funding used in support of the generation of the document content. http://purl.obolibrary.org/obo/IAO_0000625 future directions section http://purl.obolibrary.org/obo/IAO_0000314 document part outlook A part of a document detailing extensions of the described work that may be implemented at some future point in time. http://purl.obolibrary.org/obo/IAO_0000627 genome announcement section http://purl.obolibrary.org/obo/IAO_0000314 document part genome announcement A document part announcing the publication of a novel draft genome sequence. http://purl.obolibrary.org/obo/IAO_0000630 keywords section http://purl.obolibrary.org/obo/IAO_0000314 document part keywords A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed. http://purl.obolibrary.org/obo/IAO_0000631 study limitations section http://purl.obolibrary.org/obo/IAO_0000314 document part study limitations A part of a document about biases or short comings related to the study design and execution. http://purl.obolibrary.org/obo/IAO_0000633 materials section http://purl.obolibrary.org/obo/IAO_0000314 document part materials A part of a document about the materials required to reproduce the content of the document. http://purl.obolibrary.org/obo/IAO_0000634 notes section http://purl.obolibrary.org/obo/IAO_0000314 document part notes A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc. http://purl.obolibrary.org/obo/IAO_0000637 pre-publication history section http://purl.obolibrary.org/obo/IAO_0000314 document part pre-publication history A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors. http://purl.obolibrary.org/obo/IAO_0000639 related work section http://purl.obolibrary.org/obo/IAO_0000314 document part related work A part of a document about work in other publications that is relevant to the content of the document. http://purl.obolibrary.org/obo/IAO_0000641 requirements section http://purl.obolibrary.org/obo/IAO_0000314 document part requirements A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource. http://purl.obolibrary.org/obo/IAO_0000644 statistical analysis section http://purl.obolibrary.org/obo/IAO_0000314 document part statistical analysis A part of the document used to describe the statistical methodologies employed in the work presented in the document. http://purl.obolibrary.org/obo/IAO_0000645 tables section http://purl.obolibrary.org/obo/IAO_0000314 document part tables A part of a document that contains one or more tables. http://purl.obolibrary.org/obo/IAO_0000650 database extract, transform, and load process http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process ETL A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second. http://purl.obolibrary.org/obo/IAO_8000002 editors ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module source ontology module An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users. http://purl.obolibrary.org/obo/IAO_8000005 import ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module import file A subset ontology module that is intended to be imported from another ontology. http://purl.obolibrary.org/obo/IAO_8000009 single layer subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module ribbon subset A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint. http://purl.obolibrary.org/obo/IAO_8000010 exclusion subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module antislim A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes. http://purl.obolibrary.org/obo/IAO_8000011 external import ontology module http://purl.obolibrary.org/obo/IAO_8000005 import ontology module external import An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach. http://purl.obolibrary.org/obo/IAO_8000012 species subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module taxon subset A subset ontology that is crafted to either include or exclude a taxonomic grouping of species. http://purl.obolibrary.org/obo/APOLLO_SV_00000609 census of vaccination supplies http://purl.obolibrary.org/obo/APOLLO_SV_00000189 control strategy inventory census vaccine availability A control strategy inventory census that counts available vaccine doses of one or more similar vaccines. http://purl.obolibrary.org/obo/APOLLO_SV_00000610 laboratory testing facility census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census testing availability A census of facilities that conduct clinical laboratory testing. http://purl.obolibrary.org/obo/IAO_0020020 code set http://purl.obolibrary.org/obo/IAO_0000030 information content entity code map An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things. http://purl.obolibrary.org/obo/VO_0000590 vaccine preparation http://purl.obolibrary.org/obo/OBI_0000011 planned process vaccine production vaccine preparation is a manufacturing process to produce a vaccine. http://purl.obolibrary.org/obo/VO_0000207 vaccine contraindication http://purl.obolibrary.org/obo/OAE_0000055 contraindication contraindication for vaccination A vaccine contraindication is a contraindication that increases the risks of a vaccination. http://purl.obolibrary.org/obo/APOLLO_SV_00000559 case series data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is the output of a case series investigation. http://purl.obolibrary.org/obo/APOLLO_SV_00000586 infectious disease forecast time specification http://purl.obolibrary.org/obo/IAO_0000007 action specification An action specification that specifies the duration of time that is to elapse between each calculation of each predicted data item that is the output of some infectious disease forecast. http://purl.obolibrary.org/obo/APOLLO_SV_00000608 excess mortality dataset http://purl.obolibrary.org/obo/APOLLO_SV_00000542 mortality data A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval. http://purl.obolibrary.org/obo/FBcv_0000667 website http://purl.obolibrary.org/obo/IAO_0000310 document A set of related web pages containing content such as text, images, video, audio, etc., prepared and maintained as a collection of information on a particular subject. http://purl.obolibrary.org/obo/FBcv_0000787 journal http://purl.obolibrary.org/obo/IAO_0000030 information content entity A publication issued on a regular, ongoing basis containing separate research articles and other writings such as reviews, comments and conference reports. http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding http://purl.obolibrary.org/obo/IAO_0000030 information content entity A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof. http://purl.obolibrary.org/obo/APOLLO_SV_00000000 purely intentional entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A generically dependent continuant which derives its existence and its entire endowment from an intending experience of consciousness (an "act") that is laden with determinate, uniformily structured content. http://purl.obolibrary.org/obo/APOLLO_SV_00000001 epidemic model http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model A disease transmission model whose concretization is realized as a simulation of infectious disease epidemic or infectious disease pandemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000003 population immunity survey http://purl.obolibrary.org/obo/APOLLO_SV_00000152 population survey A population survey that assesses the level of immunity against a particular pathogen in a specified population. http://purl.obolibrary.org/obo/APOLLO_SV_00000005 simulating of process of type X http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that (1) has at least one process part that has as participants representations of participants (in place of those participants) of processes of type X, and where all such process parts substitute for parts of processes of type X, and (2) is carried out for the purpose of planning for processes of type X, learning more about processes of type X, or teaching about processes of type X. http://purl.obolibrary.org/obo/APOLLO_SV_00000006 simulation requester identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to the legal person that commissions a simulation process. http://purl.obolibrary.org/obo/APOLLO_SV_00000007 simulation software application http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that provides a model of a real phenomenon based on a set of mathematical formulas. http://purl.obolibrary.org/obo/APOLLO_SV_00000008 software development http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A planned process that has specified output a software product and that involves the creation of source code. http://purl.obolibrary.org/obo/APOLLO_SV_00000009 simulator developer identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000105 software developer identifier An identifier that refers to the legal person that creates and maintains a simulator. http://purl.obolibrary.org/obo/APOLLO_SV_00000010 simulator identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000109 software identifier An identifier that refers to all version of a specific simulator. http://purl.obolibrary.org/obo/APOLLO_SV_00000012 simulation time step value http://purl.obolibrary.org/obo/IAO_0000029 numeral A numeral that is part of a simulation time step action specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000013 simulator version identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that, as part of a complete simulator identifier, refers to one specific version of a simulator software. http://purl.obolibrary.org/obo/APOLLO_SV_00000014 simulation time step unit http://purl.obolibrary.org/obo/UO_0000003 time unit A time unit that is part of a simulation time step action specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000015 simulation run length http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification The action specification that specifies the number of time steps a simulation is going to run. http://purl.obolibrary.org/obo/APOLLO_SV_00000023 vaccination dose schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000084 control strategy dose schedule An action specification comprising the number of doses and their timing for a vaccination of an individual organism against a specific infectious agent. http://purl.obolibrary.org/obo/APOLLO_SV_00000024 vaccination compliance http://purl.obolibrary.org/obo/OBI_0302867 calculated datum The fraction expressing the probability that an organism who is eligible according to a particular vaccination policy will be consented for that vaccination. http://purl.obolibrary.org/obo/APOLLO_SV_00000025 vaccination efficacy http://purl.obolibrary.org/obo/APOLLO_SV_00000227 infectious disease treatment efficacy The infectious disease treatment efficacy of a vaccine. http://purl.obolibrary.org/obo/APOLLO_SV_00000026 facility survey http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving counting numbers of facilities in a specific region. http://purl.obolibrary.org/obo/APOLLO_SV_00000029 infectious disease control strategy execution http://purl.obolibrary.org/obo/OBI_0000011 planned process A process that is applied to a population with the goal of preventing, or mitigating the severity of an infectious disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000036 normal distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution A continuous parametric probability distribution that is uniform; centered around the mean, parameter μ​; and whose spread of standard deviations, parameter σ​, adheres to the empirical rule. http://purl.obolibrary.org/obo/APOLLO_SV_00000038 simulation of exposed organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of an infectious agent host that is not contagious and is part of a simulated population. http://purl.obolibrary.org/obo/APOLLO_SV_00000039 simulated population location identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a geographical location to be used as location of a population in a simulation. http://purl.obolibrary.org/obo/APOLLO_SV_00000040 simulation of infectious organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of an infectious organism host that is contagious. http://purl.obolibrary.org/obo/APOLLO_SV_00000041 simulation of recovered organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulated organism in a simulated population that is not susceptible. http://purl.obolibrary.org/obo/APOLLO_SV_00000042 simulation of disease http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation A representation of a disposition realized in a represented disease course that at least part of the simulated population is represented as participating in. http://purl.obolibrary.org/obo/APOLLO_SV_00000045 obsolete asymptomatic infection fraction http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class The fraction given to express the probability that an organism will become infected, but stay asymptomatic. http://purl.obolibrary.org/obo/APOLLO_SV_00000046 vaccine supply schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification giving the number of doses of vaccine to be made available over a specific time period. http://purl.obolibrary.org/obo/APOLLO_SV_00000047 vaccination administration capacity http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification giving the number of vaccinations possible in a population during a specific time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000048 antiviral treatment efficacy http://purl.obolibrary.org/obo/APOLLO_SV_00000227 infectious disease treatment efficacy The infectious disease treatment efficacy of an antiviral drug. http://purl.obolibrary.org/obo/APOLLO_SV_00000049 antiviral efficacy delay http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The value of the time interval between an organism's taking antivirals against a specific infectious agent and the organism’s losing its infectious agent host role. http://purl.obolibrary.org/obo/APOLLO_SV_00000050 antiviral compliance http://purl.obolibrary.org/obo/OBI_0302867 calculated datum The fraction expressing the probability that an organism will be consented to receive antiviral treatment when eligible. http://purl.obolibrary.org/obo/APOLLO_SV_00000051 antiviral supply schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification giving the number of doses of an antiviral to be made available during a specific time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000052 antiviral administration schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification that tells the total number of antiviral doses available to be administered to a population during a specific time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000053 simulation of organism awaiting control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulated organism that is assumed “eligible, willing and able” to participate with a particular control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000054 complete simulator identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a specific simulator. http://purl.obolibrary.org/obo/APOLLO_SV_00000059 simulation of organism awaiting effect of control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulated organism that participates in a particular control measure that has not yet been effective. http://purl.obolibrary.org/obo/APOLLO_SV_00000060 simulation of antiviral control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation The simulation of an antiviral control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000061 simulation of vaccination control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation A simulation of a vaccination control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000063 simulation of control measure participant http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of an organism in a simulated population that has participated in an epidemic control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000064 simulation time series http://purl.obolibrary.org/obo/IAO_0000584 time sampled measurement data set A time sampled measurement data set, where the position in the sequence of each data item corresponds to a specific time_step of the simulation. http://purl.obolibrary.org/obo/APOLLO_SV_00000065 simulation identifier numeral http://purl.obolibrary.org/obo/IAO_0000029 numeral A numeral that indexes a specific simulation. http://purl.obolibrary.org/obo/APOLLO_SV_00000066 simulation of time step http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation A purely intentional entity that simulates a temporal interval of pre-specified length. http://purl.obolibrary.org/obo/APOLLO_SV_00000068 simulation time step action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An action specification that specifies the length of the time steps interval assumed in a simulation. http://purl.obolibrary.org/obo/APOLLO_SV_00000069 time step identifying numeral http://purl.obolibrary.org/obo/IAO_0000029 numeral A numeral that indexes a specific time step of a simulation. http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation http://purl.obolibrary.org/obo/APOLLO_SV_00000000 purely intentional entity A purely intentional entity that simulates an entity and its properties. http://purl.obolibrary.org/obo/APOLLO_SV_00000071 obsolete simulation of population location http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class The simulation of geographical location in which a population is assumed to be located. http://purl.obolibrary.org/obo/APOLLO_SV_00000072 simulation of susceptible organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of a susceptible organism in a simulated population. http://purl.obolibrary.org/obo/APOLLO_SV_00000073 simulation of symptomatic organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of a symptomatic infectious agent host. http://purl.obolibrary.org/obo/APOLLO_SV_00000074 simulation of asymptomatic organism http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism A simulation of an asymptomatic infectious agent host. http://purl.obolibrary.org/obo/APOLLO_SV_00000075 infectious disease control objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that is realized by processes that are able or likely to stop the spread of a disease in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000084 control strategy dose schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification comprising the number of doses and their timing for administering a substance to an individual organism to prevent the negative effects of a specific infectious agent to that organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification whose objective specification is an infectious disease control objective specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000087 count of susceptible population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count The count of individuals in a susceptible population (empirical or virtual). http://purl.obolibrary.org/obo/APOLLO_SV_00000088 count of contacted population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count The count of individuals in an exposed population (empirical or virtual). http://purl.obolibrary.org/obo/APOLLO_SV_00000089 measured vaccination efficacy http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is about a vaccination efficacy and is the specified output of a vaccination efficacy study. http://purl.obolibrary.org/obo/APOLLO_SV_00000090 vaccination efficacy study design execution http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A study design execution that has as its specified output one or more measured vaccination efficacy data items http://purl.obolibrary.org/obo/APOLLO_SV_00000094 community http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate Two or more distinct populations that are part of the same biotic ecosystem. http://purl.obolibrary.org/obo/APOLLO_SV_00000097 ecosystem http://purl.obolibrary.org/obo/BFO_0000040 material entity The sum of all biotic and abiotic entities in a geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000100 abiotic ecosystem http://purl.obolibrary.org/obo/BFO_0000040 material entity The abiotic ecosystem is the sum total of all continuants in a geographical region that are not organisms, parts of organisms, or dependent continuants that inhere in organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000101 fixed control strategy start time specification http://purl.obolibrary.org/obo/APOLLO_SV_00000794 infectious disease control strategy action specification An action specification that is part of a simulation software and specifies the time step numeral identifying the time step after which a simulation of a control strategy starts. http://purl.obolibrary.org/obo/APOLLO_SV_00000103 control strategy reactive endpoint fraction http://purl.obolibrary.org/obo/IAO_0000055 rule A rule that is part of an infectious disease control strategy specification and specifies at which fraction of a population a control strategy is to be discontinued. http://purl.obolibrary.org/obo/APOLLO_SV_00000104 biotic ecosystem http://purl.obolibrary.org/obo/BFO_0000040 material entity The biotic ecosystem is the sum total of all organism populations in a particular geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000105 software developer identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to the legal person that creates and maintains software. http://purl.obolibrary.org/obo/APOLLO_SV_00000106 complete software identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a specific piece of software. http://purl.obolibrary.org/obo/APOLLO_SV_00000107 atmosphere http://purl.obolibrary.org/obo/BFO_0000024 fiat object part A fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force http://purl.obolibrary.org/obo/APOLLO_SV_00000108 software version identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that, as part of a complete software identifier, refers to one specific version of the software. http://purl.obolibrary.org/obo/APOLLO_SV_00000109 software identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to all version of a specific software. http://purl.obolibrary.org/obo/APOLLO_SV_00000111 obsolete educational institution http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class An educational institution is an place organization which provides the necessary system for people of different ages gain an education. It includes (among others) preschools, childcare, elementary schools, and universities. http://purl.obolibrary.org/obo/APOLLO_SV_00000112 school closure target facilities http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity about educational institutions that is part of the action sepcification of a school closure control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000115 infection acquisition http://purl.obolibrary.org/obo/GO_0044409 symbiont entry into host The biological process of pathogen organism(s) of a particular biological taxon entering (the tissues of the body of) a host organism of another taxon from a contagious host or a contaminated thing and reproducing using host resources. http://purl.obolibrary.org/obo/APOLLO_SV_00000117 vaccine identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a type of vaccine, i.e., one of a class of manufactured vaccines that public health would consider interchangable. http://purl.obolibrary.org/obo/APOLLO_SV_00000119 vaccination identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier A unique identifier that refers to a protocol for vaccinating one person http://purl.obolibrary.org/obo/APOLLO_SV_00000122 antiviral identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier A unique identifier that refers to an antiviral drug product http://purl.obolibrary.org/obo/APOLLO_SV_00000123 school closure control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000229 place closure control strategy A place closure control strategy whose action specification is realized in a school closure process. http://purl.obolibrary.org/obo/APOLLO_SV_00000129 obsolete Reactive control measure http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class An epidemic control measure plan specification that has a conditional specification as part http://purl.obolibrary.org/obo/APOLLO_SV_00000131 reactive control strategy threshold http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies the fraction of the population known to have undergone a specific event that results in starting or stopping an infectious disease control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000133 control strategy response delay http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the time interval from the decision to implement an infectious disease control strategy to the start of the control strategy expressed in number of time intervals. http://purl.obolibrary.org/obo/APOLLO_SV_00000136 vaccination control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An individual treatment control strategy that has as part an action specification that is realized in a vaccination process. http://purl.obolibrary.org/obo/APOLLO_SV_00000138 antiviral course http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification An action specification that tells how many doses of antiviral drug should be given to each individual that participates in the antiviral control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000142 vaccination http://purl.obolibrary.org/obo/OGMS_0000090 treatment A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000151 immune resistance to infection http://purl.obolibrary.org/obo/APOLLO_SV_00000145 resistance to infection Resistance to infection that is conferred by immune system/immune mechansisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000154 exposed population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population A population of host organisms undergoing infection and that are not infectious. http://purl.obolibrary.org/obo/APOLLO_SV_00000155 population infection survey http://purl.obolibrary.org/obo/APOLLO_SV_00000152 population survey A population survey that counts the number of individuals in the population who are infected with a particular pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000156 contagious population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population A population of host organisms undergoing infection that are contagious. http://purl.obolibrary.org/obo/APOLLO_SV_00000159 population demographic census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census that is the specific outcome of a population demographic survey. http://purl.obolibrary.org/obo/APOLLO_SV_00000162 MIDAS scenario representation http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about a MIDAS scenario and contains population disease census data. http://purl.obolibrary.org/obo/APOLLO_SV_00000165 agent-level ecosystem census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census that is the specified output of a agent-level ecosystem data generation that had census data as an input. http://purl.obolibrary.org/obo/APOLLO_SV_00000166 contaminated thing http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An independent continuant that is the localization of a pathogen, but is not undergoing an infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000167 contamination acquisition http://purl.obolibrary.org/obo/GO_0044409 symbiont entry into host A biological process whereby an entity that is not in contact with a pathogen of a particular biological taxon begins to undergo contamination with that pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000171 antiviral treatment http://purl.obolibrary.org/obo/APOLLO_SV_00000318 drug treatment A treatment with an antiviral drug. http://purl.obolibrary.org/obo/APOLLO_SV_00000172 susceptibility http://purl.obolibrary.org/obo/BFO_0000016 disposition The ability to participate in infection acquisition as a host. http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model http://purl.obolibrary.org/obo/IAO_0000064 algorithm An algorithm that models the progress of a transmissible disease in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000175 obsolete school organization http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class An organization created with the purpose of providing education to those of its members that are bearer of student role. http://purl.obolibrary.org/obo/APOLLO_SV_00000178 school student population http://purl.obolibrary.org/obo/OMRSE_00000023 collection of humans The collection of students administrated by exaclty one school organization. http://purl.obolibrary.org/obo/APOLLO_SV_00000179 simulator configuration http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An information content entity that contains everything a simulator needs to run, including the representation of a scenario. http://purl.obolibrary.org/obo/APOLLO_SV_00000180 obsolete student role http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A human social role that is realized by attending a school to receive formal education. http://purl.obolibrary.org/obo/APOLLO_SV_00000181 antiviral control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000304 anti-infective individual treatment control strategy An anti-infective individual treatment control strategy that has as part an action specification that is realized in antiviral treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000183 simulator time specification http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An information content entity that specifies the length in time of a single simulator step (e.g., 1 day) and the requested run length of the simulation (number of steps). http://purl.obolibrary.org/obo/APOLLO_SV_00000184 infectious disease scenario http://purl.obolibrary.org/obo/IAO_0000100 data set A dataset that represents at least one pathogen population (of a particular biological taxon) in one host population (of a particular biological taxon) in an ecosystem in a particular location at a particular point in time. http://purl.obolibrary.org/obo/APOLLO_SV_00000185 scenario date http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes a real date corresponding to simulator time zero. http://purl.obolibrary.org/obo/APOLLO_SV_00000186 contamination http://purl.obolibrary.org/obo/GO_0008150 biological process The process of existence without reproduction of a pathogen of a particular biological taxon in or on some material entity or the process of reproduction of a pathogen in or on a material entity that is not an organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000187 population treatment census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census about a particular medical treatment of a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000188 population and environment census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census that represents the biotic and abiotic elements of an ecosystem at simulator time zero. http://purl.obolibrary.org/obo/APOLLO_SV_00000189 control strategy inventory census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census that is the outcome of assessing control-strategy-related facilities and supply chains. http://purl.obolibrary.org/obo/APOLLO_SV_00000190 contagious organism http://purl.obolibrary.org/obo/APOLLO_SV_00000238 host organism A host who is able to transmit some infection to another organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000193 vaccination efficacy inferred http://purl.obolibrary.org/obo/IAO_0000027 data item A data item inferring a vaccination efficacy based on epidemiological data. http://purl.obolibrary.org/obo/APOLLO_SV_00000195 target population http://purl.obolibrary.org/obo/PCO_0000001 population An organism population that is the target for a disease control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000201 contaminated thing census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census about contaminated things of a given type in an area of interest. http://purl.obolibrary.org/obo/APOLLO_SV_00000203 NCBI taxon identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier curated by the NCBI Taxonomy that designates a biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000204 disease outcome http://purl.obolibrary.org/obo/BFO_0000015 process A processual entity that is either the outcome of a disease course or a part of a disease course and has etiological relevance. http://purl.obolibrary.org/obo/APOLLO_SV_00000205 susceptible organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism that is the bearer of a susceptibility disposition. http://purl.obolibrary.org/obo/APOLLO_SV_00000206 immune organism http://purl.obolibrary.org/obo/APOLLO_SV_00000207 resistant organism An organism that is the bearer of an immune resistance disposition. http://purl.obolibrary.org/obo/APOLLO_SV_00000207 resistant organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism that is the bearer of resistance to infection http://purl.obolibrary.org/obo/APOLLO_SV_00000208 control strategy start time information http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies the start time of the implementation of a infectious disease control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000209 infected organism http://purl.obolibrary.org/obo/APOLLO_SV_00000238 host organism An infectious agent host who is NOT able to transmit the infection to another organism of the same species. http://purl.obolibrary.org/obo/APOLLO_SV_00000210 apollo simulator configuration http://purl.obolibrary.org/obo/APOLLO_SV_00000179 simulator configuration A simulator configuration that start an Apollo simulator. http://purl.obolibrary.org/obo/APOLLO_SV_00000212 treatment administration capacity schedule http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification that specifies the capacity to administer a particular treatment over a specific temporal interval in a specified geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000213 treatment supply schedule http://purl.obolibrary.org/obo/APOLLO_SV_00000500 schedule A schedule that specifies the availability of a particular drug over a specific temporal interval in a specified geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000214 vaccination efficacy for simulator configuration http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies the vaccination efficacy that is part of a simulator configuration. http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that assigns a probability to each measurable subset of the possible outcomes of a random experiment, survey, or procedure of statistical inference. http://purl.obolibrary.org/obo/APOLLO_SV_00000216 discrete probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution A probability distribution over a discrete random variable http://purl.obolibrary.org/obo/APOLLO_SV_00000217 infection state data item http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies the epidemiologically-relevant state of a host organism at a specific time with respect to infection with a particular pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000218 vaccination preventable outcome http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the disease outcome a vaccination seeks to prevent. http://purl.obolibrary.org/obo/APOLLO_SV_00000219 Apollo pathogen code http://purl.obolibrary.org/obo/IAO_0020000 identifier An information content entity that designates a biological taxon and optionally a clade of pathogens. http://purl.obolibrary.org/obo/APOLLO_SV_00000220 abiotic ecosystem element http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is part of an abiotic ecosystem. http://purl.obolibrary.org/obo/APOLLO_SV_00000221 immune population acting like immune http://purl.obolibrary.org/obo/APOLLO_SV_00000235 immune population An immune population that acts as the members know they are immune (do not seek vaccination/antiviral treatment, etc.). http://purl.obolibrary.org/obo/APOLLO_SV_00000222 immune population acting like not immune http://purl.obolibrary.org/obo/APOLLO_SV_00000235 immune population An immune population that acts as the members assume they are not immune (e.g. seek vaccination/antiviral treatment). http://purl.obolibrary.org/obo/APOLLO_SV_00000223 becoming asymptomatic http://purl.obolibrary.org/obo/APOLLO_SV_00000204 disease outcome The process of an organism stopping to experience any symptoms caused by a disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000224 becoming symptomatic http://purl.obolibrary.org/obo/APOLLO_SV_00000204 disease outcome The process of an organism beginning to experience symptoms caused by a disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000225 becoming severely symptomatic http://purl.obolibrary.org/obo/APOLLO_SV_00000204 disease outcome The process of an organism beginning to experience severe symptoms caused by a disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000226 infectiousness profile http://purl.obolibrary.org/obo/BFO_0000144 process profile A process profile that specifies the degree to which a host is likely to pass on an infection to a susceptible organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000227 infectious disease treatment efficacy http://purl.obolibrary.org/obo/BFO_0000016 disposition The disposition of one or more portions of material entity, when administered to a susceptible organism by a certain route and according to a certain schedule, to produce a structural change in an organism of a specific species, whereby this structural change serves as the physical basis of a protective resistance disposition. http://purl.obolibrary.org/obo/APOLLO_SV_00000228 border control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000486 travel-related infectious disease control strategy A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders. http://purl.obolibrary.org/obo/APOLLO_SV_00000229 place closure control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open. http://purl.obolibrary.org/obo/APOLLO_SV_00000230 case isolation control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious. http://purl.obolibrary.org/obo/APOLLO_SV_00000231 travel restriction control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000486 travel-related infectious disease control strategy A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one ecosystem to another ecosystem http://purl.obolibrary.org/obo/APOLLO_SV_00000232 clade name http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier that denotes a group of organisms or groups of organisms based on common ancestors. http://purl.obolibrary.org/obo/APOLLO_SV_00000237 pathogen http://purl.obolibrary.org/obo/OBI_0100026 organism An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000238 host organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000239 infectious disease http://purl.obolibrary.org/obo/OGMS_0000031 disease A disease that inheres in a host and, when realized, is realized as a disease course that is causally preceded by an infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000241 age range category http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification An information content entity specifying the upper and lower limit of a range of ages of continuants. http://purl.obolibrary.org/obo/APOLLO_SV_00000242 name of temporal interval http://purl.obolibrary.org/obo/APOLLO_SV_00000395 name of temporal region A name of temporal region that specifies a time span on a specified time scale by giving a start time and a duration. http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A measurement datum that quantifies a temporal region that is occupied by a processual entity. http://purl.obolibrary.org/obo/APOLLO_SV_00000244 disease unique identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000598 disease identifier A unique identifier that refers to a disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000245 conditional probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution A probability distribution of two jointly distributed random variables X and Y, where Y is know to be a particular value. http://purl.obolibrary.org/obo/APOLLO_SV_00000246 joint probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution In the study of probability, given at least two random variables X, Y, ..., that are defined on a probability space, the joint probability distribution for X, Y, ... is a probability distribution that gives the probability that each of X, Y, ... falls in any particular range or discrete set of values specified for that variable. http://purl.obolibrary.org/obo/APOLLO_SV_00000247 unconditional probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution An unconditional probability distribution is the probability distribution of an uncertain variable, U, implicitly incorporating the uncertainty introduced by any other relevant variables. Mathematically, U’s unconditional probability distribution is written {U | E}, where E represents the background state of information under which the distribution is assessed. http://purl.obolibrary.org/obo/APOLLO_SV_00000254 log normal distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution A continuous parametric probability distribution that takes as its input a normally-distributed logarithmic function with mean μ and standard deviation σ. http://purl.obolibrary.org/obo/APOLLO_SV_00000255 gamma distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution A gamma distribution is a two-parameter family of continuous probability distributions http://purl.obolibrary.org/obo/APOLLO_SV_00000256 Weibull Distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution A continuous parametric probability distribution that gives the distribution of lifetimes of objects. It was originally proposed to quantify fatigue data, but it is also used in analysis of systems involving a "weakest link." http://purl.obolibrary.org/obo/APOLLO_SV_00000257 continuous uniform distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution A continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable. http://purl.obolibrary.org/obo/APOLLO_SV_00000259 apollo location code http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a particular geographical region and that is constructed per guidelines of the Apollo project. http://purl.obolibrary.org/obo/APOLLO_SV_00000260 control strategy stop time information http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies the time at which an infectious disease control strategy ends. http://purl.obolibrary.org/obo/APOLLO_SV_00000261 infectious disease control strategy trigger definition http://purl.obolibrary.org/obo/IAO_0000055 rule A rule that specifies the event that, when it occurs, is the trigger to either start or stop an infectious disease control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000262 contamination probability http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probability of the occurence of a contamination acquisition from either an infected organism or another contaminated thing. http://purl.obolibrary.org/obo/APOLLO_SV_00000263 control strategy stand-down delay http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the time interval from the decision to cease an infectious disease control strategy to the time the control strategy ends expressed in number of time intervals. http://purl.obolibrary.org/obo/APOLLO_SV_00000264 infection acquisition from contaminated thing http://purl.obolibrary.org/obo/APOLLO_SV_00000115 infection acquisition An infection acquisition whereby a susceptible host acquires an infection from a contaminated thing. http://purl.obolibrary.org/obo/APOLLO_SV_00000265 infection acquisition from infectious host http://purl.obolibrary.org/obo/APOLLO_SV_00000115 infection acquisition An infection acquisition whereby a susceptible host acquires an infection from an infectious host. http://purl.obolibrary.org/obo/APOLLO_SV_00000266 disease surveillance capability http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition of a disease surveillance infrastructure to detect the outbreak of one particular disease in the geographical region the infrastructure aims to cover. http://purl.obolibrary.org/obo/APOLLO_SV_00000268 time scale name http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that designates a scale according to which time is measured (e.g., Gregorian Calendar). http://purl.obolibrary.org/obo/APOLLO_SV_00000269 disease surveillance trigger definition http://purl.obolibrary.org/obo/APOLLO_SV_00000261 infectious disease control strategy trigger definition An infectious disease control trigger definition for a reactive control measure based on the outcome of disease surveillance. http://purl.obolibrary.org/obo/APOLLO_SV_00000270 treatment surveillance trigger definition http://purl.obolibrary.org/obo/APOLLO_SV_00000261 infectious disease control strategy trigger definition An infectious disease control trigger definition for a reactive control measure based on the outcome of disease surveillance. http://purl.obolibrary.org/obo/APOLLO_SV_00000271 temporal trigger definition http://purl.obolibrary.org/obo/APOLLO_SV_00000261 infectious disease control strategy trigger definition An infectious disease control trigger definition that is based on the passage of a specified interval of time. http://purl.obolibrary.org/obo/APOLLO_SV_00000272 time since time scale zero http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration of time that has elapsed from the zero reference point to a later time on the time scale http://purl.obolibrary.org/obo/APOLLO_SV_00000277 sensitivity of case detection http://purl.obolibrary.org/obo/STATO_0000233 true positive rate The sensitivity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X. http://purl.obolibrary.org/obo/APOLLO_SV_00000278 probability of entry into a country is denied http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probability that entry is denied as part of a border control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000279 probability of exit from a country is denied http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probability that exit is denied as part of a border control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000283 school transmission multiplier http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a school. http://purl.obolibrary.org/obo/APOLLO_SV_00000284 household transmission multiplier http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a household. http://purl.obolibrary.org/obo/APOLLO_SV_00000285 workplace transmission multiplier http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a workplace. http://purl.obolibrary.org/obo/APOLLO_SV_00000286 close individual places independently strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000229 place closure control strategy A place-closure control strategy that decides on a case-by-case basis whether to close places of a certain type, as opposed to blanket policy that closes all places of a certain type at the same time. http://purl.obolibrary.org/obo/APOLLO_SV_00000287 place closure period http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration from the closure of a place until the time when it is reopened. http://purl.obolibrary.org/obo/APOLLO_SV_00000290 treatment preventable outcome http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the disease outcome that a treatment seeks to prevent. http://purl.obolibrary.org/obo/APOLLO_SV_00000292 individual treatment strategy supply schedule unit of measure http://purl.obolibrary.org/obo/UO_0000000 unit The unit of measure for the supply schedule of an individual treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000295 reactive control strategy threshold unit of measure http://purl.obolibrary.org/obo/UO_0000000 unit A unit of measure for a threshold in a reactive infectious disease control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000299 immune organism that acts like it is immune http://purl.obolibrary.org/obo/APOLLO_SV_00000206 immune organism An immune organism that acts as if it is immune (i.e., it does not seek vaccination or avoid contact with infectious organisms). http://purl.obolibrary.org/obo/APOLLO_SV_00000300 immune organism that acts like it is not immune http://purl.obolibrary.org/obo/APOLLO_SV_00000206 immune organism An immune organism that acts as if it is NOT immune (i.e., it seeks vaccination and/or avoids contact with infectious organisms). http://purl.obolibrary.org/obo/APOLLO_SV_00000301 naturally-acquired active immune resistance http://purl.obolibrary.org/obo/APOLLO_SV_00000151 immune resistance to infection An immune resistance to infection that is causally preceded by an infection and an immune response to that infection with the production of antibodies to antigens from the pathogen population participating in the infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000302 recovered organism http://purl.obolibrary.org/obo/APOLLO_SV_00000206 immune organism An organism that is the bearer of a naturally-acquired, active immune resistance to infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000304 anti-infective individual treatment control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An individual treatment control strategy that has as part an action specification that is realized in anti-infective treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000305 anti-bacterial control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000304 anti-infective individual treatment control strategy An anti-infective individual treatment control strategy that has as part an action specification that is realized in antibacterial treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000306 infection in ecosystem http://purl.obolibrary.org/obo/BFO_0000015 process A process comprised of numerous infections and infection acquisitions with a particular pathogen in one or more populations of hosts. http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that has a vector control action specification as part. http://purl.obolibrary.org/obo/APOLLO_SV_00000309 abiotic ecosystem census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census of entities of a certain type or types in the abiotic ecosystem. http://purl.obolibrary.org/obo/APOLLO_SV_00000310 vector control action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000794 infectious disease control strategy action specification An action specification that is realized in reducing the number of infection acquistions in one population of a particular species from infectious hosts in a population of another particular species, called the "vector". http://purl.obolibrary.org/obo/APOLLO_SV_00000311 Breteau Index http://purl.obolibrary.org/obo/OBI_0000679 average value The average number of water containers testing positive for the presence of a particular mosquito species, typically Aedes aegyptii, per 100 households in the geographical region under surveillance. http://purl.obolibrary.org/obo/APOLLO_SV_00000312 individual mosquito reproduction http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction A multicellular organism reproduction that has as its agent a mosquito (taxon Culicidae, ID 7157) http://purl.obolibrary.org/obo/APOLLO_SV_00000313 gonotrophic cycle duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration of the temporal interval occupied by a gonotropic period. http://purl.obolibrary.org/obo/APOLLO_SV_00000314 gonotrophic cycle http://purl.obolibrary.org/obo/GO_0008150 biological process The process in a female mosquito of taking a blood meal, developing eggs, and laying the eggs (oviposition). http://purl.obolibrary.org/obo/APOLLO_SV_00000315 oviposition site census http://purl.obolibrary.org/obo/APOLLO_SV_00000309 abiotic ecosystem census An abiotic ecosystem census of the locations where pregnant female mosquitos lay their eggs. http://purl.obolibrary.org/obo/APOLLO_SV_00000317 incubation period http://purl.obolibrary.org/obo/BFO_0000015 process A process that is part of an infectious disease course, has the same beginning temporal boundary as the disease course, and has an ending temporal boundary at the onset of symptoms due to the infectious disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000318 drug treatment http://purl.obolibrary.org/obo/OGMS_0000090 treatment A treatment with a drug product. http://purl.obolibrary.org/obo/APOLLO_SV_00000322 voluntary household quarantine control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts. http://purl.obolibrary.org/obo/APOLLO_SV_00000323 liberal sick leave control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease conrol straegy that seeks to reduce disease transmission by offering employees extra paid time off to stay home, in an attempt to reduce contacts that transmit disease in the workplace. http://purl.obolibrary.org/obo/APOLLO_SV_00000328 larvicide control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy that has an action specification that is realized by reducing the number of larval-stage organisms of a vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000330 colonization http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction A reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000331 infection in population http://purl.obolibrary.org/obo/APOLLO_SV_00000306 infection in ecosystem An infection in an ecosystem occurring in one population of organisms http://purl.obolibrary.org/obo/APOLLO_SV_00000332 colonization acquisition http://purl.obolibrary.org/obo/GO_0044409 symbiont entry into host A biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host http://purl.obolibrary.org/obo/APOLLO_SV_00000333 decolonization control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization http://purl.obolibrary.org/obo/APOLLO_SV_00000334 infection acquistion from self colonization http://purl.obolibrary.org/obo/GO_0044409 symbiont entry into host An infection acquisition by which a pathogen organism from a particular biological taxon, which previously was participating in a colonization process in a host organism from another taxon, begins to invade the tissues of the same host organism and reproduce there. http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis http://purl.obolibrary.org/obo/APOLLO_SV_00000596 symbiosis A symbiosis where the organisms that are interacting remain physically external to one another. http://purl.obolibrary.org/obo/APOLLO_SV_00000338 antagonism http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis An ectosymbiosis that results in harm to all participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000339 amensalism http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis An ectosymbiosis that results in harm to one of the participating organisms but neither harms nor benefits the other participating organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000340 agonism http://purl.obolibrary.org/obo/APOLLO_SV_00000337 ectosymbiosis An ectosymbiosis that results in harm to one of the participating organisms and benefit to another participating organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000341 intimate agonism http://purl.obolibrary.org/obo/APOLLO_SV_00000340 agonism An agonism where the participating organisms, although physically external to one another, nevertheless have close and persistent physical contact for most or all of the interaction. http://purl.obolibrary.org/obo/APOLLO_SV_00000354 endosymbiosis http://purl.obolibrary.org/obo/APOLLO_SV_00000596 symbiosis A symbiosis where one organism is physically contained within another organism (called the 'host'). http://purl.obolibrary.org/obo/APOLLO_SV_00000356 transient agonism http://purl.obolibrary.org/obo/APOLLO_SV_00000340 agonism An agonism where the participating organisms maintain significant physical separation from one another through most or all of the interaction. http://purl.obolibrary.org/obo/APOLLO_SV_00000357 predation http://purl.obolibrary.org/obo/APOLLO_SV_00000356 transient agonism A non-intimate agonism in which the harm is fatal. http://purl.obolibrary.org/obo/APOLLO_SV_00000358 grazing http://purl.obolibrary.org/obo/APOLLO_SV_00000356 transient agonism A non-intimate agonism in which the harm is not fatal. http://purl.obolibrary.org/obo/APOLLO_SV_00000371 bodily harm http://purl.obolibrary.org/obo/BFO_0000015 process A process that has as output a material entity that is the material basis for an abnormal homeostasis dispostion. http://purl.obolibrary.org/obo/APOLLO_SV_00000372 bodily benefit http://purl.obolibrary.org/obo/BFO_0000015 process A process that facilitates the realization of one or more normal homeostasis dispositions borne by an organism and/or one or more causally relatively isolated parts of the organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000373 parasite http://purl.obolibrary.org/obo/OBI_0100026 organism An organism participating in an ectosymbiotic or endosymbiotic parasitism as the organism that benefits. http://purl.obolibrary.org/obo/APOLLO_SV_00000374 parasitoid http://purl.obolibrary.org/obo/OBI_0100026 organism An organism participating in an ectosymbiotic or endosymbiotic parasitoidism as the organism that benefits. http://purl.obolibrary.org/obo/APOLLO_SV_00000375 target population definition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is part of an infectious disease control strategy and that specifies the intended population to which one or more interventions in the control strategy will be applied. http://purl.obolibrary.org/obo/APOLLO_SV_00000376 name of a temporal boundary http://purl.obolibrary.org/obo/APOLLO_SV_00000395 name of temporal region A name of temporal region that designates a temporal boundary http://purl.obolibrary.org/obo/APOLLO_SV_00000377 location definition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum. http://purl.obolibrary.org/obo/APOLLO_SV_00000378 treatment contraindication http://purl.obolibrary.org/obo/OAE_0000055 contraindication A contraindication that increases the risk of a treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000379 uncertain duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that is specified as a probability distribution over a range of numbers. http://purl.obolibrary.org/obo/APOLLO_SV_00000380 fraction of contaminated thing http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the fraction of things of a particular type in a particular geographical region or site that are contaminated with a pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000381 specificity of case detection http://purl.obolibrary.org/obo/STATO_0000134 true negative rate The specificity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X. http://purl.obolibrary.org/obo/APOLLO_SV_00000382 specificity of treatment detection http://purl.obolibrary.org/obo/STATO_0000134 true negative rate The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000383 sensitivity of treatment detection http://purl.obolibrary.org/obo/STATO_0000233 true positive rate The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000384 fixed duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that is specified as a single number. http://purl.obolibrary.org/obo/APOLLO_SV_00000387 census objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification to observe and/or estimate all the organisms of a particular taxon in a particular geographical region or place and create a data set about them. http://purl.obolibrary.org/obo/APOLLO_SV_00000388 census plan specification http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification with a census objective specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000389 census taking http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that realizes a census plan specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000390 Wolbachia vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy that is realized by releasing individuals of the vector population infected with bacteria of the taxon Wolbachia to inhibit reproduction of individuals in the vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000391 indoor residual spraying vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy that is realized by spraying chemicals in a place to kill individuals of the vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000392 container reduction vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy for mosquitoes that is realized by reducing the number of water-containing vessels in which mosquitoes can lay eggs. http://purl.obolibrary.org/obo/APOLLO_SV_00000393 treatment system logistics http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies how many doses or courses of treatment, per a particular unit of time (typically one day), can be supplied for a given geographical region and/or how many of those doses or courses can subsequently be administered. http://purl.obolibrary.org/obo/APOLLO_SV_00000394 treatment surveillance capability http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition of a treatment surveillance infrastructure to detect individuals who have received treatment in the geographical region the infrastructure aims to cover. http://purl.obolibrary.org/obo/APOLLO_SV_00000396 population serology survey http://purl.obolibrary.org/obo/APOLLO_SV_00000152 population survey A population survey that assesses the presence (plus or minus quantity) of antibody to a particular antigen in individuals in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000397 infection case list http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is a collection of case records. http://purl.obolibrary.org/obo/APOLLO_SV_00000398 infection case record http://purl.obolibrary.org/obo/IAO_0000100 data set A data set whose data items are about a host and its participation in an infection and potentially other activities occuring in the same time interval as the infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000401 individual mosquito behavior http://purl.obolibrary.org/obo/GO_0007610 behavior An individual behavior of a mosquito (organism of family Culicidae). http://purl.obolibrary.org/obo/APOLLO_SV_00000402 individual human behavior http://purl.obolibrary.org/obo/GO_0007610 behavior An individual behavior of a human being. http://purl.obolibrary.org/obo/APOLLO_SV_00000403 transmission tree http://purl.obolibrary.org/obo/OBI_0000658 data representational model A data structure that represents, for a particular infection in ecosystem, a subset of infected organisms and for each infected organism in the subset except the first one infected temporally, its infection acquisition from an infected host as a machine-readable link to that infected host. http://purl.obolibrary.org/obo/APOLLO_SV_00000404 infectiousness http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition inhering in an organism of a particular biological taxon that is realized only by the organism participating in an infection as the reproducing organism inside another organism of a different particular biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000407 contacted organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism that is the bearer of a potentially infectious contact role during a potentially infectious contact process. http://purl.obolibrary.org/obo/APOLLO_SV_00000408 contact definition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies which kinds of processes involving an interaction between a given organism and either (1) another, potentially infectious organism or (2) a contaminated environment have a sufficiently high probability of resultling in an infection acquisition by the organism to be of interest to an outbreak investigation. http://purl.obolibrary.org/obo/APOLLO_SV_00000409 ring individual treatment control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An individual treatment control strategy that immediately targets individuals in the population who are at the perimeter of an epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000410 Wolbachia release site http://purl.obolibrary.org/obo/APOLLO_SV_00000464 seed site A seed site for a Wolbachia control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000411 Wolbachia every nth site release action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000466 vector release site action specification A vector release site action specification for a Wolbachia control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000412 leakage rate of Wolbachia infection in mosquito population infected with Wolbachia http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum The rate at which offspring of the Wolbachia-infected female mosquito subpopulation (of the overall mosquito population) are not infected with Wolbachia. http://purl.obolibrary.org/obo/APOLLO_SV_00000413 transmission rate of pathogen to human from Wolbachia-infected mosquito bites http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum The rate at which bites of mosquitoes infected with both Wolbachia and a particular pathogen such as dengue result in an infection in a susceptible human host. http://purl.obolibrary.org/obo/APOLLO_SV_00000414 adult vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy that is realized by reducing the number of adults in a vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000415 Wolbachia prerelease adult vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000414 adult vector control strategy An adult vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the adult population that gets infected with Wolbachia. http://purl.obolibrary.org/obo/APOLLO_SV_00000416 Wolbachia prerelease larvicide vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000328 larvicide control strategy An larvicide vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the population that gets infected with Wolbachia. http://purl.obolibrary.org/obo/APOLLO_SV_00000417 life stages with duration and mortality http://purl.obolibrary.org/obo/OBI_0000658 data representational model A data structure that refers to (1) a subpopulation of a population based on life stage, (2) the rate of mortality of that subpopulation, and (3) the average duration of time that the individuals in the subpopulation spend in that life stage. http://purl.obolibrary.org/obo/APOLLO_SV_00000418 Wolbachia effect on egg mortality rate in mosquito population http://purl.obolibrary.org/obo/GO_0051701 biological process involved in interaction with host A process of change in the egg mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population. http://purl.obolibrary.org/obo/APOLLO_SV_00000419 Wolbachia effect on adult mortality rate in mosquito population http://purl.obolibrary.org/obo/GO_0051701 biological process involved in interaction with host A process of change in the adult mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population. http://purl.obolibrary.org/obo/APOLLO_SV_00000420 Wolbachia effect on larval mortality rate in mosquito population http://purl.obolibrary.org/obo/GO_0051701 biological process involved in interaction with host A process of change in the larval mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population. http://purl.obolibrary.org/obo/APOLLO_SV_00000421 Wolbachia effect on female fecundity in mosquito population http://purl.obolibrary.org/obo/GO_0051701 biological process involved in interaction with host A process of change in fecundity of females in a mosquito population that is the outcome of an infection in that population with a Wolbachia bacteria population. http://purl.obolibrary.org/obo/APOLLO_SV_00000422 confidence interval http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies both an interval estimate centered around some sample statistic, and the probability that the process/method of obtaining the interval estimate's range of values will generate an interval that contains some unobserved population parameter of interest. http://purl.obolibrary.org/obo/APOLLO_SV_00000423 Wolbachia release interval http://purl.obolibrary.org/obo/APOLLO_SV_00000465 seed release interval A seed release interval for a Wolbachia control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000424 mean with confidence interval http://purl.obolibrary.org/obo/OBI_0000658 data representational model A data structure that specifies both the sample mean and the confidence interval generated by the measurement process. http://purl.obolibrary.org/obo/APOLLO_SV_00000425 mean with standard deviation http://purl.obolibrary.org/obo/OBI_0000658 data representational model A data structure that specifies both the sample mean and the standard deviation generated by the measurement process. http://purl.obolibrary.org/obo/APOLLO_SV_00000426 number of Wolbachia-infected mosquitoes released per house http://purl.obolibrary.org/obo/APOLLO_SV_00000310 vector control action specification A vector control action specification that specifies the number of Wolbachia-infected adult mosquitoes to be released at each household for some Wolbachia control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000427 clear Wolbachia upon vector migration http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that when set to true, results in the simuator clearing each simulated Wolbachia-infected mosquito of its simulated Wolbachia infection whenever it migrates out of the simulated population location. http://purl.obolibrary.org/obo/APOLLO_SV_00000428 disease outcome with probability http://purl.obolibrary.org/obo/OBI_0302867 calculated datum A predicted data item expressing the probability that a disease outcome occurs during the disease course of an organism. http://purl.obolibrary.org/obo/APOLLO_SV_00000429 date http://purl.obolibrary.org/obo/APOLLO_SV_00000395 name of temporal region A name of a temporal region that is systematized according to a particular calendar system, such as the Gregorian calendar. http://purl.obolibrary.org/obo/APOLLO_SV_00000430 ring diameter in meters http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification A scalar value specification that gives the diameter in meters of the circular area around which all organisms in a population are living will receive a vaccination as part of a ring vaccination control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000431 Wolbachia effect on mating probability http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator actions specification that specifies the factor by which to multiply the mating probability of a male mosquito if it is infected with a Wolbachia bacterium. http://purl.obolibrary.org/obo/APOLLO_SV_00000432 minimum value http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies the smallest numerical value in a data set of scalar measurement data items. http://purl.obolibrary.org/obo/APOLLO_SV_00000433 maximum value http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies the largest numerical value in a data set of scalar measurement data itmes. http://purl.obolibrary.org/obo/APOLLO_SV_00000434 statistical confidence http://purl.obolibrary.org/obo/OBI_0302867 calculated datum A predicted data item that estimates how reliable some method of statistical inference will be at estimating the population parameter of interest. http://purl.obolibrary.org/obo/APOLLO_SV_00000436 lower bound http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that delimits an interval data structure based on some value that is less than or equal to all other values within that data structure. http://purl.obolibrary.org/obo/APOLLO_SV_00000437 fraction of vector adults affected http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the fraction of a particular adult vector population that have undergone 1) infection acquisition with a pathogen, and 2) have experienced some outcome of the resulting infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000438 fraction reduction of eggs http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the fraction of eggs laid by a particular host population that has been destroyed and thus will not develop into a new member of the population. http://purl.obolibrary.org/obo/APOLLO_SV_00000439 fraction reduction of larvae http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the fraction of the larval subpopulation of a particular host population that has died due to some event in the population (e.g, due to a particular control measure). http://purl.obolibrary.org/obo/APOLLO_SV_00000440 vector bite radius http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum A length measurement datum that specifies the radius of a circle, which is centered at a vector organism, for which there is a certain probability that the vector organism will bite a susceptible host. http://purl.obolibrary.org/obo/APOLLO_SV_00000441 time between vector bites http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures the temporal interval between some vector bite n and some vector bite n+1. http://purl.obolibrary.org/obo/APOLLO_SV_00000442 migration speed http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum A rate measurement datum of that divides the total distance traveled during some migration process by the duration of the temporal interval occupied by that process. http://purl.obolibrary.org/obo/APOLLO_SV_00000443 shade affinity http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability An information content entity that specifies the probability that a given mosquito will realize a disposition to seek out a shaded environment when it isn't seeking a host or ovisite. http://purl.obolibrary.org/obo/APOLLO_SV_00000444 movement speed http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum A rate measurement datum that specifies the ratio of distance travelled during a movement process to the duration of the time interval occupied by the process. http://purl.obolibrary.org/obo/APOLLO_SV_00000445 mortality rate http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum A rate measurement datum that specifies the percentage of organisms within a population that have died over a given time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000446 ratio of outdoor to indoor ovisites http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies, as a ratio, the total count of oviposition sites located externally to all places in a geographic region relative to the total count of oviposition sites located internally to some place in that geographic region. http://purl.obolibrary.org/obo/APOLLO_SV_00000447 upper bound http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that delimits an interval data structure based on some value that is greater than or equal to all other values within that data structure. http://purl.obolibrary.org/obo/APOLLO_SV_00000449 quarantine period http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration of some process wherein one or more potentially infectious contact organisms (i.e., contacted organisms) are under physical isolation from other organisms within a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000450 mosquito mating probability http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probability that some male mosquito and some female mosquito within a certain distance of each other realize some disposition to reproduce with one another. http://purl.obolibrary.org/obo/APOLLO_SV_00000451 affinity for buildings http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability An information content entity that specifies the probability that a given mosquito realizes some disposition to seek out a building if it isn't seeking a host or ovisite. http://purl.obolibrary.org/obo/APOLLO_SV_00000452 linear distance travelled between oviposits http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the linear distance a female mosquito will travel to find the next oviposition site after depositing some of its eggs at the previous one. http://purl.obolibrary.org/obo/APOLLO_SV_00000453 eggs per brood http://purl.obolibrary.org/obo/OBI_0000679 average value An average value that specifies the number of eggs produced during one reproductive cycle for each individual female within a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000454 efficacy http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition of an organism to (i) undergo some bodily benefit that (ii) is triggered by a planned process. http://purl.obolibrary.org/obo/APOLLO_SV_00000455 prodromal period http://purl.obolibrary.org/obo/BFO_0000015 process A temporal part of a disease course that itself has a temporal part of becoming symptomatic, followed by another temporal part that is characterized by the organism experiencing mild, non-disease-specific symptoms. http://purl.obolibrary.org/obo/APOLLO_SV_00000456 fulminant period http://purl.obolibrary.org/obo/BFO_0000015 process A temporal part of a disease course that 1) itself has a temporal part of becoming severely symptomatic, 2) terminates in either death or some bodily harm, and 3) has a sudden onset and short duration. http://purl.obolibrary.org/obo/APOLLO_SV_00000457 vector bite probability http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probablity that a female mosquito feeds on or probes the host given an interaction between the mosquito and the host that brings them within a certain proximity (the bite radius). http://purl.obolibrary.org/obo/APOLLO_SV_00000458 male mosquito mating radius http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum A length measurement datum that specifies the radius of a circle, which is centered at a male vector organism, for which there is some probability that it will mate with a female mosquito. http://purl.obolibrary.org/obo/APOLLO_SV_00000459 infectious disease control strategy cover radius http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum A length measurement datum that specifies the radius of a circle that defines the geographical region in which some infectious disease control strategy will be implemented. http://purl.obolibrary.org/obo/APOLLO_SV_00000460 species of treated organism http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier curated by the NCBI taxonomy database that specifies the taxonomic classification of some organism that is the recipient of some treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000461 drug identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes a drug product. http://purl.obolibrary.org/obo/APOLLO_SV_00000462 mean median minimum maximum summary statistics data structure http://purl.obolibrary.org/obo/OBI_0000658 data representational model A data structure that holds the mean, median, minimum value, and maximum value of one set of measurement data. http://purl.obolibrary.org/obo/APOLLO_SV_00000463 heterogenous carrying capacity http://purl.obolibrary.org/obo/IAO_0000001 conditional specification A conditional specification for some epidemic simulator that is triggered by a Boolean value that, if true, specifies that there is a non-uniform distribution of oviposition site carrying capacities in a simulated vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000464 seed site http://purl.obolibrary.org/obo/BFO_0000029 site A site that is the bearer of a role that is realized by the release of artificially-infected vectors for the purpose of infecting the local vector population with a certain pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000465 seed release interval http://purl.obolibrary.org/obo/APOLLO_SV_00000310 vector control action specification A vector control action specification that is realized by releasing artificially-infected vector organisms at the specified time intervals. http://purl.obolibrary.org/obo/APOLLO_SV_00000466 vector release site action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000310 vector control action specification A vector control action specification that specifies the location of vector release sites according to some predetermined spatial interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000467 number of artificially-infected vectors released per house http://purl.obolibrary.org/obo/APOLLO_SV_00000310 vector control action specification A vector control action specification that specifies the number of artificially-infected vectors to be released at each household. http://purl.obolibrary.org/obo/APOLLO_SV_00000468 clear infection upon vector migration http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that, when set to true, results in the simulator clearing each simulated artificially-infected vector of its simulated infection whenever it migrates out of the simulated population location. http://purl.obolibrary.org/obo/APOLLO_SV_00000469 SNOMED concept identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier curated by IHTSDO that refers to some representational unit within its class hierarchy. http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is about a proposition and has a numeric value between 0 and 1, inclusive, that is the output of some process of inference, such that 1) logical falsehoods and logical truths are assigned a value of 0 and 1, respectively, while contingent propositions are assigned some intermediate value; and 2) the process of inference conforms with rules for the calculation of probabilities, and that any interpretation of probability must specify the extent to which probabilities might be used to constrain the degrees of belief of rational agents. http://purl.obolibrary.org/obo/APOLLO_SV_00000471 minimum eggs per oviposition site http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the minimum number of eggs that any simulated female mosquito will oviposit during a gonotrophic cycle. http://purl.obolibrary.org/obo/APOLLO_SV_00000472 age-dependent fecundity reduction http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum A rate measurement datum that measures the percentage decrease per unit time (typically per day) in the number of offspring to which a female mosquito passes an infection with a particular pathogen (e.g., Wolbachia). http://purl.obolibrary.org/obo/APOLLO_SV_00000473 carrying capacity per house http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the maximum number of larvae that can exist across all ovisites in a given house. http://purl.obolibrary.org/obo/APOLLO_SV_00000474 reactive control measure operator http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification An epidemic simulator action specification that specifies the comparison operation to use to determine whether some value, relative to a threshold, is one that should trigger the implementation of a control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000476 description http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that specifies characteristics of some entity. http://purl.obolibrary.org/obo/APOLLO_SV_00000477 parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000215 probability distribution A probability distribution where the probability of each outcome is the range of a function (whose domain is the outcomes) that is calculated using one or more constant values (called parameters). http://purl.obolibrary.org/obo/APOLLO_SV_00000478 seed infections into vector population control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy A vector control strategy that has 1) an action specification that is realized in releasing artificially-infected vector organisms into a vector population, and 2) an objective specification of spreading this infection throughtout the vector population. http://purl.obolibrary.org/obo/APOLLO_SV_00000479 ovisite carrying capacity http://purl.obolibrary.org/obo/OBI_0302867 calculated datum A predicted data item that is the maximum value of larvae that some ovisite is capable of sustaining. http://purl.obolibrary.org/obo/APOLLO_SV_00000480 geographical movement of organism http://purl.obolibrary.org/obo/GO_0007610 behavior A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000481 cut-off point specification http://purl.obolibrary.org/obo/IAO_0000007 action specification An action specification that delineates some minimum value or maximum value for some test statistic within a continuous probability distribution that is meant to serve as a lower bound or upper bound, respectively, for some population or sample of interest. http://purl.obolibrary.org/obo/APOLLO_SV_00000482 prodromal period duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures a temporal region occupied by a prodromal period. http://purl.obolibrary.org/obo/APOLLO_SV_00000483 fulminant period duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures a temporal region occupied by a fulminant period. http://purl.obolibrary.org/obo/APOLLO_SV_00000484 identifier of species of diseased organism http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier curated by the NCBI taxonomy database that has been used to specify the species of some organism in which some disease has been realized. http://purl.obolibrary.org/obo/APOLLO_SV_00000485 identifier for species of case http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier curated by the NCBI taxonomy database that has been used to identify the species of some organism that meets a case definition. http://purl.obolibrary.org/obo/APOLLO_SV_00000486 travel-related infectious disease control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that has an objective specification of preventing infection acquisition by organisms traveling from one ecosystem to another ecosystem. http://purl.obolibrary.org/obo/APOLLO_SV_00000487 travel recommendation control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000486 travel-related infectious disease control strategy A travel-related infectious disease control strategy that has an action specification that is realized by making recommendations to travelers to either (1) avoid travel to an ecosystem with an ongoing infection such as an epidemic, (2) take precautions when traveling to such an ecosystem, (3) receive certain vaccinations prior to traveling to such an ecosystem, or (4) take certain medications when traveling to such an ecosystem http://purl.obolibrary.org/obo/APOLLO_SV_00000489 contact isolation control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000230 case isolation control strategy A case isolation control measure that has an action specification that is realized in preventing one or more infectious organisms from having physical contact with other organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000490 colonization duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures the temporal interval occupied by some colonization. http://purl.obolibrary.org/obo/APOLLO_SV_00000491 identifier of species of population http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier A taxonomy identifier curated by the National Center for Biotechnology Information that specifies the taxonomic classification of some population of organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000492 RxNorm drug concept identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier curated by the National Library of Medicine as a unique string of integer numerals to be used as a standard way of denoting each concept in the RxNorm terminology. http://purl.obolibrary.org/obo/APOLLO_SV_00000493 LOINC identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier curated by the Regenstrief Institute to be used as a standard way of denoting each term in the LOINC database. http://purl.obolibrary.org/obo/APOLLO_SV_00000494 laboratory test LOINC identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000493 LOINC identifier A LOINC identifier that refers to some clinical laboratory test conducted in a particular context.. http://purl.obolibrary.org/obo/APOLLO_SV_00000495 PubMed identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier curated by the United States National Library of Medicine and National Institutes of Health that denotes some publication record in the MEDLINE database. http://purl.obolibrary.org/obo/APOLLO_SV_00000497 count of disease cases http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count A count of individuals in a population who meet the criteria of some case definition during some time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000499 insecticide-treated net control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000414 adult vector control strategy An adult vector control strategy that has 1) an action specification that is realized by the use of insecticide-treated nets within households, and 2) an objective specification that is realized by preventing potentially infectious contacting between some mosquito vector and some human host. http://purl.obolibrary.org/obo/APOLLO_SV_00000500 schedule http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification that specifies 1) the quantity of which some material entity will be allocated to the eventual realization of some action specification, and 2) the temporal regions in which each action specification is to be realized. http://purl.obolibrary.org/obo/APOLLO_SV_00000501 population colonization census http://purl.obolibrary.org/obo/APOLLO_SV_00000153 population census A population census about the organisms specific to that population that were the host in some colonization acquisition. http://purl.obolibrary.org/obo/APOLLO_SV_00000502 drug treatment efficacy http://purl.obolibrary.org/obo/APOLLO_SV_00000454 efficacy The efficacy measured for some instance(s) of drug treatment for preventing or ameliorating some disease outcome. http://purl.obolibrary.org/obo/APOLLO_SV_00000503 latitude and longitude coordinate pair http://purl.obolibrary.org/obo/GEO_000000788 geodetic datum A data set that comprises exactly one latitude measurement datum and exactly one longitude measurement datum as its elements, and optiionally the geodetic datum used as the coordinate system for the measurements, and each of these measurements is about the same zero-dimensional geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000504 age in years datum http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that refers to the temporal interval occupied by the life course of some organism and that takes 'years' as its measurement unit label. http://purl.obolibrary.org/obo/APOLLO_SV_00000505 contamination period duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures a temporal region occupied by some contamination. http://purl.obolibrary.org/obo/APOLLO_SV_00000506 healthcare facility identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000508 facility identifier A healthcare facility identifier that refers to some architectural structure that is the bearer of some healthcare function. http://purl.obolibrary.org/obo/APOLLO_SV_00000507 disease transmission model identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to some disease transmission model model. http://purl.obolibrary.org/obo/APOLLO_SV_00000508 facility identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes some architectural structure. http://purl.obolibrary.org/obo/APOLLO_SV_00000509 taxonomy identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes a biological taxonomic group. http://purl.obolibrary.org/obo/APOLLO_SV_00000510 disease case identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes an organism included in some infection case count. http://purl.obolibrary.org/obo/APOLLO_SV_00000512 rate of hydrological precipitation http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum A rate measurement datum that is the result of the measurement of the volume of water produced by some hydrological precipitation process at a particular geographical region divided by the number of temporal intervals of equal duration over which the precipitation occurred. http://purl.obolibrary.org/obo/APOLLO_SV_00000513 mean rate of hydrological precipitation http://purl.obolibrary.org/obo/OBI_0000679 average value An average value that takes, as input, some set of rate of hydrological precipitation data that were recorded over a particular duration of time. http://purl.obolibrary.org/obo/APOLLO_SV_00000514 mean air temperature http://purl.obolibrary.org/obo/OBI_0000679 average value An average value that takes, as input, some set of air temperature measurement data that were recorded over a particular duration of time. http://purl.obolibrary.org/obo/APOLLO_SV_00000515 potentially infectious sexual contacting http://purl.obolibrary.org/obo/NBO_0000034 sexual activity A sexual activity with at least one infectious host as participant where the infectious host(s) are infected with a pathogen that has a disposition to infect the tissues of the non-infected host that came into physical contact with the infectious host during the activity. http://purl.obolibrary.org/obo/APOLLO_SV_00000517 prioritization scheme for control measure http://purl.obolibrary.org/obo/IAO_0000007 action specification An action specification that is part of an infectious disease control strategy that has at least one rule pertaining to some control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000518 one-way sensitivity analysis of a continuous variable http://purl.obolibrary.org/obo/OBI_0200000 data transformation A data transformation that takes as its input exactly one continuous variable as a value and assesses whether any statistically significant change to that variable will produce some change to the model's output. http://purl.obolibrary.org/obo/APOLLO_SV_00000519 citation identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that is an integer numeral that denotes some citation. http://purl.obolibrary.org/obo/APOLLO_SV_00000520 location of sampling process http://purl.obolibrary.org/obo/GEO_000000372 geographical region A geographic region that contains a sampling process. http://purl.obolibrary.org/obo/APOLLO_SV_00000526 scale-free network model http://purl.obolibrary.org/obo/IAO_0000064 algorithm An algorithm that models some scale-free network. http://purl.obolibrary.org/obo/APOLLO_SV_00000527 scale-free network http://purl.obolibrary.org/obo/OBI_0000714 graph of vertices A graph of vertices in which, for some fraction of vertices, P(k), the number of connections, k, varies as a power of some parameter, γ. In other words, P(k) ~ k^(-γ), where 2 < γ < 3. http://purl.obolibrary.org/obo/APOLLO_SV_00000528 synthetic ecosystem data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that represents 1) one or more collections of organisms at some time and some geographical region; and optionally 2) the school facilities, workplace facilities, and health care facilities in that region. http://purl.obolibrary.org/obo/APOLLO_SV_00000529 conditional probability http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability A probability whose value is dependent upon the occurrence, known or presumed, of some process. http://purl.obolibrary.org/obo/APOLLO_SV_00000530 probability of infection over time http://purl.obolibrary.org/obo/APOLLO_SV_00000529 conditional probability A conditional probability whose value is dependent upon the duration of some colonization or infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000531 epidemic threshold http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that specifies the number of susceptible organisms necessary for an epidemic to occur within a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000532 human travel http://purl.obolibrary.org/obo/APOLLO_SV_00000480 geographical movement of organism A geographical migration of an organism belonging to the species Homo sapiens. http://purl.obolibrary.org/obo/APOLLO_SV_00000533 human air travel http://purl.obolibrary.org/obo/APOLLO_SV_00000532 human travel Human travel that involves 1) movement from one geographical region to another through the air as a temporal proper part, and 2) the use of some processed material (e.g., airplane, hang glider) for propulsion that has some function of mechanical flight. http://purl.obolibrary.org/obo/APOLLO_SV_00000534 human mobility data item http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is about one or more instances of human travel, and that specifies the geographical start location, geographical end location, and the geographical regions visited throughout the process. http://purl.obolibrary.org/obo/APOLLO_SV_00000535 software license http://purl.obolibrary.org/obo/APOLLO_SV_00000798 copyright license A copyright license that is about some software and contains one or more conditional specifications that specify the use and redistribution of the software. http://purl.obolibrary.org/obo/APOLLO_SV_00000536 complete software license identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a specific software license. http://purl.obolibrary.org/obo/APOLLO_SV_00000537 software license version identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that, as part of a complete software license identifier, refers to one specific version of the software license. http://purl.obolibrary.org/obo/APOLLO_SV_00000538 software license identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to all versions of a specific software license. http://purl.obolibrary.org/obo/APOLLO_SV_00000539 software license URL http://purl.obolibrary.org/obo/OMIABIS_0000019 unique resource locator A unique resource locator that constitutes a reference to some software license. http://purl.obolibrary.org/obo/APOLLO_SV_00000540 population dynamics model http://purl.obolibrary.org/obo/APOLLO_SV_00000007 simulation software application An simulation software application that when realized simulates changes in the size and life stage distribution of a population or populations of organisms of a particular biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000541 disease surveillance objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification whose endpoint is human awareness of the level of a particular disease in a particular population of a given biological taxon during some time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000542 mortality data http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000545 disease surveillance http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that is the realization of a disease surveillance objective specification. http://purl.obolibrary.org/obo/IAO_0000646 postal code http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail. http://purl.obolibrary.org/obo/IAO_0000647 Postal delivery route http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000619 population density datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is about some population and is normalized by unit land area in a particular geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000620 physical distancing infectious disease control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An individual treatment control strategy in which individuals maintain a certain distance from other individuals during a social act. http://purl.obolibrary.org/obo/APOLLO_SV_00000621 lockdown infectious disease control measure http://purl.obolibrary.org/obo/APOLLO_SV_00000229 place closure control strategy A place closure control strategy in which only selected places in a geographical region are permitted to stay open and travel is permitted only for people employed by certain organizations. http://purl.obolibrary.org/obo/PATO_0000001 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities http://purl.obolibrary.org/obo/PATO_0000040 distance http://purl.obolibrary.org/obo/PATO_0001018 physical quality A quality that is the extent of space between two entities. http://purl.obolibrary.org/obo/PATO_0000051 morphology http://purl.obolibrary.org/obo/PATO_0001241 physical object quality A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. http://purl.obolibrary.org/obo/PATO_0000117 size http://purl.obolibrary.org/obo/PATO_0000051 morphology A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. http://purl.obolibrary.org/obo/PATO_0000141 structure http://purl.obolibrary.org/obo/PATO_0000051 morphology A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. http://purl.obolibrary.org/obo/PATO_0001018 physical quality http://purl.obolibrary.org/obo/PATO_0001241 physical object quality A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. http://purl.obolibrary.org/obo/PATO_0001241 physical object quality http://purl.obolibrary.org/obo/BFO_0000019 quality A quality which inheres in a continuant. http://purl.obolibrary.org/obo/PATO_0001323 area http://purl.obolibrary.org/obo/PATO_0001709 2-D extent A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. http://purl.obolibrary.org/obo/PATO_0001708 1-D extent http://purl.obolibrary.org/obo/PATO_0000117 size A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. http://purl.obolibrary.org/obo/PATO_0001709 2-D extent http://purl.obolibrary.org/obo/PATO_0000117 size A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions. http://purl.obolibrary.org/obo/PATO_0001961 in contact with http://purl.obolibrary.org/obo/PATO_0000141 structure A structural quality inhering in a bearer by virtue of the bearer's touching another entity. http://purl.obolibrary.org/obo/PATO_0002390 radius http://purl.obolibrary.org/obo/PATO_0000122 length A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter. http://purl.obolibrary.org/obo/UBERON_0035943 life cycle temporal boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity. http://purl.obolibrary.org/obo/APOLLO_SV_00000587 intensive care unit encounter http://purl.obolibrary.org/obo/OGMS_0000100 inpatient encounter An inpatient encounter in which the health care provider role is realized by some person employed by the intensive care department of some health care facility, and the patient role is realized by someone admitted to that intensive care department. http://purl.obolibrary.org/obo/OMRSE_00000142 human traveling information http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about human travel. http://purl.obolibrary.org/obo/APOLLO_SV_00000575 epidemic start week http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification A scalar value specification whose measurement unit label is 'week' and that is part of the first predicted data item that is greater than the epidemic threshold set for that data item. http://purl.obolibrary.org/obo/APOLLO_SV_00000576 epidemic peak week http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification A scalar value specification whose measurement unit label is 'week', and that is part of the epidemic peak intensity. http://purl.obolibrary.org/obo/APOLLO_SV_00000577 epidemic peak intensity http://purl.obolibrary.org/obo/OBI_0302867 calculated datum A predicted data item that is about some aggregate of cases in an epidemic and whose value specification contains the maximum value in a data set that is about the epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000580 infectious disease nowcast http://purl.obolibrary.org/obo/APOLLO_SV_00000579 infectious disease forecast An infectious disesae forecast that realizes some infectious disease nowcasting software. http://purl.obolibrary.org/obo/APOLLO_SV_00000581 infectious disease forecast objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that is realized by the estimation of one or more predicted data items that are about 1) some infection in ecosystem and 2) potential changes to its number of participants (e.g., individuals within a host population, individuals within a vector population) relative to a particular temporal region; and is part of some infectious disease forecasting software. http://purl.obolibrary.org/obo/APOLLO_SV_00000582 infectious disease nowcast objective specification http://purl.obolibrary.org/obo/APOLLO_SV_00000581 infectious disease forecast objective specification An infectious disease forecasting objective specification that is realized by the estimation of one or more predicted data items that are about some infection in ecosystem as they are occurring in real time, and is part of some infectious disease nowcasting software. http://purl.obolibrary.org/obo/APOLLO_SV_00000583 infectious disease nowcaster http://purl.obolibrary.org/obo/APOLLO_SV_00000557 infectious disease forecaster An infectious disease forecasting software application that predicts how many infections are occurring within the same temporal interval that the data items are being estimated. http://purl.obolibrary.org/obo/APOLLO_SV_00000584 prospective infectious disease forecast http://purl.obolibrary.org/obo/APOLLO_SV_00000579 infectious disease forecast An infectious disease forecast that has specified input some data set, the data items of which are about an infection in ecosystem that is current concomitant with the forecasting software’s executable code being realized. http://purl.obolibrary.org/obo/APOLLO_SV_00000585 prospective infectious disease nowcast http://purl.obolibrary.org/obo/APOLLO_SV_00000580 infectious disease nowcast An infectious disease nowcast that has specified input some data set, the data items of which are about an infection in ecosystem that is current concomitant with the forecasting software’s executable code being realized. http://purl.obolibrary.org/obo/APOLLO_SV_00000592 metagenomics analysis software http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that has as part an objective specification that is achieved by only a metagenomics analysis. http://purl.obolibrary.org/obo/APOLLO_SV_00000594 atmospheric data set http://purl.obolibrary.org/obo/APOLLO_SV_00000593 abiotic ecosystem data set A data set that is about either the Earth's atmosphere or some part of the Earth's atmosphere. http://purl.obolibrary.org/obo/APOLLO_SV_00000596 symbiosis http://purl.obolibrary.org/obo/GO_0044419 biological process involved in interspecies interaction between organisms An interspecies interaction between two or more organisms in intimate association. http://purl.obolibrary.org/obo/MF_0000073 intentionality http://purl.obolibrary.org/obo/MF_0000075 mental quality Intentionality is the fundamental quality of conscious mental processes of always having content, of being directed towards, or about something. http://purl.obolibrary.org/obo/MF_0000074 bodily quality http://purl.obolibrary.org/obo/BFO_0000019 quality A bodily quality is a quality that inheres in some extended organism. http://purl.obolibrary.org/obo/MF_0000075 mental quality http://purl.obolibrary.org/obo/MF_0000074 bodily quality A mental quality is a bodily quality that inheres in those structures of the extended organism that are essential for mental functioning. http://purl.obolibrary.org/obo/DOID_3292 monkeypox http://purl.obolibrary.org/obo/APOLLO_SV_00000239 infectious disease A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy. http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that has temporal parts and that happens, unfolds or develops through time. http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable entity A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/BFO_0000015 process b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) http://purl.obolibrary.org/obo/BFO_0000145 relational quality http://purl.obolibrary.org/obo/BFO_0000019 quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) http://purl.obolibrary.org/obo/ENVO_00010483 environmental material http://purl.obolibrary.org/obo/BFO_0000040 material entity A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. http://purl.obolibrary.org/obo/IAO_0000001 conditional specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity that specifies what should happen if the trigger condition is fulfilled. http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/IAO_0000009 data item label A data item label that denotes a unit of measure. http://purl.obolibrary.org/obo/IAO_0000006 narrative object http://purl.obolibrary.org/obo/IAO_0000030 information content entity A narrative object is an information content entity that is a set of propositions. http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity that describes an action the bearer will take. http://purl.obolibrary.org/obo/IAO_0000010 software http://purl.obolibrary.org/obo/IAO_0000104 plan specification Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit. http://purl.obolibrary.org/obo/IAO_0000012 obsolete2_digital entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical. http://purl.obolibrary.org/obo/IAO_0000013 journal article http://purl.obolibrary.org/obo/IAO_0000311 publication A report that is published in a journal. http://purl.obolibrary.org/obo/IAO_0000015 information carrier http://purl.obolibrary.org/obo/BFO_0000019 quality A quality of an information bearer that imparts the information content http://purl.obolibrary.org/obo/IAO_0000017 model number http://purl.obolibrary.org/obo/IAO_0000028 symbol A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots. http://purl.obolibrary.org/obo/IAO_0000019 obsolete2_binary digital entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters. http://purl.obolibrary.org/obo/IAO_0000024 obsolete_unit of measure http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class a unit of measure is the quality of some material entity compared to which another quality is some multiple of. http://purl.obolibrary.org/obo/IAO_0000025 programming language http://purl.obolibrary.org/obo/IAO_0000104 plan specification A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it. http://purl.obolibrary.org/obo/IAO_0000028 symbol http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity. http://purl.obolibrary.org/obo/IAO_0000029 numeral http://purl.obolibrary.org/obo/IAO_0000028 symbol A symbol that denotes a number. http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A generically dependent continuant that is about some thing. http://purl.obolibrary.org/obo/IAO_0000031 integer numeral http://purl.obolibrary.org/obo/IAO_0000029 numeral A numeral that denotes an integer http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label. http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. http://purl.obolibrary.org/obo/IAO_0000037 dot plot http://purl.obolibrary.org/obo/IAO_0000038 graph A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions. http://purl.obolibrary.org/obo/IAO_0000038 graph http://purl.obolibrary.org/obo/IAO_0000309 diagram A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way. http://purl.obolibrary.org/obo/IAO_0000047 obsolete2_text based digital entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A text based digital entity is a digital entity that is encoded so that it only contains text characters. http://purl.obolibrary.org/obo/IAO_0000055 rule http://purl.obolibrary.org/obo/IAO_0000001 conditional specification A rule is an executable which guides, defines, restricts actions. http://purl.obolibrary.org/obo/IAO_0000059 obsolete2_report figure http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements http://purl.obolibrary.org/obo/IAO_0000064 algorithm http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. http://purl.obolibrary.org/obo/IAO_0000065 software interpreter http://purl.obolibrary.org/obo/IAO_0000064 algorithm A software interpreter is a software application that executes some specified input software. http://purl.obolibrary.org/obo/IAO_0000078 curation status specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000079 density plot http://purl.obolibrary.org/obo/IAO_0000038 graph A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel. http://purl.obolibrary.org/obo/IAO_0000088 report http://purl.obolibrary.org/obo/IAO_0000310 document A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record). http://purl.obolibrary.org/obo/IAO_0000091 obsolete_report element http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page). http://purl.obolibrary.org/obo/IAO_0000093 obsolete2_binary executable http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007) http://purl.obolibrary.org/obo/IAO_0000096 source code module http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A source code module is a directive information entity that specifies, using a programming language, some algorithm. http://purl.obolibrary.org/obo/IAO_0000097 obsolete_report table http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content http://purl.obolibrary.org/obo/IAO_0000098 data format specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file http://purl.obolibrary.org/obo/IAO_0000100 data set http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets. http://purl.obolibrary.org/obo/IAO_0000101 image http://purl.obolibrary.org/obo/IAO_0000308 figure An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface. http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part http://purl.obolibrary.org/obo/IAO_0000027 data item Data about an ontology part is a data item about a part of an ontology, for example a term http://purl.obolibrary.org/obo/IAO_0000104 plan specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified. http://purl.obolibrary.org/obo/IAO_0000105 obsolete2_digital document http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications. The digital document does not refer to the information content of the document but to an instance of the file. http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.obolibrary.org/obo/IAO_0000027 data item A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. http://purl.obolibrary.org/obo/IAO_0000129 version number http://purl.obolibrary.org/obo/IAO_0000028 symbol A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name. http://purl.obolibrary.org/obo/IAO_0000131 serial number http://purl.obolibrary.org/obo/IAO_0000028 symbol A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots. http://purl.obolibrary.org/obo/IAO_0000140 setting datum http://purl.obolibrary.org/obo/IAO_0000027 data item A settings datum is a datum that denotes some configuration of an instrument. http://purl.obolibrary.org/obo/IAO_0000144 conclusion textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers. http://purl.obolibrary.org/obo/IAO_0000178 material information bearer http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity in which a concretization of an information content entity inheres. http://purl.obolibrary.org/obo/IAO_0000179 histogram http://purl.obolibrary.org/obo/IAO_0000038 graph A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes. http://purl.obolibrary.org/obo/IAO_0000180 heatmap http://purl.obolibrary.org/obo/IAO_0000038 graph A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map. http://purl.obolibrary.org/obo/IAO_0000181 Venn diagram http://purl.obolibrary.org/obo/IAO_0000038 graph A Venn diagram is a report graph showing all hypothetically possible logical relations between a finite collection of sets. http://purl.obolibrary.org/obo/IAO_0000182 obsolete_survival curve http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time. http://purl.obolibrary.org/obo/IAO_0000183 dendrogram http://purl.obolibrary.org/obo/IAO_0000038 graph A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm. http://purl.obolibrary.org/obo/IAO_0000185 photograph http://purl.obolibrary.org/obo/IAO_0000101 image A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc. http://purl.obolibrary.org/obo/IAO_0000186 photographic print http://purl.obolibrary.org/obo/IAO_0000178 material information bearer A photographic print is a material entity upon which a photograph generically depends. http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000301 citation http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity intended to identify a particular publication. http://purl.obolibrary.org/obo/IAO_0000302 author identification http://purl.obolibrary.org/obo/IAO_0000590 written name A textual entity intended to identify a particular author http://purl.obolibrary.org/obo/IAO_0000303 institutional identification http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity intended to identify a particular institution http://purl.obolibrary.org/obo/IAO_0000304 caption http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes a figure http://purl.obolibrary.org/obo/IAO_0000305 document title http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that names a document http://purl.obolibrary.org/obo/IAO_0000306 table http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions http://purl.obolibrary.org/obo/IAO_0000307 table of abbreviations http://purl.obolibrary.org/obo/IAO_0000306 table A table where the constituent texts are abbreviations and their expansions http://purl.obolibrary.org/obo/IAO_0000308 figure http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something. http://purl.obolibrary.org/obo/IAO_0000309 diagram http://purl.obolibrary.org/obo/IAO_0000308 figure A figure that expresses one or more propositions http://purl.obolibrary.org/obo/IAO_0000310 document http://purl.obolibrary.org/obo/IAO_0000030 information content entity A collection of information content entities intended to be understood together as a whole http://purl.obolibrary.org/obo/IAO_0000313 patent http://purl.obolibrary.org/obo/IAO_0000310 document A document that has been accepted by a patent authority http://purl.obolibrary.org/obo/IAO_0000314 document part http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is part of a document. http://purl.obolibrary.org/obo/IAO_0000321 author list http://purl.obolibrary.org/obo/IAO_0000314 document part A part of a document that enumerates the authors of the document http://purl.obolibrary.org/obo/IAO_0000322 institution list http://purl.obolibrary.org/obo/IAO_0000314 document part A part of a document that has parts that are institution identifications associated with the authors of the document http://purl.obolibrary.org/obo/IAO_0000327 table of contents http://purl.obolibrary.org/obo/IAO_0000306 table A table that relates document parts to specific locations in a document (usually page numbers). This is also a document part (subsumption there should be inferred). http://purl.obolibrary.org/obo/IAO_0000328 table of figures http://purl.obolibrary.org/obo/IAO_0000306 table A table that relates figures in a document to specific locations in that document (usually page numbers). This is also a document part (subsumption there should be inferred). http://purl.obolibrary.org/obo/IAO_0000329 running title http://purl.obolibrary.org/obo/IAO_0000305 document title A shorter version of a document title http://purl.obolibrary.org/obo/IAO_0000330 copyright section http://purl.obolibrary.org/obo/IAO_0000314 document part A document part that describes legal restrictions on making or distributing copies of the document http://purl.obolibrary.org/obo/IAO_0000400 cartesian spatial coordinate datum http://purl.obolibrary.org/obo/IAO_0000027 data item A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude http://purl.obolibrary.org/obo/IAO_0000401 one dimensional cartesian spatial coordinate datum http://purl.obolibrary.org/obo/IAO_0000400 cartesian spatial coordinate datum A cartesion spatial coordinate datum that uses one value to specify a position along a one dimensional spatial region http://purl.obolibrary.org/obo/IAO_0000402 two dimensional cartesian spatial coordinate datum http://purl.obolibrary.org/obo/IAO_0000400 cartesian spatial coordinate datum A cartesion spatial coordinate datum that uses two values to specify a position within a two dimensional spatial region http://purl.obolibrary.org/obo/IAO_0000403 three dimensional cartesian spatial coordinate datum http://purl.obolibrary.org/obo/IAO_0000400 cartesian spatial coordinate datum A cartesion spatial coordinate datum that uses three values to specify a position within a three dimensional spatial region http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measurement of length quality http://purl.obolibrary.org/obo/IAO_0000409 denotator type http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part A denotator type indicates how a term should be interpreted from an ontological perspective. http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measurement of mass quality http://purl.obolibrary.org/obo/IAO_0000415 hypothesis textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses an assertion that is intended to be tested. http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measuring a temporal interval http://purl.obolibrary.org/obo/IAO_0000422 postal address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is used as directive to deliver something to a person, or organization http://purl.obolibrary.org/obo/IAO_0000442 author role http://purl.obolibrary.org/obo/BFO_0000023 role A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name. http://purl.obolibrary.org/obo/IAO_0000443 data item extraction from journal article http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing http://purl.obolibrary.org/obo/IAO_0000572 documenting http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A planned process in which a document is created or added to by including the specified input in it. http://purl.obolibrary.org/obo/IAO_0000576 obsolete_establishing a CRID registry http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID. http://purl.obolibrary.org/obo/IAO_0000590 written name http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that denotes a particular in reality. http://purl.obolibrary.org/obo/IAO_0000591 software method http://purl.obolibrary.org/obo/IAO_0000010 software A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task. http://purl.obolibrary.org/obo/IAO_0000592 software module http://purl.obolibrary.org/obo/IAO_0000010 software A software module is software composed of a collection of software methods. http://purl.obolibrary.org/obo/IAO_0000593 software library http://purl.obolibrary.org/obo/IAO_0000010 software A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application. http://purl.obolibrary.org/obo/IAO_0000594 software application http://purl.obolibrary.org/obo/IAO_0000010 software A software application is software that can be directly executed by some processing unit. http://purl.obolibrary.org/obo/IAO_0000595 software script http://purl.obolibrary.org/obo/IAO_0000010 software A software script is software whose instructions can be executed using a software interpreter. http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process A process that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000047 processed material http://purl.obolibrary.org/obo/BFO_0000040 material entity Is a material entity that is created or changed during material processing. http://purl.obolibrary.org/obo/OBI_0000066 investigation http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). http://purl.obolibrary.org/obo/OBI_0000115 intervention design http://purl.obolibrary.org/obo/OBI_0500000 study design An intervention design is a study design in which a controlled process applied to the subjects (the intervention) serves as the independent variable manipulated by the experimentalist. The treatment (perturbation or intervention) defined can be defined as a combination of values taken by independent variable manipulated by the experimentalists are applied to the recruited subjects assigned (possibly by applying specific methods) to treatment groups. The specificity of intervention design is the fact that independent variables are being manipulated and a response of the biological system is evaluated via response variables as monitored by possibly a series of assays. http://purl.obolibrary.org/obo/OBI_0000227 data encoding http://purl.obolibrary.org/obo/IAO_0000572 documenting A documenting process to encode an information entity into a digital document http://purl.obolibrary.org/obo/OBI_0000245 organization http://purl.obolibrary.org/obo/BFO_0000040 material entity An organization is a continuant entity which can play roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. http://purl.obolibrary.org/obo/OBI_0000425 averaging objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation. http://purl.obolibrary.org/obo/OBI_0000471 study design execution http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that carries out a study design http://purl.obolibrary.org/obo/OBI_0000714 graph of vertices http://purl.obolibrary.org/obo/IAO_0000038 graph A construct that consists of many nodes connected with edges. The edges represent a relationship between the objects represented by the nodes. A graph can be equivalently represented as a matrix. http://purl.obolibrary.org/obo/OBI_0001092 computer cluster http://purl.obolibrary.org/obo/OBI_0400107 computer A group of linked computers, working together closely so that in many respects they form a single computer. http://purl.obolibrary.org/obo/OBI_0001173 service http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which a service provider performs a task (i.e. a planned process) for a service consumer. http://purl.obolibrary.org/obo/OBI_0001226 environmental history design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which some aspect of the organism's environmental history is studied, such as exposure to teratogen, radiation, climate etc. http://purl.obolibrary.org/obo/OBI_0001293 disease state design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which the pathological condition of a part, organ, or system of an organism is studied. The etiology may be from infection, genetic defect, or environmental stress. http://purl.obolibrary.org/obo/OBI_0001454 pathogenicity design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which an infective agent such as a bacterium, virus, protozoan, fungus etc. infects a host organism(s) and the infective agent is assayed. http://purl.obolibrary.org/obo/OBI_0001530 data service http://purl.obolibrary.org/obo/OBI_0001173 service A service that has some information content entity as input and output. http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that represents the number of events occuring over a time interval http://purl.obolibrary.org/obo/OBI_0001615 investigation description http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes an investigation. http://purl.obolibrary.org/obo/OBI_0001628 investigation identifier http://purl.obolibrary.org/obo/IAO_0000577 centrally registered identifier symbol A CRID symbol used to identify an investigation. http://purl.obolibrary.org/obo/OBI_0001629 grant identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier A CRID symbol used to identify a grant. http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that consists of two parts: a numeral and a unit label http://purl.obolibrary.org/obo/OBI_0001933 value specification http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies a value within a classification scheme or on a quantitative scale. http://purl.obolibrary.org/obo/OBI_0001958 systematic review study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design for identifying in the literature prior studies of a pre-determined phenomenon or set of related phenomena according \ to certain criteria, extracting findings from these studies, and summarizing these findings and/or attempting to draw new conclusions from them which were no\ t justified by any of the individual, prior studies. Many systematic reviews also assess the quality of the studies so reviewed. http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification A data transformation objective is an objective specification that a data transformation may have towards which the realization of that transformation is directed. http://purl.obolibrary.org/obo/OBI_0200170 averaging data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation An averaging data transformation is a data transformation that has objective averaging. http://purl.obolibrary.org/obo/OBI_0300311 observation design http://purl.obolibrary.org/obo/OBI_0500000 study design observation design is a study design in which subjects are monitored in the absence of any active intervention by experimentalists. http://purl.obolibrary.org/obo/OBI_0302867 calculated datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A data item that was generated on the basis of a calculation or logical reasoning http://purl.obolibrary.org/obo/OBI_0302914 digital curation http://purl.obolibrary.org/obo/IAO_0000572 documenting Digital curation is the process of establishing and developing long term repositories of digital assets for current and future reference by researchers, scientists, and historians, and scholars generally. http://purl.obolibrary.org/obo/OBI_0400107 computer http://purl.obolibrary.org/obo/OBI_0000968 device A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions. http://purl.obolibrary.org/obo/OBI_0500020 time series design http://purl.obolibrary.org/obo/OBI_0500000 study design Groups of assays that are related as part of a time series. http://purl.obolibrary.org/obo/OGMS_0000023 phenotype http://purl.obolibrary.org/obo/BFO_0000019 quality A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. http://purl.obolibrary.org/obo/OGMS_0000031 disease http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. http://purl.obolibrary.org/obo/OGMS_0000063 disease course http://purl.obolibrary.org/obo/BFO_0000015 process The totality of all processes through which a given disease instance is realized. http://purl.obolibrary.org/obo/OGMS_0000090 treatment http://purl.obolibrary.org/obo/OGMS_0000096 health care process A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate a disorder, the signs and symptoms of a disorder, or a pathological process http://purl.obolibrary.org/obo/PATO_0000047 biological sex http://purl.obolibrary.org/obo/BFO_0000019 quality An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. http://purl.obolibrary.org/obo/PATO_0000122 length http://purl.obolibrary.org/obo/PATO_0001708 1-D extent A 1-D extent quality which is equal to the distance between two points. http://purl.obolibrary.org/obo/PATO_0000125 mass http://purl.obolibrary.org/obo/PATO_0001018 physical quality A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. http://purl.obolibrary.org/obo/PATO_0000146 temperature http://purl.obolibrary.org/obo/PATO_0001018 physical quality A physical quality of the thermal energy of a system. http://purl.obolibrary.org/obo/PATO_0000383 female http://purl.obolibrary.org/obo/PATO_0000047 biological sex A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. http://purl.obolibrary.org/obo/PATO_0000384 male http://purl.obolibrary.org/obo/PATO_0000047 biological sex A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. http://purl.obolibrary.org/obo/UO_0000280 rate unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label A unit which represents a standard measurement occurrence of a process per unit time. http://purl.obolibrary.org/obo/VO_0000001 vaccine http://purl.obolibrary.org/obo/OBI_0000047 processed material A vaccine is a processed material with the function that when administered, it prevents or ameliorates a disorder in a target organism by inducing or modifying adaptive immune responses specific to the antigens in the vaccine. http://purl.obolibrary.org/obo/APOLLO_SV_00000145 resistance to infection http://purl.obolibrary.org/obo/BFO_0000016 disposition The dispostion of an organism of a particular biological taxon A that is realized by inhibiting the establishment of an infection by an organism of another particular biological taxon that bears an infectious disposition towards members of A http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the output of counting. http://purl.obolibrary.org/obo/APOLLO_SV_00000085 age data in age brackets data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set consisting of measurements of age organized in age brackets. http://purl.obolibrary.org/obo/IAO_0020015 personal name http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier referring to an individual entity that is ascribed personhood by the user of the identifier. http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter http://purl.obolibrary.org/obo/OGMS_0000096 health care process A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter http://purl.obolibrary.org/obo/OMRSE_00000023 collection of humans http://purl.obolibrary.org/obo/OMRSE_00000022 aggregate of objectual organisms An object aggregate all of whose components are human beings. http://purl.obolibrary.org/obo/OMRSE_00000033 aggregate of organizations http://purl.obolibrary.org/obo/BFO_0000040 material entity An object aggregate that is not itself an organization and whose members are only organizations that have some feature in common http://purl.obolibrary.org/obo/APOLLO_SV_00000544 pathogen evolution model http://purl.obolibrary.org/obo/APOLLO_SV_00000007 simulation software application A simulation software application that simulates the evolution over time of a particular pathogen of a particular biological taxon. http://purl.obolibrary.org/obo/APOLLO_SV_00000546 self-initiated travel avoidance behavior http://purl.obolibrary.org/obo/APOLLO_SV_00000402 individual human behavior Individual human behavior that involves either 1) remaining in some susceptible population or some exposed population or 2) human movement away from or around an infectious population, in order to avoid being participant in some infection acquisition. http://purl.obolibrary.org/obo/APOLLO_SV_00000547 social interaction data item http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is about one or more instances of social interaction between two or more individuals, and that specifies the temporal duration of interaction, spatial distance of individuals, geographical location of individuals, and the number of individuals participant in some social behavior(s). http://purl.obolibrary.org/obo/APOLLO_SV_00000548 Susceptible-Infected-Susceptible model http://purl.obolibrary.org/obo/APOLLO_SV_00000303 compartmental disease transmission model A compartmental disease transmission model that represents some infection in ecosystem in which there is only a susceptible population and an infectious population, such that individuals who aren't infectious are susceptible. http://purl.obolibrary.org/obo/APOLLO_SV_00000549 Susceptible-Infected-Resistant model http://purl.obolibrary.org/obo/APOLLO_SV_00000303 compartmental disease transmission model A compartmental disease transmission model that represents some infection in ecosystem in which there are compartments for susceptible individuals, infectious individuals, and recovered individuals, such that recovered individuals are immune to future infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000550 contact tracing http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that identifies and treats contacted organisms in a host population. http://purl.obolibrary.org/obo/APOLLO_SV_00000551 Susceptible-Exposed-Infectious-Recovered model http://purl.obolibrary.org/obo/APOLLO_SV_00000303 compartmental disease transmission model A compartmental disease transmission model that represents some infection in ecosystem in which there are compartments for susceptible individuals, exposed individuals, infectious individuals, and immune inviduals, such that exposed individuals are infected but cannot transmit the pathogen. http://purl.obolibrary.org/obo/APOLLO_SV_00000552 metapopulation disease transmission model http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model A disease transmission model that is about two or more collections of organisms of a particular biological taxon in separate geographical locations and some geographical migration of organisms between them. http://purl.obolibrary.org/obo/APOLLO_SV_00000553 two-strain Susceptible-Infectious-Resistant model http://purl.obolibrary.org/obo/APOLLO_SV_00000549 Susceptible-Infected-Resistant model A Susceptible-Infected-Resistant model that represents exactly two infections in ecosystem by exactly two pathogens. http://purl.obolibrary.org/obo/APOLLO_SV_00000555 disease transmission tree estimator http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that implements an algorithm that has specified output some transmission tree. http://purl.obolibrary.org/obo/APOLLO_SV_00000556 mechanical flight function http://purl.obolibrary.org/obo/BFO_0000034 function A function inhering in some device that is realized by some movement process in the atmosphere in which the device is participant in. http://purl.obolibrary.org/obo/APOLLO_SV_00000560 epidemic data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set about an instance of an epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000563 phylogenetic tree constructor http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that implements an algorithm that has specified output a phylogenetic tree http://purl.obolibrary.org/obo/APOLLO_SV_00000564 data visualizer http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that implements an algorithm that has some data visualizer software objective specification as part. http://purl.obolibrary.org/obo/APOLLO_SV_00000568 total fatal disease cases http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the output of some infection case count and that represents the number of infectious disease cases that ended in death. http://purl.obolibrary.org/obo/APOLLO_SV_00000570 employment status data item http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that denotes some context in which an individual realizes some employee role if he or she is a member of the labor force, or the context in which he or she is not a member of the labor force according to certain prespecified conditions. http://purl.obolibrary.org/obo/APOLLO_SV_00000571 contaminated abiotic thing http://purl.obolibrary.org/obo/APOLLO_SV_00000220 abiotic ecosystem element An abiotic ecosystem element that is participant in some biological contamination process. http://purl.obolibrary.org/obo/APOLLO_SV_00000798 copyright license http://purl.obolibrary.org/obo/IAO_0000310 document A document that is about the legal rights, claims, and obligations of a legal person (person or organization) under copyright law, and how that legal person intends for those rights, claims, and obligations to be handled/managed by users of the creative work to which this document is attached. http://purl.obolibrary.org/obo/APOLLO_SV_00000799 data service software http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that implements a data service. http://purl.obolibrary.org/obo/APOLLO_SV_00000597 data format validator http://purl.obolibrary.org/obo/IAO_0000594 software application A software application that takes a data set as input and outputs a determination of whether the dataset is in compliance with one or more given data format specifications. http://purl.obolibrary.org/obo/APOLLO_SV_00000640 cumulative vaccination count http://purl.obolibrary.org/obo/APOLLO_SV_00000626 count of vaccinations in a population A count of vaccinations in a population that is the total number of a given type of vaccines administered during a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000641 incident vaccination count http://purl.obolibrary.org/obo/APOLLO_SV_00000626 count of vaccinations in a population A count of vaccinations in a population that is the number of a given type of vaccines administered during a proper occurrent part of a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000642 cumulative infection count http://purl.obolibrary.org/obo/APOLLO_SV_00000628 count of infections in a population A count of infections in a population that is the total number of infections that occur during a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000643 incident infection count http://purl.obolibrary.org/obo/APOLLO_SV_00000628 count of infections in a population A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000644 cumulative hospitalization count http://purl.obolibrary.org/obo/APOLLO_SV_00000627 count of hospital stays in a population A count of hospital stays in a population that is the total number of hospitalizations that occur during a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000645 incident hospitalization count http://purl.obolibrary.org/obo/APOLLO_SV_00000627 count of hospital stays in a population A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000646 cumulative death count http://purl.obolibrary.org/obo/APOLLO_SV_00000625 count of deaths in a population A count of deaths in a population that is the total number of deaths that occur during a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000647 incident death count http://purl.obolibrary.org/obo/APOLLO_SV_00000625 count of deaths in a population A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000648 cumulative case count http://purl.obolibrary.org/obo/APOLLO_SV_00000497 count of disease cases A count of disease cases that is the total number of individuals who come to meet the criteria of some case definition during a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000649 incident case count http://purl.obolibrary.org/obo/APOLLO_SV_00000497 count of disease cases A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000650 intent to have a ward vaccinated http://purl.obolibrary.org/obo/MF_0000073 intentionality An intentionality inhering in a person bearing a guardian role and that is directed at their future participation in an authorization for the vaccination or other immunization of a person under their care and who bears a ward role. http://purl.obolibrary.org/obo/APOLLO_SV_00000652 intent to have a child vaccinated http://purl.obolibrary.org/obo/APOLLO_SV_00000650 intent to have a ward vaccinated An intent to have a ward vaccinated where the guardian is a parent (natural or adoptive) and the ward is a child (natural or adopted) of that parent, and the parent has not otherwise been legally barred from making healthcare decisions for the child. http://purl.obolibrary.org/obo/DOID_0060478 Zika fever http://purl.obolibrary.org/obo/APOLLO_SV_00000239 infectious disease A viral infectious disease that has_material_basis in Zika virus, which is transmitted_by Aedes aegypti mosquitoes and targets neural progenitor cells and neuronal cells in all stages of maturity and has_symptom fever, has_symptom rash, has_symptom headaches and has_symptom joint pain. http://purl.obolibrary.org/obo/DOID_12205 dengue disease http://purl.obolibrary.org/obo/APOLLO_SV_00000239 infectious disease A viral infectious disease that results_in infection, has_material_basis_in Dengue virus [NCBITaxon:12637] with four serotypes (Dengue virus 1, 2, 3 and 4), which are transmitted_by Aedes mosquito bite. The infection has_symptom fever, has_symptom severe headache, has_symptom severe pain behind the eyes, has_symptom joint pain, has_symptom muscle and bone pain, has_symptom rash, and has_symptom mild bleeding. http://purl.obolibrary.org/obo/DOID_12206 dengue hemorrhagic fever http://purl.obolibrary.org/obo/DOID_12205 dengue disease A dengue disease that occurs when a person experiences a second infection with a heterologous Dengue virus serotype, which is transmitted_by Aedes mosquito bite. The infection has_symptom hemorrhagic lesions of the skin, has_symptom thrombocytopenia, has_symptom reduction in the fluid part of the blood, and has_symptom high fever. http://purl.obolibrary.org/obo/DOID_8469 influenza http://purl.obolibrary.org/obo/APOLLO_SV_00000239 infectious disease A viral infectious disease that results_in infection, located_in respiratory tract, has_material_basis_in Influenzavirus A, has_material_basis_in Influenzavirus B, or has_material_basis_in Influenzavirus C, which are transmitted_by droplet spread of oronasal secretions during coughing, sneezing, or talking from an infected person. It is a highly contagious disease that affects birds and mammals and has_symptom chills, has_symptom fever, has_symptom sore throat, has_symptom runny nose, has_symptom muscle pains, has_symptom severe headache, has_symptom cough, and has_symptom weakness. http://purl.obolibrary.org/obo/UBERON_0000467 anatomical system http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function. http://purl.obolibrary.org/obo/UBERON_0002405 immune system http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies. http://purl.obolibrary.org/obo/GO_0019098 reproductive behavior http://purl.obolibrary.org/obo/GO_0007610 behavior The specific behavior of an organism that is associated with reproduction. http://purl.obolibrary.org/obo/GO_0048609 multicellular organismal reproductive process http://purl.obolibrary.org/obo/GO_0022414 reproductive process The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. http://purl.obolibrary.org/obo/GO_0051234 establishment of localization http://purl.obolibrary.org/obo/GO_0008150 biological process Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation. http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome. http://purl.obolibrary.org/obo/UBERON_0000071 death stage http://purl.obolibrary.org/obo/UBERON_0000105 life cycle stage End of the life of an organism. http://purl.obolibrary.org/obo/UBERON_0000105 life cycle stage http://purl.obolibrary.org/obo/BFO_0000015 process A spatiotemporal region encompassing some part of the life cycle of an organism. http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity Anatomical entity that has mass. http://purl.obolibrary.org/obo/UBERON_0000479 tissue http://purl.obolibrary.org/obo/UBERON_0010000 multicellular anatomical structure Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation. http://purl.obolibrary.org/obo/UBERON_0000480 anatomical group http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. http://purl.obolibrary.org/obo/UBERON_0010000 multicellular anatomical structure http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure An anatomical structure that has more than one cell as a part. http://purl.obolibrary.org/obo/DRON_00000005 clinical drug product http://purl.obolibrary.org/obo/DRON_00000074 drug product A drug product that is bearer of a clinical drug role. http://purl.obolibrary.org/obo/OAE_0000055 contraindication http://purl.obolibrary.org/obo/BFO_0000016 disposition A contraindication is a disposition that increases the risk of harm involved in using a particular drug, carrying out a medical procedure, or engaging in a particular activity such that the risk of harm exceeds a threshold. An contraindication serves as a reason to withhold a certain medical treatment. http://purl.obolibrary.org/obo/OGMS_0000060 bodily process http://purl.obolibrary.org/obo/BFO_0000015 process A process in which at least one bodily component of an organsim participates. http://purl.obolibrary.org/obo/UO_0000190 ratio http://purl.obolibrary.org/obo/UO_0000186 dimensionless unit A dimensionless unit which denotes an amount or magnitude of one quantity relative to another. http://purl.obolibrary.org/obo/APOLLO_SV_00000016 infectious period duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration of the parts of an infection during which the host bears an infectious disposition in a population of hosts. http://purl.obolibrary.org/obo/APOLLO_SV_00000017 latent period duration http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration of the time interval between the host acquiring an infection and the host bearing a contagiousness disposition during the same disease course within a population of hosts. http://purl.obolibrary.org/obo/APOLLO_SV_00000031 simulated population http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation A simulation of a population or populations of organisms of a particular biological taxon that simulates a particular type of event or types of event that occur in a specified time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000033 counting http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process The planned process of finding the number of elements in a finite set of objects. http://purl.obolibrary.org/obo/APOLLO_SV_00000098 count of contagious population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count The count of individuals in a contagious population (empirical or virtual). http://purl.obolibrary.org/obo/APOLLO_SV_00000099 count of resistant population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count The count of individuals in a resistant population (empirical or virtual). http://purl.obolibrary.org/obo/APOLLO_SV_00000152 population survey http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving counting numbers of a organism population, possibly including counting sub-populations fulfilling specific criteria, and that realizes some concretization of a census objective specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000153 population census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census that is the outcome of a population survey. http://purl.obolibrary.org/obo/APOLLO_SV_00000191 transmission coefficient http://purl.obolibrary.org/obo/OBI_0001554 rate measurement datum An information content entity that represents the rate that an infection moves from infected individuals to susceptible individuals in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that immediately targets individuals. http://purl.obolibrary.org/obo/APOLLO_SV_00000211 transmission probability http://purl.obolibrary.org/obo/APOLLO_SV_00000470 probability The probability of the occurence of an infection acquisition from one infected organism to another when in contact. http://purl.obolibrary.org/obo/APOLLO_SV_00000233 infected population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population A population of only infected members of one species. http://purl.obolibrary.org/obo/APOLLO_SV_00000234 susceptible population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population A population of organisms that are all susceptible. http://purl.obolibrary.org/obo/APOLLO_SV_00000235 immune population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population A population of organisms that are all immune. http://purl.obolibrary.org/obo/APOLLO_SV_00000240 census reference date http://purl.obolibrary.org/obo/IAO_0000030 information content entity A information content entity that specifies the date of a census. http://purl.obolibrary.org/obo/APOLLO_SV_00000258 delay from symptoms to treatment http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration between the appearance of symptoms of a disease and the start of a treatment. http://purl.obolibrary.org/obo/APOLLO_SV_00000267 time delay to case detection http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration from the time an organism satisfies a case definition until a process or system detects the organism as satisfying that case definition http://purl.obolibrary.org/obo/APOLLO_SV_00000280 duration of treatment course http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration A duration that measures the temporal interval occupied by a treatment course. http://purl.obolibrary.org/obo/APOLLO_SV_00000281 number of doses in a treatment course http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count The count of the number of doses that are part of a treatment course. http://purl.obolibrary.org/obo/APOLLO_SV_00000291 time delay of treatment detection http://purl.obolibrary.org/obo/APOLLO_SV_00000243 duration The duration from the time an individual receives a treatment until the time a system designed to detect that the treatment occurred detects it in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000296 case definition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies the criteria that an organism must meet to be considered to be in some abnormal state. http://purl.obolibrary.org/obo/APOLLO_SV_00000498 count of cases in an epidemic http://purl.obolibrary.org/obo/APOLLO_SV_00000497 count of disease cases A count of disease cases in an infected population that meet the case definition criteria within a particular epidemic interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000511 infection acquisition through sexual activity with infectious host http://purl.obolibrary.org/obo/APOLLO_SV_00000265 infection acquisition from infectious host An infection acquistion from infectious host that is causally downstream of some potentially infectious sexual contacting http://purl.obolibrary.org/obo/GEO_000000004 subnational entity http://purl.obolibrary.org/obo/GEO_000000400 governmental organization a governmental organization that has a local, regional, or territorial government that recognizes a sovereign state as its higher political authority http://purl.obolibrary.org/obo/GEO_000000005 major administrative subdivision http://purl.obolibrary.org/obo/GEO_000000004 subnational entity A subnational entity that is the primary organizational member of a nation, is subject to the full set of laws of the nation, enjoys all the privileges established under the laws of the nation, is not a member of any other geopolitical entity, and itself governs a part of the geographical region governed by the nation. http://purl.obolibrary.org/obo/GEO_000000006 geopolitical dependency http://purl.obolibrary.org/obo/GEO_000000004 subnational entity A subnational entity that does not possess full political independence or sovereignty as a sovereign state, but remains politically outside of the controlling state and controls a geographical region that is outside the controlling state's integral region. http://purl.obolibrary.org/obo/GEO_000000370 geographical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is (1) a bona fide or fiat object part of the crust, any bodies of liquid on or contained within the crust, or planetary boundary layer (if present) of a terrestrial planet (including Earth), dwarf planet, exoplanet, natural satellite, planetesimal, or small Solar System body, and that (2) overlaps the planetary surface (including having a boundary that coincides with part of the planetary surface). http://purl.obolibrary.org/obo/GEO_000000372 geographical region http://purl.obolibrary.org/obo/GEO_000000370 geographical entity A geographical entity that is demarcated at least in part by one or more closed fiat boundaries all of whose lines are part of the planetary surface. http://purl.obolibrary.org/obo/GEO_000000393 nongovernmental organization http://purl.obolibrary.org/obo/GEO_000000391 geopoli organization a geopolitical organization that is voluntary and private, whose members are individual persons or organizations that come together to acheive a common purpose. http://purl.obolibrary.org/obo/GEO_000000395 intergovernmental organization http://purl.obolibrary.org/obo/GEO_000000391 geopoli organization an intergovernmental organization that has at least three member states, that has activies in at least three states, and that is unified by some formal intergovernmental agreement http://purl.obolibrary.org/obo/GEO_000000400 governmental organization http://purl.obolibrary.org/obo/OBI_0000245 organization An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization". http://purl.obolibrary.org/obo/GEO_000000788 geodetic datum http://purl.obolibrary.org/obo/IAO_0000030 information content entity A coordinate system, and a set of reference points, used to locate places on the Earth (or similar objects). http://purl.obolibrary.org/obo/IDO_0000509 organism population http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate An aggregate of organisms of the same Species. http://purl.obolibrary.org/obo/IDO_0000531 host http://purl.obolibrary.org/obo/OBI_0100026 organism An organism bearing a host role. http://purl.obolibrary.org/obo/IDO_0000629 host role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by an organism in virtue of the fact that it's extended organism contains a material entity other than the organism. http://purl.obolibrary.org/obo/OGMS_0000087 extended organism http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism. http://purl.obolibrary.org/obo/STATO_0000258 variable http://purl.obolibrary.org/obo/IAO_0000027 data item A variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation. http://purl.obolibrary.org/obo/TRANS_0000000 transmission process http://purl.obolibrary.org/obo/BFO_0000015 process A process that is the means during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host. http://purl.obolibrary.org/obo/UO_0000191 fraction http://purl.obolibrary.org/obo/UO_0000190 ratio A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator). http://purl.obolibrary.org/obo/GEO_000000001 geopolitical entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii) http://purl.obolibrary.org/obo/GEO_000000002 obsolete group of governmental organizations http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An aggregate of geopoliticial entities. Examples include the group of states of the United States, the nations of North America, and so on. http://purl.obolibrary.org/obo/GEO_000000003 nation http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A geopolitical entity that is self contained and recognizes no higher political authority than itself. http://purl.obolibrary.org/obo/GEO_000000007 group of major administrative subdivisions http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations An aggregate of governmental organizations that is not itself a major administrative subdivision and whose members are only major administrative subdivisions that have some feature in common. http://purl.obolibrary.org/obo/GEO_000000008 group of dependencies http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations An aggregate of governmental organizations that is not itself a geopolitical dependency and whose members are only geopolitical dependencies that have some feature in common. http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An aggregate of organizations that is not itself a governmental organization, has only governmental organizations as members, and has at least two governmental organizations as members. http://purl.obolibrary.org/obo/GEO_000000357 contiguous island land mass http://purl.obolibrary.org/obo/GEO_000000334 subcontinental land mass A subcontinental land mass that is part of an island and includes part of the land surface of the island. http://purl.obolibrary.org/obo/GEO_000000371 geographical feature http://purl.obolibrary.org/obo/GEO_000000370 geographical entity A geographical entity that has at least one bona fide boundary. http://purl.obolibrary.org/obo/GEO_000000377 aggregate of geographical entities http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate An object aggregate of geographical entities http://purl.obolibrary.org/obo/GEO_000000401 aggregate of geopolitical organizations http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An object aggregate that is not itself a geopolitical organization and whose members are only geopolitical organizations that have some feature in common http://purl.obolibrary.org/obo/GEO_000000402 obsolete aggregate of dependencies http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations An aggregate of governmental organizations that is not itself a geopolitical dependency and whose members are only geopolitical dependencies that have some feature in common. http://purl.obolibrary.org/obo/GEO_000000403 obsolete aggregate of major administrative subdivisions http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations An aggregate of governmental organizations that is not itself a major administrative subdivision and whose members are only major administrative subdivisions that have some feature in common http://purl.obolibrary.org/obo/GEO_000000404 aggregate of sovereign states http://purl.obolibrary.org/obo/GEO_000000337 aggregate of governmental organizations An aggregate of governmental organizations that is not itself a sovereign state and whose members are only sovereign states that have some feature in common http://purl.obolibrary.org/obo/GEO_000000787 geodetic coordinate measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement of location on the Earth that uses a single number to specify a coordinate in a coordinate system known as a geodetic datum. http://purl.obolibrary.org/obo/UO_0000047 area unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label A unit which is a standard measure of the amount of a 2-dimensional flat surface. http://purl.obolibrary.org/obo/STATO_0000085 effect size estimate http://purl.obolibrary.org/obo/IAO_0000109 measurement datum effect size estimate is a data item about the direction and strength of the consequences of a causative agent as explored by statistical methods. Those methods produce estimates of the effect size, e.g. confidence interval http://purl.obolibrary.org/obo/STATO_0000088 study group population size http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count statistical sample size is a count evaluating the number of individual experimental units http://purl.obolibrary.org/obo/STATO_0000321 non-parametric distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000247 unconditional probability distribution Probability distribution estimated empirically on the data without assumptions on the shape of the probability distribution. http://purl.obolibrary.org/obo/STATO_0000398 weighted arithmetic mean http://purl.obolibrary.org/obo/OBI_0000679 average value The weighted arithmetic mean is a measure of central tendency that is the sum of the products of each observed value and their respective non-negative weights, divided by the sum of the weights, such that the contribution of each observed value to the mean may defer according to its respective weight. It is defined by the formula: A = sum(vi*wi)/sum(wi), where 'i' ranges from 1 to n, 'vi' is the value of each observation, and 'wi' is the value of the respective weight for each observed value. The weighted arithmetic mean is a kind of mean similar to an ordinary arithmetic mean (the most common type of average), except that instead of each of the data points contributing equally to the final average, some data points are weighted, meaning they contribute more than others. The weighted arithmetic mean is often used if one wants to combine average values from samples of the same population with different sample sizes. http://purl.obolibrary.org/obo/APOLLO_SV_00000569 total disease cases http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count A count of the total number of diseased indivduals in a population during a particular time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000588 data visualization objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that is realized when a diagram is drawn from one or more data sets. http://purl.obolibrary.org/obo/PCO_0000001 population http://purl.obolibrary.org/obo/PCO_0000018 collection of organisms of the same species A collection of organisms, all of the same species, that live in the same place. http://purl.obolibrary.org/obo/PCO_0000018 collection of organisms of the same species http://purl.obolibrary.org/obo/PCO_0000000 PCO:collection of organisms A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. http://purl.obolibrary.org/obo/IAO_0020001 grapheme http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is a fundamental unit in a written language. http://purl.obolibrary.org/obo/IAO_0021003 social act http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A planned process that is carried out by a conscious being or an organization, and is self-generated, directed towards another conscious being or an aggregate of conscious beings, an organization or an aggregate of organizations, and that is in need of being perceived. http://purl.obolibrary.org/obo/OMRSE_00000001 human social role http://purl.obolibrary.org/obo/OMRSE_00000026 organism social role A social role inhering in a human being. http://purl.obolibrary.org/obo/OMRSE_00000010 health care role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. http://purl.obolibrary.org/obo/OMRSE_00000015 health care provider organization role http://purl.obolibrary.org/obo/OMRSE_00000027 organization health care role A role that inheres in an organization and that is realized by the providing of services in a health care encounter. http://purl.obolibrary.org/obo/OMRSE_00000022 aggregate of objectual organisms http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate An object aggregate of objectual organisms. http://purl.obolibrary.org/obo/OMRSE_00000025 organization social role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes A role in human social processes that inheres in an organization. http://purl.obolibrary.org/obo/OMRSE_00000026 organism social role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes A role in human social processes that inheres in an organism. http://purl.obolibrary.org/obo/OMRSE_00000027 organization health care role http://purl.obolibrary.org/obo/OMRSE_00000025 organization social role An organization social role that, if realized, is realized by either a health care process or an ancillary health care process http://purl.obolibrary.org/obo/OMRSE_00000030 human patient role http://purl.obolibrary.org/obo/OMRSE_00000011 patient role A patient role that inheres in a human being. http://purl.obolibrary.org/obo/OMRSE_00000053 school function http://purl.obolibrary.org/obo/BFO_0000034 function A function inhering in a material entity that, if realized, is realized by that material entity being the site at which formal education is provided to a student population. http://purl.obolibrary.org/obo/OMRSE_00000054 hospital role http://purl.obolibrary.org/obo/OMRSE_00000015 health care provider organization role A healthcare provider role that inheres in an organization and is realized by providing inpatient care. http://purl.obolibrary.org/obo/OMRSE_00000056 hospital organization http://purl.obolibrary.org/obo/OBI_0000245 organization An organization that is the bearer of a hospital role. http://purl.obolibrary.org/obo/OMRSE_00000057 school organization http://purl.obolibrary.org/obo/OBI_0000245 organization An organization that is the bearer of a school role. http://purl.obolibrary.org/obo/OMRSE_00000061 architectural structure http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is a human made strcuture with firm connection between its foundation and the ground. http://purl.obolibrary.org/obo/OMRSE_00000062 facility http://purl.obolibrary.org/obo/OMRSE_00000061 architectural structure An architectural structure that bears some function. http://purl.obolibrary.org/obo/OMRSE_00000064 school facility http://purl.obolibrary.org/obo/OMRSE_00000062 facility A facility that is run by a school organization and is the bearer of a school function. http://purl.obolibrary.org/obo/COB_0000022 organism http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity A material entity that is a maximal functionally integrated unit that develops from a program encoded in a genome http://purl.obolibrary.org/obo/OGMS_0000018 laboratory finding http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient. http://purl.obolibrary.org/obo/OGMS_0000027 clinical phenotype http://purl.obolibrary.org/obo/OGMS_0000023 phenotype A clinically abnormal phenotype. http://purl.obolibrary.org/obo/OGMS_0000092 life course http://purl.obolibrary.org/obo/BFO_0000015 process A process which has as parts all the processes in which a given organism is participant. http://purl.obolibrary.org/obo/OGMS_0000096 health care process http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient http://purl.obolibrary.org/obo/OGMS_0000098 hospitalization http://purl.obolibrary.org/obo/OGMS_0000096 health care process TODO http://purl.obolibrary.org/obo/OGMS_0000099 outpatient encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter TODO http://purl.obolibrary.org/obo/OGMS_0000100 inpatient encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter A health care encounter involving a patient who has been admitted to a health care facility and remains in a hospital facility for at least one night. http://purl.obolibrary.org/obo/OGMS_0000101 emergency department encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter A health care encounter in which care is provided for undifferentiated and unscheduled patients with illnesses or injuries requiring immediate medical attention. http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes http://purl.obolibrary.org/obo/BFO_0000023 role A role that inheres in some entity that is realized in a social act. http://purl.obolibrary.org/obo/APOLLO_SV_00000579 infectious disease forecast http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that realizes some infectious disease forecasting software. http://purl.obolibrary.org/obo/APOLLO_SV_00000591 climate data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is an aggregate of data items that are about an environmental system process (e.g., hydrological precipitation) or a participant in an environmental system process. http://purl.obolibrary.org/obo/APOLLO_SV_00000578 aggregate of disease courses http://purl.obolibrary.org/obo/BFO_0000015 process A process that (1) has as occurrent parts at least two disease courses that realize the same type of disease, and (2) has as participants two or more hosts that are members of a particular host population. http://purl.obolibrary.org/obo/APOLLO_SV_00000611 parameter estimation model http://purl.obolibrary.org/obo/IAO_0000064 algorithm An algoirthm that is used to estimate the "true" values of certain parameters of disease transmission and/or forecasting. http://purl.obolibrary.org/obo/APOLLO_SV_00000612 network model http://purl.obolibrary.org/obo/IAO_0000064 algorithm An algorithm that operates on a representation of some portion of reality and that representation has a structure with nodes that stand for certain entities and edges that state some direct or indirect relationship between pairs of entities. http://purl.obolibrary.org/obo/APOLLO_SV_00000613 laboratory testing capacity http://purl.obolibrary.org/obo/IAO_0000007 action specification An action specification giving the number of laboratory tests of a certain type that it is possible to perform in a given population during a specific time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000614 weather data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set about the Earth's atmospheric weather http://purl.obolibrary.org/obo/APOLLO_SV_00000615 human monkeypox http://purl.obolibrary.org/obo/DOID_3292 monkeypox A monkeypox disease inhering in a human being. http://purl.obolibrary.org/obo/GO_0003674 gene product or complex activity http://purl.obolibrary.org/obo/BFO_0000015 process A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. http://purl.obolibrary.org/obo/GO_0006955 immune response http://purl.obolibrary.org/obo/GO_0008150 biological process Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. http://purl.obolibrary.org/obo/GO_0007610 behavior http://purl.obolibrary.org/obo/GO_0032501 multicellular organismal process The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity. http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/BFO_0000015 process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. http://purl.obolibrary.org/obo/GO_0016301 kinase activity http://purl.obolibrary.org/obo/GO_0003674 gene product or complex activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. http://purl.obolibrary.org/obo/GO_0019953 sexual reproduction http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction A type of reproduction that combines the genetic material of two gametes (such as a sperm or egg cell or fungal spores). The gametes have an haploid genome (with a single set of chromosomes, the product of a meiotic division) and combines with one another to produce a zygote (diploid). http://purl.obolibrary.org/obo/GO_0019954 asexual reproduction http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction A type of reproduction in which new individuals are produced from a single organism, either from an unfertilized egg or from a single cell or group of cells. http://purl.obolibrary.org/obo/GO_0022414 reproductive process http://purl.obolibrary.org/obo/GO_0008150 biological process A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. http://purl.obolibrary.org/obo/GO_0032501 multicellular organismal process http://purl.obolibrary.org/obo/GO_0008150 biological process Any biological process, occurring at the level of a multicellular organism, pertinent to its function. http://purl.obolibrary.org/obo/GO_0019058 viral life cycle http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome. http://purl.obolibrary.org/obo/GO_0044409 symbiont entry into host http://purl.obolibrary.org/obo/GO_0051704 multi-organism process Entry of a symbiont into the body, tissues, or cells of a host organism as part of the symbiont life cycle. The host is defined as the larger of the organisms involved in a symbiotic interaction. http://purl.obolibrary.org/obo/GO_0051701 biological process involved in interaction with host http://purl.obolibrary.org/obo/GO_0044403 biological process involved in symbiotic interaction An interaction between two organisms living together in more or less intimate association. The term host is used for the larger (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. http://purl.obolibrary.org/obo/GO_0051704 multi-organism process http://purl.obolibrary.org/obo/GO_0008150 biological process A biological process which involves another organism of the same or different species. http://purl.obolibrary.org/obo/ENVO_01000266 water vapour http://purl.obolibrary.org/obo/ENVO_01000797 gaseous environmental material Water vapour is a vapour which is the gas phase of water. http://purl.obolibrary.org/obo/ENVO_01000268 atmospheric water vapour http://purl.obolibrary.org/obo/ENVO_01000266 water vapour Atmospheric water vapour is water vapour that is part of an atmosphere. http://purl.obolibrary.org/obo/ENVO_01000703 hydrological precipitation process http://purl.obolibrary.org/obo/ENVO_02500000 environmental system process Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity. http://purl.obolibrary.org/obo/ENVO_01000797 gaseous environmental material http://purl.obolibrary.org/obo/ENVO_00010483 environmental material A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely. http://purl.obolibrary.org/obo/ENVO_09200000 temperature of environmental material http://purl.obolibrary.org/obo/PATO_0000146 temperature The temperature of a environmental material. http://purl.obolibrary.org/obo/ENVO_09200001 temperature of air http://purl.obolibrary.org/obo/ENVO_09200000 temperature of environmental material The temperature of a air. http://purl.obolibrary.org/obo/UO_0000186 dimensionless unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label A unit which is a standard measure of physical quantity consisting of only a numerical number without any units. http://purl.obolibrary.org/obo/UO_0000187 percent http://purl.obolibrary.org/obo/UO_0000190 ratio A dimensionless ratio unit which denotes numbers as fractions of 100. http://purl.obolibrary.org/obo/APOLLO_SV_00000622 cumulative epidemic case count http://purl.obolibrary.org/obo/APOLLO_SV_00000498 count of cases in an epidemic A count of cases in an epidemic that is about the entire temporal interval occupied by the epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000623 incident epidemic case count http://purl.obolibrary.org/obo/APOLLO_SV_00000498 count of cases in an epidemic A count of cases in an epidemic that is about a proper part of the temporal interval occupied by the epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000624 count of events occurring in a population http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count of processes in which a population and/or its members participate during a given temporal region. http://purl.obolibrary.org/obo/APOLLO_SV_00000629 cumulative epidemic infection count http://purl.obolibrary.org/obo/APOLLO_SV_00000642 cumulative infection count A cumulative infection count where the infections are an occurrent part of the same epidemic, and the reference interval is the interval occupied by the entire epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000630 incident epidemic infection count http://purl.obolibrary.org/obo/APOLLO_SV_00000643 incident infection count An incident infection count where the infections are an occurrent part of the same epidemic, and the temporal interval over which the count is made is a proper part of the reference interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000631 cumulative epidemic death count http://purl.obolibrary.org/obo/APOLLO_SV_00000646 cumulative death count A cumulative death count where the deaths are an occurrent part of the same epidemic, the deaths are attributed to the epidemic disease, and the reference interval is the interval occupied by the entire epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000632 incident epidemic death count http://purl.obolibrary.org/obo/APOLLO_SV_00000647 incident death count An incident death count where the deaths are an occurrent part of the same epidemic, the deaths are attributed to the epidemic disease, and the temporal interval over which the count is made is a proper part of the reference interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000633 cumulative epidemic hospitalization count http://purl.obolibrary.org/obo/APOLLO_SV_00000644 cumulative hospitalization count A cumulative hospitalization count where the hospitalizations are an occurrent part of the same epidemic, the hospitalizations are attributed to the epidemic disease, and the reference interval is the interval occupied by the entire epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000634 incident epidemic hospitalization count http://purl.obolibrary.org/obo/APOLLO_SV_00000645 incident hospitalization count An incident hospitalization count where the hospitalizations are an occurrent part of the same epidemic, the hospitalizations are attributed to the epidemic disease, and the temporal interval over which the count is made is a proper part of the reference interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000635 cumulative epidemic vaccination count http://purl.obolibrary.org/obo/APOLLO_SV_00000640 cumulative vaccination count A cumulative vaccination count where the vaccinations are an occurrent part of the same epidemic, the vaccinations are against the type of pathogen causing the epidemic, and the reference interval is the temporal interval occupied by the entire epidemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000636 incident epidemic vaccination count http://purl.obolibrary.org/obo/APOLLO_SV_00000641 incident vaccination count An incident vaccination count where the vaccinations are an occurrent part of the same epidemic, the vaccinations are against the type of pathogen causing the epidemic, and the temporal region over which the count is made is a proper part of the reference interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000637 intent to be vaccinated http://purl.obolibrary.org/obo/MF_0000073 intentionality An intentionality directed at future participation in a vaccination as the recipient of a vaccine or other immunization. http://purl.obolibrary.org/obo/APOLLO_SV_00000638 intent to vaccinate http://purl.obolibrary.org/obo/MF_0000073 intentionality An intentionality directed at future participation in a vaccination as the administrator of a vaccine or other immunization to an organism with an immune system. http://purl.obolibrary.org/obo/APOLLO_SV_00000639 vaccination with nirsevimab http://purl.obolibrary.org/obo/APOLLO_SV_00000142 vaccination A vaccination against respiratory syncytial virus via the administration of the monoclonal antibody nirsevimab. http://purl.obolibrary.org/obo/GO_0016032 viral process http://purl.obolibrary.org/obo/GO_0008150 biological process A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle. http://purl.obolibrary.org/obo/GO_0044403 biological process involved in symbiotic interaction http://purl.obolibrary.org/obo/GO_0044419 biological process involved in interspecies interaction between organisms A process carried out by gene products in an organism that enable the organism to engage in a symbiotic relationship, a more or less intimate association, with another organism. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts. http://purl.obolibrary.org/obo/GO_0044419 biological process involved in interspecies interaction between organisms http://purl.obolibrary.org/obo/GO_0008150 biological process Any process evolved to enable an interaction with an organism of a different species. http://purl.obolibrary.org/obo/APOLLO_SV_00000651 reproduction http://purl.obolibrary.org/obo/GO_0008150 biological process The process by which new organisms are created from existing ones. http://purl.obolibrary.org/obo/IDO_0000407 primary infectious disposition http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition An infectious disposition to become part of a disorder in organisms that have intact defenses. http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition http://purl.obolibrary.org/obo/IDO_0000450 pathogenic disposition A pathogenic disposition that inheres in an organism and is a disposition for that organism (1) to be transmitted to a host, (2) to establish itself in the host, (3) to initiate processes that result in a disorder in the host, and (4) to become part of that disorder. http://purl.obolibrary.org/obo/IDO_0000453 zoonotic disposition http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition An infectious disposition that is the disposition to be transmitted from an infected, non-human host to a human host. http://purl.obolibrary.org/obo/IDO_0000454 reverse zoonotic disposition http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition An infectious disposition that is the disposition to be transmitted from an infected, human host to a non-human host. http://purl.obolibrary.org/obo/IDO_0000457 immunocompetent organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism that has immunocompetence. http://purl.obolibrary.org/obo/IDO_0000463 infectious agent transmissibility http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an infectious agent and is the likelihood that the infectious agent will undergo a horizontal transmission process. http://purl.obolibrary.org/obo/IDO_0000464 infectivity http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an infectious agent and is the liklihood that the infectious disposition will be realized upon exposure of a susceptible organism. http://purl.obolibrary.org/obo/IDO_0000466 virulence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an infectious agent and is the degree to which realizations of the infectious disease caused by the infectious agent become severe or fatal. http://purl.obolibrary.org/obo/IDO_0000467 susceptibility http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an entity and is the degree to which it can be harmed by another entity. http://purl.obolibrary.org/obo/IDO_0000479 infectious disease incidence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of realizations of an infectious disease for which the infectious disease course begins during a specified period of time. http://purl.obolibrary.org/obo/IDO_0000480 infection incidence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of organisms in the population that become infected with an infectious agent during a specified period of time. http://purl.obolibrary.org/obo/IDO_0000483 infectious disease incidence rate http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the infectious disease incidence proportion per unit time. http://purl.obolibrary.org/obo/IDO_0000484 infection incidence rate http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the infection incidence proportion per unit time. http://purl.obolibrary.org/obo/IDO_0000485 infectious disease prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of realizations of an infectious disease in the population at a specified time. http://purl.obolibrary.org/obo/IDO_0000486 infection prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of organisms in the population infected with an infectious agent at a specified time. http://purl.obolibrary.org/obo/IDO_0000487 infectious disease lifetime prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of organisms in the population who have, at any point during their lives, been bearers of an infectious disease and experienced realization of the disease. http://purl.obolibrary.org/obo/IDO_0000488 infectious agent seroprevalence http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the number of organisms in the population that have antibody specific for an infectious agent in their serum at a specified time. http://purl.obolibrary.org/obo/IDO_0000489 infectious disease mortality rate http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population and is the per capita number of deaths in the population resulting from an infectious disease over a specified period of time. http://purl.obolibrary.org/obo/IDO_0000490 infectious disease endemicity http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population in virtue of the fact that infections of the type that causes an infectious disease are maintained in the population via intra-population transmission or by transmission from a local reservoir. http://purl.obolibrary.org/obo/IDO_0000494 infectious disease sporadicity http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in an organism population by virtue of the fact that realizations of an infectious disease occur in the population with a fluctuating prevalence. http://purl.obolibrary.org/obo/IDO_0000528 pathogen http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity with a pathogenic disposition. http://purl.obolibrary.org/obo/IDO_0000596 infectious agent http://purl.obolibrary.org/obo/IDO_0000528 pathogen An organism that has an infectious disposition. http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression http://purl.obolibrary.org/obo/BFO_0000015 process A process that attenuates an immune response. http://purl.obolibrary.org/obo/IDO_0000618 immunocompetence http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition that is the ability to mount a normal immune response. http://purl.obolibrary.org/obo/IDO_0000623 communicability http://purl.obolibrary.org/obo/IDO_0000452 infectious disposition An infectious disposition to be transmitted directly from one organism to another of the same Species by horizontal transmission. http://purl.obolibrary.org/obo/IDO_0000625 establishment of localization in host http://purl.obolibrary.org/obo/GO_0051234 establishment of localization An establishment of localization process in which a material entity reaches a site in an organism in which it can survive, grow, multiply, or mature. http://purl.obolibrary.org/obo/IDO_0000626 appearance of disorder http://purl.obolibrary.org/obo/BFO_0000015 process A process by which a disorder comes into existence. http://purl.obolibrary.org/obo/IDO_0000656 horizontal pathogen transmission process http://purl.obolibrary.org/obo/TRANS_0000000 transmission process A pathogen transmission process in which a pathogen is transmitted from one host to another of the same Species, and the two hosts are not in a parent-child relationship. http://purl.obolibrary.org/obo/OGMS_0000045 disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000589 treatment in the ICU control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000194 individual treatment control strategy An individual treatment control strategy that is realized by one or more intensive care unit encounters for infected individuals in the population http://purl.obolibrary.org/obo/ENVO_01000203 environmental condition http://purl.obolibrary.org/obo/PATO_0001018 physical quality An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system. http://purl.obolibrary.org/obo/ENVO_01000753 air temperature http://purl.obolibrary.org/obo/ENVO_09200001 temperature of air A temperature that inheres in some portion of air. http://www.ebi.ac.uk/efo/EFO_0004600 genomic data http://purl.obolibrary.org/obo/IAO_0000100 data set Genomic data is data about the genomes of an organism. http://purl.obolibrary.org/obo/IAO_0021009 deontic declaration http://purl.obolibrary.org/obo/IAO_0021003 social act A social act that creates or revokes a deontic role. http://purl.obolibrary.org/obo/IAO_0000444 publishing process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free. http://purl.obolibrary.org/obo/IAO_0000445 document in preparation for publication http://purl.obolibrary.org/obo/IAO_0000310 document A document that is in preparation for submission to be published. http://purl.obolibrary.org/obo/IAO_0000701 descriptive data section http://purl.obolibrary.org/obo/IAO_0000314 document part A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made. http://purl.obolibrary.org/obo/IAO_0000702 additional results section http://purl.obolibrary.org/obo/IAO_0000318 results section A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.) http://purl.obolibrary.org/obo/IAO_0000703 research participants section http://purl.obolibrary.org/obo/IAO_0000314 document part A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.). http://purl.obolibrary.org/obo/IAO_0000704 measurement methods section http://purl.obolibrary.org/obo/IAO_0000317 methods section A methods section that describes details of data assessment methods (data measurement). http://purl.obolibrary.org/obo/IAO_0000705 research settings section http://purl.obolibrary.org/obo/IAO_0000314 document part A document part that describes the physical/social/cultural conditions around a research trial. http://purl.obolibrary.org/obo/IAO_0000706 study bias section http://purl.obolibrary.org/obo/IAO_0000631 study limitations section A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others. http://purl.obolibrary.org/obo/APOLLO_SV_00000598 disease identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes a disease. http://purl.obolibrary.org/obo/APOLLO_SV_00000599 infection acquisition dataset http://purl.obolibrary.org/obo/IAO_0000100 data set A dataset that is about infectious disease acquisitions at particular times and particular places. http://purl.obolibrary.org/obo/APOLLO_SV_00000601 human daily movement http://purl.obolibrary.org/obo/APOLLO_SV_00000402 individual human behavior An individual human behavior that is the movements from one location to another throughout the day (e.g., work, home, stores, church, relatives' homes) in the areas adjacent to where the human lives at the time. http://purl.obolibrary.org/obo/APOLLO_SV_00000602 human daily movement data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is about the human daily movement behavior of the individual huamns in a given population. http://purl.obolibrary.org/obo/APOLLO_SV_00000604 control strategy census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem. http://purl.obolibrary.org/obo/APOLLO_SV_00000605 school closure control strategy census http://purl.obolibrary.org/obo/APOLLO_SV_00000604 control strategy census An infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count of simulated or physical individuals in a population. http://purl.obolibrary.org/obo/IAO_0000605 abbreviation textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity listing abbreviations and their expansions that are used in a document. http://purl.obolibrary.org/obo/IAO_0000608 author information textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document. http://purl.obolibrary.org/obo/IAO_0000610 author summary textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines). http://purl.obolibrary.org/obo/IAO_0000612 availability textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained. http://purl.obolibrary.org/obo/IAO_0000614 case report textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses a detailed account of a portion of the medical history for a specific patient. http://purl.obolibrary.org/obo/IAO_0000617 conflict of interest textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses a situation involving one or more of the authors, or the funding source of a document whereby the authors or funding source stand to potentially gain (typically financially) from the results reported in the document. http://purl.obolibrary.org/obo/IAO_0000619 consent textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that documents the consenting process used to enroll patients in a study. http://purl.obolibrary.org/obo/IAO_0000621 ethical approval textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that documents the ethical approval of some study design. http://purl.obolibrary.org/obo/IAO_0000624 funding source declaration textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity documenting the source of funding that supported some study. http://purl.obolibrary.org/obo/IAO_0000626 future directions textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity expressing ideas regarding future work relevant to work described in a document that could be done. http://purl.obolibrary.org/obo/IAO_0000628 genome announcement textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes the generation and public release of a novel, draft genome sequence. http://purl.obolibrary.org/obo/IAO_0000629 keyword textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity listing keywords indicating the major theme(s) of a document. http://purl.obolibrary.org/obo/IAO_0000632 study limitations textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity addressing a shortcoming or bias of a study design or execution. http://purl.obolibrary.org/obo/IAO_0000635 patients section http://purl.obolibrary.org/obo/IAO_0000314 document part A part of a document about the patients that participated in a study. http://purl.obolibrary.org/obo/IAO_0000636 patients textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity expressing information regarding the patients used in a study. http://purl.obolibrary.org/obo/IAO_0000638 pre-publication history textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information. http://purl.obolibrary.org/obo/IAO_0000640 related work textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that discusses work from other publications and expresses their relevancy to the content of a document. http://purl.obolibrary.org/obo/IAO_0000642 requirements textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses the requirements necessary to use a resource, e.g. software. http://purl.obolibrary.org/obo/IAO_0000643 statistical analysis textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity documenting statistical analysis tools and techniques employed. http://purl.obolibrary.org/obo/IAO_8000001 base ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies. http://purl.obolibrary.org/obo/IAO_8000003 main release ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is intended to be the primary release product and the one consumed by the majority of tools. http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module. http://purl.obolibrary.org/obo/IAO_8000007 curation subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation. http://purl.obolibrary.org/obo/IAO_8000008 analysis subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module An ontology module that is intended for usage in analysis or discovery applications. http://purl.obolibrary.org/obo/IAO_8000013 reasoned ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available. http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV. http://purl.obolibrary.org/obo/IAO_8000015 template generated ontology module http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module An ontology module that is automatically generated from a template specification and fillers for slots in that template. http://purl.obolibrary.org/obo/IAO_8000018 obo basic subset ontology module http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports http://purl.obolibrary.org/obo/APOLLO_SV_00000522 source code repository http://purl.obolibrary.org/obo/IAO_0000310 document A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc. http://purl.obolibrary.org/obo/APOLLO_SV_00000524 compiling software http://purl.obolibrary.org/obo/APOLLO_SV_00000008 software development A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions. http://purl.obolibrary.org/obo/APOLLO_SV_00000525 compiled software code http://purl.obolibrary.org/obo/IAO_0000010 software A software that is the specified output of some compilation of software process http://purl.obolibrary.org/obo/APOLLO_SV_00000554 disease surveillance data http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is about some disease surveillance. http://purl.obolibrary.org/obo/APOLLO_SV_00002024 facultative role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by an organism in virtue of the fact that it is in intimate association with one or more organisms of different species, and is realized by bodily benefit to that organism as an occurrent part of a symbiosis with the other organisms. This bodily benefit takes the place of the organism or some relatively isolated part of the organism realizing some normal homeostasis disposition itself. http://purl.obolibrary.org/obo/DRON_00000074 drug product http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that (1) contains at least one scattered molecular aggregate as part and (2) is intended, when administered to an organism, to produce some therapeutic and/or psychoactive effect. http://purl.obolibrary.org/obo/VO_0000278 vaccine function http://purl.obolibrary.org/obo/BFO_0000034 function vaccine function is a function that inheres in a vaccine that induces protective immune response against a disease. It is realized in the immunization process in the host. http://purl.obolibrary.org/obo/APOLLO_SV_00000558 case series http://purl.obolibrary.org/obo/OBI_0000066 investigation An investigation that realizes the concretization of some disease state design and that has as an occurrent part some population survey that has specified input some case definition. http://purl.obolibrary.org/obo/ENVO_01001078 weather http://purl.obolibrary.org/obo/ENVO_01001081 environmental variability Environmental variability which inheres in an astronomical body part or in outer space. http://purl.obolibrary.org/obo/ENVO_01001079 atmospheric weather http://purl.obolibrary.org/obo/ENVO_01001078 weather Weather which inheres in an atmosphere. http://purl.obolibrary.org/obo/ENVO_01001081 environmental variability http://purl.obolibrary.org/obo/ENVO_01000203 environmental condition A condition which inheres in an environmental system by virtue of that system undergoing variation in its composition, the distribution of the qualities its components bear, and/or in the processes which occur within it and which it participates in. http://purl.obolibrary.org/obo/APOLLO_SV_00000572 odor-baited trap control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000414 adult vector control strategy An adult vector control strategy that has 1) an action specification that is realized by the use of mosquito traps that leverage natural or synthetic human odors as bait, and 2) an objective specification that is realized by preventing potentially infectious contacting between some mosquito vector and some human host. http://purl.obolibrary.org/obo/APOLLO_SV_00000573 zoo-prophylaxis control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy An infectious disease control strategy that attempts to prevent infection of susceptible human host organisms in a particular geographical region by increasing the population of domesticated animals in that region, such that less mosquitoes feed on humans. http://purl.obolibrary.org/obo/NCBITaxon_10912 Rotavirus http://purl.obolibrary.org/obo/NCBITaxon_689832 Sedoreovirinae Rotaviruses http://purl.obolibrary.org/obo/NCBITaxon_1496 Clostridioides difficile http://purl.obolibrary.org/obo/NCBITaxon_1870884 Clostridioides Peptoclostridium difficile http://purl.obolibrary.org/obo/NCBITaxon_210 Helicobacter pylori http://purl.obolibrary.org/obo/NCBITaxon_209 Helicobacter Helicobacter nemestrinae http://purl.obolibrary.org/obo/NCBITaxon_31245 Schistosomatidae http://purl.obolibrary.org/obo/NCBITaxon_31244 Schistosomatoidea blood flukes http://purl.obolibrary.org/obo/NCBITaxon_662 Vibrio http://purl.obolibrary.org/obo/NCBITaxon_641 Vibrionaceae Pacinia http://purl.obolibrary.org/obo/NCBITaxon_470 Acinetobacter baumannii http://purl.obolibrary.org/obo/NCBITaxon_909768 Acinetobacter calcoaceticus/baumannii complex Bacterium anitratum http://purl.obolibrary.org/obo/NCBITaxon_186804 Peptostreptococcaceae http://purl.obolibrary.org/obo/NCBITaxon_186802 Clostridiales Clostridium cluster XI http://purl.obolibrary.org/obo/NCBITaxon_468 Moraxellaceae http://purl.obolibrary.org/obo/NCBITaxon_72274 Pseudomonadales Branhamaceae http://purl.obolibrary.org/obo/NCBITaxon_6179 Digenea http://purl.obolibrary.org/obo/NCBITaxon_6178 Trematoda flukes http://purl.obolibrary.obo/obo/NCBITaxon_7160 Aedes albopictus http://purl.obolibrary.org/obo/NCBITaxon_53541 Stegomyia forest day mosquito http://purl.obolibrary.org/obo/NCBITaxon_727 Haemophilus influenzae http://purl.obolibrary.org/obo/NCBITaxon_724 Haemophilus Mycobacterium influenzae http://purl.obolibrary.org/obo/NCBITaxon_10244 Monkeypox virus http://purl.obolibrary.org/obo/NCBITaxon_10242 Orthopoxvirus monkey pox virus http://purl.obolibrary.org/obo/NCBITaxon_11103 Hepatitis C virus http://purl.obolibrary.org/obo/NCBITaxon_11102 Hepacivirus post-transfusion hepatitis non A non B virus http://purl.obolibrary.org/obo/NCBITaxon_11676 Human immunodeficiency virus 1 http://purl.obolibrary.org/obo/NCBITaxon_11652 Primate lentivirus group human immunodeficiency virus-1 HIV-1 http://purl.obolibrary.org/obo/NCBITaxon_11709 Human immunodeficiency virus 2 http://purl.obolibrary.org/obo/NCBITaxon_11652 Primate lentivirus group human immunodeficiency virus type 2, HIV-2 http://purl.obolibrary.org/obo/NCBITaxon_12475 Hepatitis delta virus http://purl.obolibrary.org/obo/NCBITaxon_39759 Deltavirus hepatitis delta virus HDV http://purl.obolibrary.org/obo/NCBITaxon_1773 Mycobacterium tuberculosis http://purl.obolibrary.org/obo/NCBITaxon_77643 Mycobacterium tuberculosis complex Mycobacterium tuberculosis var. hominis http://purl.obolibrary.org/obo/NCBITaxon_186540 Sudan ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus Sudan Ebola virus http://purl.obolibrary.org/obo/NCBITaxon_485 Neisseria gonorrhoeae http://purl.obolibrary.org/obo/NCBITaxon_482 Neisseria Micrococcus gonorrhoeae http://purl.obolibrary.org/obo/NCBITaxon_565995 Bundibugyo ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus Ebolavirus bundibugyo http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region temporal instant. http://purl.obolibrary.org/obo/NCBITaxon_10090 Mus musculus http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota House mouse http://purl.obolibrary.org/obo/NCBITaxon_11292 Rabies lyssavirus http://purl.obolibrary.org/obo/NCBITaxon_11286 Lyssavirus Rabies virus http://purl.obolibrary.org/obo/NCBITaxon_12080 Human poliovirus 1 http://purl.obolibrary.org/obo/NCBITaxon_138950 Enterovirus C poliovirus type 1 PV1 http://purl.obolibrary.org/obo/NCBITaxon_12086 Human poliovirus 3 http://purl.obolibrary.org/obo/NCBITaxon_138950 Enterovirus C Poliovirus type 3 http://purl.obolibrary.org/obo/NCBITaxon_12092 Hepatovirus A http://purl.obolibrary.org/obo/NCBITaxon_12091 Hepatovirus Hepatitis A virus http://purl.obolibrary.org/obo/NCBITaxon_1280 Staphylococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1279 Staphylococcus Streptococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1392 Bacillus anthracis http://purl.obolibrary.org/obo/NCBITaxon_86661 Bacillus cereus group anthrax bacterium http://purl.obolibrary.org/obo/NCBITaxon_36330 Plasmodium ovale http://purl.obolibrary.org/obo/NCBITaxon_418103 Plasmodium (Plasmodium) malaria parasite p. ovale http://purl.obolibrary.org/obo/NCBITaxon_520 Bordetella pertussis http://purl.obolibrary.org/obo/NCBITaxon_517 Bordetella Microbe de la coqueluche http://purl.obolibrary.org/obo/NCBITaxon_5833 Plasmodium falciparum http://purl.obolibrary.org/obo/NCBITaxon_418107 Plasmodium (Laverania) plasmodium (laverania) falciparum http://purl.obolibrary.org/obo/NCBITaxon_5855 Plasmodium vivax http://purl.obolibrary.org/obo/NCBITaxon_418103 Plasmodium (Plasmodium) malaria parasite p. vivax http://purl.obolibrary.org/obo/NCBITaxon_813 Chlamydia trachomatis http://purl.obolibrary.org/obo/NCBITaxon_810 Chlamydia Rickettsia trachomatis http://purl.obolibrary.org/obo/NCBITaxon_12110 Foot-and-mouth disease virus http://purl.obolibrary.org/obo/NCBITaxon_12109 Aphthovirus foot-and-mouth disease virus FMDV http://purl.obolibrary.org/obo/NCBITaxon_693996 Alphacoronavirus http://purl.obolibrary.org/obo/NCBITaxon_693995 Coronavirinae Group 1 species http://purl.obolibrary.org/obo/NCBITaxon_142786 Norovirus http://purl.obolibrary.org/obo/NCBITaxon_11974 Caliciviridae Norwalk-like viruses http://purl.obolibrary.org/obo/NCBITaxon_72293 Helicobacteraceae http://purl.obolibrary.org/obo/NCBITaxon_213849 Campylobacterales Helicobacter group http://purl.obolibrary.org/obo/NCBITaxon_11102 Hepacivirus http://purl.obolibrary.org/obo/NCBITaxon_11050 Flaviviridae Hepatitis C-like viruses http://purl.obolibrary.org/obo/NCBITaxon_11229 Morbillivirus http://purl.obolibrary.org/obo/NCBITaxon_11158 Paramyxoviridae Morbilliviruses http://purl.obolibrary.org/obo/NCBITaxon_11244 Pneumoviridae http://purl.obolibrary.org/obo/NCBITaxon_11157 Mononegavirales Pneumovirinae http://purl.obolibrary.org/obo/NCBITaxon_11584 Phlebovirus http://purl.obolibrary.org/obo/NCBITaxon_11571 Bunyaviridae Phleboviruses http://purl.obolibrary.org/obo/NCBITaxon_11646 Lentivirus http://purl.obolibrary.org/obo/NCBITaxon_327045 Orthoretrovirinae Lentivirinae http://purl.obolibrary.org/obo/NCBITaxon_11652 Primate lentivirus group http://purl.obolibrary.org/obo/NCBITaxon_11646 Lentivirus Primate immunodeficiency viruses http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi http://purl.obolibrary.org/obo/NCBITaxon_117570 Teleostomi bony vertebrates http://purl.obolibrary.org/obo/NCBITaxon_1224 Proteobacteria http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria purple photosynthetic bacteria and relatives http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_1224 Proteobacteria gamma subgroup http://purl.obolibrary.org/obo/NCBITaxon_1239 Firmicutes http://purl.obolibrary.org/obo/NCBITaxon_1783272 Terrabacteria group Gram-postive bacterium http://purl.obolibrary.org/obo/NCBITaxon_1279 Staphylococcus http://purl.obolibrary.org/obo/NCBITaxon_90964 Staphylococcaceae Aurococcus http://purl.obolibrary.org/obo/NCBITaxon_135625 Pasteurellales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria Pasteruellaceae group http://purl.obolibrary.org/obo/NCBITaxon_138948 Enterovirus A http://purl.obolibrary.org/obo/NCBITaxon_12059 Enterovirus Human enterovirus A http://purl.obolibrary.org/obo/NCBITaxon_138950 Enterovirus C http://purl.obolibrary.org/obo/NCBITaxon_12059 Enterovirus Poliovirus http://purl.obolibrary.org/obo/NCBITaxon_1760 Actinobacteria http://purl.obolibrary.org/obo/NCBITaxon_201174 Actinobacteria High GC gram-positive bacteria http://purl.obolibrary.org/obo/NCBITaxon_1763 Mycobacterium http://purl.obolibrary.org/obo/NCBITaxon_1762 Mycobacteriaceae Mycobacterium Lehmann and Neumann 1896 http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_11266 Filoviridae Ebola-like virus http://purl.obolibrary.org/obo/NCBITaxon_201174 Actinobacteria http://purl.obolibrary.org/obo/NCBITaxon_1783272 Terrabacteria group not Actinobacteria Cavalier-Smith 2002 http://purl.obolibrary.org/obo/NCBITaxon_204428 Chlamydiae http://purl.obolibrary.org/obo/NCBITaxon_1783257 PVC group Chlamydaeota http://purl.obolibrary.org/obo/NCBITaxon_204429 Chlamydiia http://purl.obolibrary.org/obo/NCBITaxon_204428 Chlamydiae Chlamydiae http://purl.obolibrary.org/obo/NCBITaxon_28216 Betaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_1224 Proteobacteria beta subgroup http://purl.obolibrary.org/obo/NCBITaxon_29547 Epsilonproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_68525 delta/epsilon subdivisions not Epsilobacteria http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda http://purl.obolibrary.org/obo/NCBITaxon_1338369 Dipnotetrapodomorpha tetrapods http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda amniotes http://purl.obolibrary.org/obo/NCBITaxon_33511 Deuterostomia http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria deuterostomes http://purl.obolibrary.org/obo/NCBITaxon_33630 Alveolata http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota alveolates http://purl.obolibrary.org/obo/NCBITaxon_33682 Euglenozoa http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota Euglenozoans http://purl.obolibrary.org/obo/NCBITaxon_35268 Retro-transcribing viruses http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus Retroid viruses http://purl.obolibrary.org/obo/NCBITaxon_35325 dsRNA viruses http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus dsRNA nonenveloped viruses http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota mammals http://purl.obolibrary.org/obo/NCBITaxon_418103 Plasmodium (Plasmodium) http://purl.obolibrary.org/obo/NCBITaxon_5820 Plasmodium plasmodium http://purl.obolibrary.org/obo/NCBITaxon_418107 Plasmodium (Laverania) http://purl.obolibrary.org/obo/NCBITaxon_5820 Plasmodium laverania http://purl.obolibrary.org/obo/NCBITaxon_422676 Aconoidasida http://purl.obolibrary.org/obo/NCBITaxon_5794 Apicomplexa hematozoa http://purl.obolibrary.org/obo/NCBITaxon_482 Neisseria http://purl.obolibrary.org/obo/NCBITaxon_481 Neisseriaceae Gonococcus http://purl.obolibrary.org/obo/NCBITaxon_543 Enterobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_91347 Enterobacterales Enterobacteraceae http://purl.obolibrary.org/obo/NCBITaxon_5653 Kinetoplastida http://purl.obolibrary.org/obo/NCBITaxon_33682 Euglenozoa kinetoplasts http://purl.obolibrary.org/obo/NCBITaxon_5794 Apicomplexa http://purl.obolibrary.org/obo/NCBITaxon_33630 Alveolata apicomplexans http://purl.obolibrary.org/obo/NCBITaxon_5819 Haemosporida http://purl.obolibrary.org/obo/NCBITaxon_422676 Aconoidasida haemosporina http://purl.obolibrary.org/obo/NCBITaxon_6157 Platyhelminthes http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria flatworms http://purl.obolibrary.org/obo/NCBITaxon_68525 delta/epsilon subdivisions http://purl.obolibrary.org/obo/NCBITaxon_1224 Proteobacteria not Thiobacteria http://purl.obolibrary.org/obo/NCBITaxon_7157 Culicidae http://purl.obolibrary.org/obo/NCBITaxon_41827 Culicoidea mosquitos http://purl.obolibrary.org/obo/NCBITaxon_7711 Chordata http://purl.obolibrary.org/obo/NCBITaxon_33511 Deuterostomia chordates http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata http://purl.obolibrary.org/obo/NCBITaxon_89593 Craniata vertebrates http://purl.obolibrary.org/obo/NCBITaxon_7776 Gnathostomata http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata jawed vertebrates http://purl.obolibrary.org/obo/NCBITaxon_80840 Burkholderiales http://purl.obolibrary.org/obo/NCBITaxon_28216 Betaproteobacteria Burkholderia/Oxalobacter/Ralstonia group http://purl.obolibrary.org/obo/NCBITaxon_810 Chlamydia http://purl.obolibrary.org/obo/NCBITaxon_1113537 Chlamydia/Chlamydophila group Rickettsiaformis http://purl.obolibrary.org/obo/NCBITaxon_85007 Corynebacteriales http://purl.obolibrary.org/obo/NCBITaxon_1760 Actinobacteria Corynebacterineae http://purl.obolibrary.org/obo/NCBITaxon_90964 Staphylococcaceae http://purl.obolibrary.org/obo/NCBITaxon_1385 Bacillales Staphylococcus group http://purl.obolibrary.org/obo/NCBITaxon_91061 Bacilli http://purl.obolibrary.org/obo/NCBITaxon_1239 Firmicutes Firmibacteria http://purl.obolibrary.org/obo/NCBITaxon_91347 Enterobacterales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria Enterobacteriales http://purl.obolibrary.org/obo/NCBITaxon_9347 Eutheria http://purl.obolibrary.org/obo/NCBITaxon_32525 Theria placentals http://purl.obolibrary.org/obo/NCBITaxon_28901 Salmonella enterica http://purl.obolibrary.org/obo/NCBITaxon_590 Salmonella Salmonella enterica ser. choleraesuis http://purl.obolibrary.org/obo/NCBITaxon_59201 Salmonella enterica subsp. enterica http://purl.obolibrary.org/obo/NCBITaxon_28901 Salmonella enterica Salmonella enterica subsp. I http://purl.obolibrary.org/obo/GEO_000000335 contiguous land mass http://purl.obolibrary.org/obo/GEO_000000334 subcontinental land mass contiguous continental land mass http://purl.obolibrary.org/obo/NCBITaxon_127906 Vibrio cholerae O1 http://purl.obolibrary.org/obo/NCBITaxon_666 Vibrio cholerae Vibrio cholerae serogroup O1 http://purl.obolibrary.org/obo/NCBITaxon_54388 Salmonella enterica subsp. enterica serovar Paratyphi A http://purl.obolibrary.org/obo/NCBITaxon_59201 Salmonella enterica subsp. enterica Salmonella choleraesuis subsp. choleraesuis serovar Paratyphi A http://purl.obolibrary.org/obo/NCBITaxon_12814 Respiratory syncytial virus http://purl.obolibrary.org/obo/NCBITaxon_11245 Pneumovirus respiratory syncytial virus RSV http://purl.obolibrary.org/obo/NCBITaxon_186539 Reston ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus Reston Ebola virus http://purl.obolibrary.org/obo/NCBITaxon_186541 Tai Forest ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus Ivory Coast ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_28295 Porcine epidemic diarrhea virus http://purl.obolibrary.org/obo/NCBITaxon_693996 Alphacoronavirus PEDV http://purl.obolibrary.org/obo/NCBITaxon_11520 Influenza B virus http://purl.obolibrary.org/obo/NCBITaxon_197912 Influenzavirus B Influenza virus type B http://purl.obolibrary.org/obo/NCBITaxon_562 Escherichia coli http://purl.obolibrary.org/obo/NCBITaxon_561 Escherichia Enterococcus coli http://purl.obolibrary.org/obo/NCBITaxon_9544 Macaca mulatta http://purl.obolibrary.org/obo/NCBITaxon_9539 Macaca rhesus monkeys http://purl.obolibrary.org/obo/NCBITaxon_90370 Salmonella enterica subsp. enterica serovar Typhi http://purl.obolibrary.org/obo/NCBITaxon_59201 Salmonella enterica subsp. enterica Salmonella typhi http://purl.obolibrary.org/obo/NCBITaxon_135623 Vibrionales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria Vibrionaceae group http://purl.obolibrary.org/obo/NCBITaxon_72274 Pseudomonadales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria Pseudomonaceae/Moraxellaceae group http://purl.obolibrary.org/obo/NCBITaxon_1313 Streptococcus pneumoniae http://purl.obolibrary.org/obo/NCBITaxon_1301 Streptococcus Micrococcus pneumoniae http://purl.obolibrary.org/obo/NCBITaxon_487 Neisseria meningitidis http://purl.obolibrary.org/obo/NCBITaxon_482 Neisseria Neisseria weichselbaumii http://purl.obolibrary.org/obo/NCBITaxon_666 Vibrio cholerae http://purl.obolibrary.org/obo/NCBITaxon_662 Vibrio Vibrio comma http://purl.obolibrary.org/obo/NCBITaxon_7159 Aedes aegypti http://purl.obolibrary.org/obo/NCBITaxon_53541 Stegomyia Stegomyia aegypti http://purl.obolibrary.org/obo/IAO_8000000 ontology module http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part ontology file http://purl.obolibrary.org/obo/NCBITaxon_314293 Simiiformes http://purl.obolibrary.org/obo/NCBITaxon_376913 Haplorrhini Anthropoidea http://purl.obolibrary.org/obo/NCBITaxon_9443 Primates http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires primates http://purl.obolibrary.org/obo/NCBITaxon_9527 Cercopithecidae http://purl.obolibrary.org/obo/NCBITaxon_314294 Cercopithecoidea monkeys http://purl.obolibrary.org/obo/NCBITaxon_9539 Macaca http://purl.obolibrary.org/obo/NCBITaxon_9528 Cercopithecinae macaques http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/APOLLO_SV_00000590 website with data http://purl.obolibrary.org/obo/FBcv_0000667 website http://purl.obolibrary.org/obo/NCBITaxon_160 Treponema pallidum http://purl.obolibrary.org/obo/NCBITaxon_157 Treponema http://purl.obolibrary.org/obo/NCBITaxon_1717 Corynebacterium diphtheriae http://purl.obolibrary.org/obo/NCBITaxon_1716 Corynebacterium http://purl.obolibrary.org/obo/NCBITaxon_6181 Schistosoma http://purl.obolibrary.org/obo/NCBITaxon_31245 Schistosomatidae http://purl.obolibrary.org/obo/NCBITaxon_909768 Acinetobacter calcoaceticus/baumannii complex http://purl.obolibrary.org/obo/NCBITaxon_469 Acinetobacter http://purl.obolibrary.org/obo/NCBITaxon_672 Vibrio vulnificus http://purl.obolibrary.org/obo/NCBITaxon_662 Vibrio http://purl.obolibrary.org/obo/NCBITaxon_717610 Vibrio harveyi group http://purl.obolibrary.org/obo/NCBITaxon_662 Vibrio http://purl.obolibrary.org/obo/NCBITaxon_9615 Canis lupus familiaris http://purl.obolibrary.org/obo/NCBITaxon_9612 Canis lupus http://purl.obolibrary.org/obo/NCBITaxon_157 Treponema http://purl.obolibrary.org/obo/NCBITaxon_137 Spirochaetaceae http://purl.obolibrary.org/obo/NCBITaxon_5758 Entamoeba http://purl.obolibrary.org/obo/NCBITaxon_33084 Entamoebidae http://purl.obolibrary.org/obo/NCBITaxon_9090 Coturnix http://purl.obolibrary.org/obo/NCBITaxon_466544 Perdicinae http://purl.obolibrary.org/obo/NCBITaxon_5693 Trypanosoma cruzi http://purl.obolibrary.org/obo/NCBITaxon_47570 Schizotrypanum http://purl.obolibrary.org/obo/NCBITaxon_7176 Culex quinquefasciatus http://purl.obolibrary.org/obo/NCBITaxon_518105 Culex pipiens complex http://purl.obolibrary.org/obo/NCBITaxon_237895 Cryptosporidium hominis http://purl.obolibrary.org/obo/NCBITaxon_5806 Cryptosporidium http://purl.obolibrary.org/obo/NCBITaxon_5807 Cryptosporidium parvum http://purl.obolibrary.org/obo/NCBITaxon_5806 Cryptosporidium http://purl.obolibrary.org/obo/NCBITaxon_1870884 Clostridioides http://purl.obolibrary.org/obo/NCBITaxon_186804 Peptostreptococcaceae http://purl.obolibrary.org/obo/NCBITaxon_5738 Diplomonadida http://purl.obolibrary.org/obo/NCBITaxon_207245 Fornicata http://purl.obolibrary.org/obo/NCBITaxon_9796 Equus caballus http://purl.obolibrary.org/obo/NCBITaxon_35510 Equus http://purl.obolibrary.org/obo/NCBITaxon_469 Acinetobacter http://purl.obolibrary.org/obo/NCBITaxon_468 Moraxellaceae http://purl.obolibrary.org/obo/NCBITaxon_29169 Ancylostoma http://purl.obolibrary.org/obo/NCBITaxon_53469 Ancylostomatinae http://purl.obolibrary.org/obo/NCBITaxon_68459 Giardiinae http://purl.obolibrary.org/obo/NCBITaxon_5739 Hexamitidae http://purl.obolibrary.org/obo/NCBITaxon_670 Vibrio parahaemolyticus http://purl.obolibrary.org/obo/NCBITaxon_717610 Vibrio harveyi group http://purl.obolibrary.org/obo/NCBITaxon_6180 Strigeidida http://purl.obolibrary.org/obo/NCBITaxon_6179 Digenea http://purl.obolibrary.org/obo/NCBITaxon_47570 Schizotrypanum http://purl.obolibrary.org/obo/NCBITaxon_5690 Trypanosoma http://purl.obolibrary.org/obo/APOLLO_SV_00000561 disease transmission model software http://purl.obolibrary.org/obo/APOLLO_SV_00000007 simulation software application http://purl.obolibrary.org/obo/APOLLO_SV_00000034 simulation of organism http://purl.obolibrary.org/obo/APOLLO_SV_00000070 simulation http://purl.obolibrary.org/obo/APOLLO_SV_00000128 control strategy target population fraction http://purl.obolibrary.org/obo/APOLLO_SV_00000075 infectious disease control objective specification http://purl.obolibrary.org/obo/APOLLO_SV_00000327 quarantine control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000150 vaccination reactive end point fraction http://purl.obolibrary.org/obo/APOLLO_SV_00000103 control strategy reactive endpoint fraction http://purl.obolibrary.org/obo/APOLLO_SV_00000196 ring vaccination individual treatment control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000136 vaccination control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000294 agent-based disease transmission model http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model http://purl.obolibrary.org/obo/APOLLO_SV_00000303 compartmental disease transmission model http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model http://purl.obolibrary.org/obo/APOLLO_SV_00000168 nursery school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000176 school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000169 primary school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000176 school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000170 secondary school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000176 school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000044 nursery school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000178 school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000062 primary school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000178 school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000132 secondary school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000178 school student population http://purl.obolibrary.org/obo/APOLLO_SV_00000197 agent level population and environment census http://purl.obolibrary.org/obo/APOLLO_SV_00000188 population and environment census http://purl.obolibrary.org/obo/APOLLO_SV_00000236 asymptomatic host http://purl.obolibrary.org/obo/APOLLO_SV_00000238 host organism http://purl.obolibrary.org/obo/APOLLO_SV_00000385 real time span category definition http://purl.obolibrary.org/obo/APOLLO_SV_00000242 name of temporal interval http://purl.obolibrary.org/obo/APOLLO_SV_00000386 real date span category definition http://purl.obolibrary.org/obo/APOLLO_SV_00000242 name of temporal interval http://purl.obolibrary.org/obo/APOLLO_SV_00000082 Bayesian network http://purl.obolibrary.org/obo/APOLLO_SV_00000246 joint probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000078 beta distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000080 uniform distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000081 triangular distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000274 maximum seasonal latitude http://purl.obolibrary.org/obo/APOLLO_SV_00000273 seasonal function parameter http://purl.obolibrary.org/obo/APOLLO_SV_00000275 minimum seasonal latitude http://purl.obolibrary.org/obo/APOLLO_SV_00000273 seasonal function parameter http://purl.obolibrary.org/obo/APOLLO_SV_00000276 seasonal temporal offset http://purl.obolibrary.org/obo/APOLLO_SV_00000273 seasonal function parameter http://purl.obolibrary.org/obo/APOLLO_SV_00000307 endemic http://purl.obolibrary.org/obo/APOLLO_SV_00000306 infection in ecosystem http://purl.obolibrary.org/obo/APOLLO_SV_00000250 discrete parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000477 parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000251 continuous parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000477 parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000288 community transmission multiplier http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000124 school closure duration http://purl.obolibrary.org/obo/APOLLO_SV_00000794 infectious disease control strategy action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000794 infectious disease control strategy action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000120 vaccination course http://purl.obolibrary.org/obo/APOLLO_SV_00000795 individual treatment control strategy action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000083 temporal Bayesian network http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/APOLLO_SV_00000092 95% confidence interval http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/APOLLO_SV_00000093 Bayesian credible interval http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/APOLLO_SV_00000121 species http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/APOLLO_SV_00000127 control strategy target populations and prioritization http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/APOLLO_SV_00000147 inter-personal contact probability http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/NCBITaxon_11588 Rift Valley fever virus http://purl.obolibrary.org/obo/NCBITaxon_1933187 Rift Valley fever phlebovirus http://purl.obolibrary.org/obo/NCBITaxon_64320 Zika virus http://purl.obolibrary.org/obo/NCBITaxon_297696 Spondweni virus group http://purl.obolibrary.org/obo/NCBITaxon_35237 dsDNA viruses, no RNA stage http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus http://purl.obolibrary.org/obo/NCBITaxon_39759 Deltavirus http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus http://purl.obolibrary.org/obo/NCBITaxon_439488 ssRNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus http://purl.obolibrary.org/obo/NCBITaxon_11269 Marburg marburgvirus http://purl.obolibrary.org/obo/NCBITaxon_186537 Marburgvirus http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_197911 Influenzavirus A http://purl.obolibrary.org/obo/NCBITaxon_44482 Anopheles http://purl.obolibrary.org/obo/NCBITaxon_7164 Anopheles http://purl.obolibrary.org/obo/APOLLO_SV_00001008 TODO http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000182 history http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/APOLLO_SV_00000118 latent period http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/APOLLO_SV_00000140 infectious period http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/COB_0000035 completely executed planned process http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/ENVO_02500000 environmental system process http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/APOLLO_SV_00000144 disposition to become contaminated with a pathogen http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/APOLLO_SV_00000182 contagiousness http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/OGMS_0000032 homeostasis http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/CHEBI_36044 antiviral drug http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/OMRSE_00000051 organization role http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/OMRSE_00000172 health care function http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000024 fiat object part http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000027 object_aggregate http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000142 one-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000146 two-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000147 zero-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000029 site http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/APOLLO_SV_00000130 reactive control strategy test http://purl.obolibrary.org/obo/IAO_0000001 conditional specification http://purl.obolibrary.org/obo/IAO_0000034 time trigger http://purl.obolibrary.org/obo/IAO_0000001 conditional specification http://purl.obolibrary.org/obo/UO_0000001 length unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/UO_0000002 mass unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/UO_0000003 time unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/GEO_000000789 plane angle measurement unit label http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/APOLLO_SV_00000141 protect against effect of pathogen http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://purl.obolibrary.org/obo/APOLLO_SV_00000793 epidemic simulator action specification http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000794 infectious disease control strategy action specification http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/APOLLO_SV_00000135 ascertainment fraction http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/APOLLO_SV_00000200 population strata definition http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/APOLLO_SV_00000202 indexable Apollo item http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/APOLLO_SV_00000273 seasonal function parameter http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/APOLLO_SV_00000282 target populations and prioritizations information http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/APOLLO_SV_00000289 maximum travel distance in km information http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/IAO_0000429 email address http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/UO_0000000 unit http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/APOLLO_SV_00000134 ascertainment delay http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000057 contour plot http://purl.obolibrary.org/obo/IAO_0000038 graph http://purl.obolibrary.org/obo/APOLLO_SV_00000149 susceptibility measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.obolibrary.org/obo/IAO_0000582 time stamped measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.org/obo/owl/FBcv#FBcv_0000209 news article http://purl.obolibrary.org/obo/IAO_0000310 document http://purl.obolibrary.org/obo/APOLLO_SV_00000562 data format converter http://purl.obolibrary.org/obo/IAO_0000594 software application http://purl.obolibrary.org/obo/APOLLO_SV_00000565 computational modeling toolkit http://purl.obolibrary.org/obo/IAO_0000594 software application http://purl.obolibrary.org/obo/GEO_000000391 geopoli organization http://purl.obolibrary.org/obo/OBI_0000245 organization http://purl.obolibrary.org/obo/NCBITaxon_10239 Virus http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2157 Archaea http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_131567 cellular organisms http://purl.obolibrary.org/obo/APOLLO_SV_00000326 epidemic investigation design http://purl.obolibrary.org/obo/OBI_0500000 study design http://purl.obolibrary.org/obo/APOLLO_SV_00000076 obsolete μ http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000077 obsolete σ http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000079 obsolete log normal distribution http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000091 obsolete immune http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000095 obsolete discrete probability distribution http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000160 obsolete contamination http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/IAO_0000008 obsolete_artifact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/IAO_0000018 obsolete_material_entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/IAO_0000128 obsolete_identifier http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/IAO_0000141 obsolete_digital quality http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/APOLLO_SV_00000137 vaccine valence http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count http://purl.obolibrary.org/obo/APOLLO_SV_00000395 name of temporal region http://purl.obolibrary.org/obo/IAO_0020000 identifier http://purl.obolibrary.org/obo/APOLLO_SV_00000030 hospital patient population http://purl.obolibrary.org/obo/OMRSE_00000023 collection of humans http://purl.obolibrary.org/obo/NCBITaxon_102793 H5N1 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_114727 H1N1 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_119210 H3N2 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_119218 H7N7 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_119220 H5N2 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_114729 H2N2 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_232441 H5N8 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_329376 H5N6 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_119214 H7N2 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_333278 H7N9 subtype http://purl.obolibrary.org/obo/NCBITaxon_11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_11053 Dengue virus 1 http://purl.obolibrary.org/obo/NCBITaxon_12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_11060 Dengue virus 2 http://purl.obolibrary.org/obo/NCBITaxon_12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_11069 Dengue virus 3 http://purl.obolibrary.org/obo/NCBITaxon_12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_11070 Dengue virus 4 http://purl.obolibrary.org/obo/NCBITaxon_12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_1641 Listeria grayi http://purl.obolibrary.org/obo/NCBITaxon_1637 Listeria http://purl.obolibrary.org/obo/NCBITaxon_1639 Listeria monocytogenes http://purl.obolibrary.org/obo/NCBITaxon_1637 Listeria http://purl.obolibrary.org/obo/NCBITaxon_1638 Listeria ivanovii http://purl.obolibrary.org/obo/NCBITaxon_1637 Listeria http://purl.obolibrary.org/obo/NCBITaxon_1783257 PVC group http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/NCBITaxon_203691 Spirochaetes http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/NCBITaxon_1783272 Terrabacteria group http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/NCBITaxon_451864 Dikarya http://purl.obolibrary.org/obo/NCBITaxon_4751 Fungi http://purl.obolibrary.org/obo/NCBITaxon_716545 saccharomyceta http://purl.obolibrary.org/obo/NCBITaxon_4890 Ascomycota http://purl.obolibrary.org/obo/NCBITaxon_53541 Stegomyia http://purl.obolibrary.org/obo/NCBITaxon_7158 Aedes http://purl.obolibrary.org/obo/NCBITaxon_53527 Culex http://purl.obolibrary.org/obo/NCBITaxon_7174 Culex http://purl.obolibrary.org/obo/NCBITaxon_114277 spotted fever group http://purl.obolibrary.org/obo/NCBITaxon_780 Rickettsia http://purl.obolibrary.org/obo/NCBITaxon_114292 typhus group http://purl.obolibrary.org/obo/NCBITaxon_780 Rickettsia http://purl.obolibrary.org/obo/NCBITaxon_1716 Corynebacterium http://purl.obolibrary.org/obo/NCBITaxon_1653 Corynebacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_36910 Clavispora http://purl.obolibrary.org/obo/NCBITaxon_27319 Metschnikowiaceae http://purl.obolibrary.org/obo/NCBITaxon_209 Helicobacter http://purl.obolibrary.org/obo/NCBITaxon_72293 Helicobacteraceae http://purl.obolibrary.org/obo/NCBITaxon_83158 Sarcoptoidea http://purl.obolibrary.org/obo/NCBITaxon_223472 Psoroptidia http://purl.obolibrary.org/obo/NCBITaxon_33278 Ancylostomatidae http://purl.obolibrary.org/obo/NCBITaxon_33277 Ancylostomatoidea http://purl.obolibrary.org/obo/NCBITaxon_53469 Ancylostomatinae http://purl.obolibrary.org/obo/NCBITaxon_33278 Ancylostomatidae http://purl.obolibrary.org/obo/NBO_0000034 sexual activity http://purl.obolibrary.org/obo/GO_0019098 reproductive behavior http://purl.obolibrary.org/obo/NCBITaxon_10241 Chordopoxvirinae http://purl.obolibrary.org/obo/NCBITaxon_10240 Poxviridae http://purl.obolibrary.org/obo/NCBITaxon_10242 Orthopoxvirus http://purl.obolibrary.org/obo/NCBITaxon_10241 Chordopoxvirinae http://purl.obolibrary.org/obo/NCBITaxon_10255 Variola virus http://purl.obolibrary.org/obo/NCBITaxon_10242 Orthopoxvirus http://purl.obolibrary.org/obo/NCBITaxon_10293 Alphaherpesvirinae http://purl.obolibrary.org/obo/NCBITaxon_10292 Herpesviridae http://purl.obolibrary.org/obo/NCBITaxon_10294 Simplexvirus http://purl.obolibrary.org/obo/NCBITaxon_10293 Alphaherpesvirinae http://purl.obolibrary.org/obo/NCBITaxon_10319 Varicellovirus http://purl.obolibrary.org/obo/NCBITaxon_10293 Alphaherpesvirinae http://purl.obolibrary.org/obo/NCBITaxon_10298 Human alphaherpesvirus 1 http://purl.obolibrary.org/obo/NCBITaxon_10294 Simplexvirus http://purl.obolibrary.org/obo/NCBITaxon_10310 Human alphaherpesvirus 2 http://purl.obolibrary.org/obo/NCBITaxon_10294 Simplexvirus http://purl.obolibrary.org/obo/NCBITaxon_10335 Human herpesvirus 3 http://purl.obolibrary.org/obo/NCBITaxon_10319 Varicellovirus http://purl.obolibrary.org/obo/NCBITaxon_10345 Suid herpesvirus 1 http://purl.obolibrary.org/obo/NCBITaxon_10319 Varicellovirus http://purl.obolibrary.org/obo/NCBITaxon_10405 Orthohepadnavirus http://purl.obolibrary.org/obo/NCBITaxon_10404 Hepadnaviridae http://purl.obolibrary.org/obo/NCBITaxon_10407 Hepatitis B virus http://purl.obolibrary.org/obo/NCBITaxon_10405 Orthohepadnavirus http://purl.obolibrary.org/obo/NCBITaxon_7158 Aedes http://purl.obolibrary.org/obo/NCBITaxon_1056966 Aedini http://purl.obolibrary.org/obo/NCBITaxon_945 Ehrlichia chaffeensis http://purl.obolibrary.org/obo/NCBITaxon_106178 canis group http://purl.obolibrary.org/obo/NCBITaxon_948 Anaplasma phagocytophilum http://purl.obolibrary.org/obo/NCBITaxon_106179 phagocytophilum group http://purl.obolibrary.org/obo/NCBITaxon_689832 Sedoreovirinae http://purl.obolibrary.org/obo/NCBITaxon_10880 Reoviridae http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_11018 Togaviridae http://purl.obolibrary.org/obo/NCBITaxon_11040 Rubivirus http://purl.obolibrary.org/obo/NCBITaxon_11018 Togaviridae http://purl.obolibrary.org/obo/NCBITaxon_11020 Barmah Forest virus http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_11029 Ross River virus http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_177874 WEEV complex http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_177875 SFV complex http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_177873 EEEV complex http://purl.obolibrary.org/obo/NCBITaxon_11019 Alphavirus http://purl.obolibrary.org/obo/NCBITaxon_11041 Rubella virus http://purl.obolibrary.org/obo/NCBITaxon_11040 Rubivirus http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_11050 Flaviviridae http://purl.obolibrary.org/obo/NCBITaxon_297696 Spondweni virus group http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_11052 Dengue virus group http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_29263 tick-borne encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_40005 Yellow fever virus group http://purl.obolibrary.org/obo/NCBITaxon_11051 Flavivirus http://purl.obolibrary.org/obo/NCBITaxon_12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_11052 Dengue virus group http://purl.obolibrary.org/obo/NCBITaxon_11072 Japanese encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_11079 Murray Valley encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_11080 St. Louis encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_11082 West Nile virus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_44025 Koutango virus http://purl.obolibrary.org/obo/NCBITaxon_11071 Japanese encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_693995 Coronavirinae http://purl.obolibrary.org/obo/NCBITaxon_11118 Coronaviridae http://purl.obolibrary.org/obo/NCBITaxon_28450 Burkholderia pseudomallei http://purl.obolibrary.org/obo/NCBITaxon_111527 pseudomallei group http://purl.obolibrary.org/obo/NCBITaxon_11158 Paramyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_11157 Mononegavirales http://purl.obolibrary.org/obo/NCBITaxon_11266 Filoviridae http://purl.obolibrary.org/obo/NCBITaxon_11157 Mononegavirales http://purl.obolibrary.org/obo/NCBITaxon_11270 Rhabdoviridae http://purl.obolibrary.org/obo/NCBITaxon_11157 Mononegavirales http://purl.obolibrary.org/obo/NCBITaxon_11159 Paramyxovirinae http://purl.obolibrary.org/obo/NCBITaxon_11158 Paramyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_39744 Rubulavirus http://purl.obolibrary.org/obo/NCBITaxon_11158 Paramyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_260964 Henipavirus http://purl.obolibrary.org/obo/NCBITaxon_11158 Paramyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_11234 Measles virus http://purl.obolibrary.org/obo/NCBITaxon_11229 Morbillivirus http://purl.obolibrary.org/obo/NCBITaxon_11245 Pneumovirus http://purl.obolibrary.org/obo/NCBITaxon_11244 Pneumoviridae http://purl.obolibrary.org/obo/NCBITaxon_186537 Marburgvirus http://purl.obolibrary.org/obo/NCBITaxon_11266 Filoviridae http://purl.obolibrary.org/obo/NCBITaxon_11286 Lyssavirus http://purl.obolibrary.org/obo/NCBITaxon_11270 Rhabdoviridae http://purl.obolibrary.org/obo/NCBITaxon_197911 Influenzavirus A http://purl.obolibrary.org/obo/NCBITaxon_11308 Orthomyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_197912 Influenzavirus B http://purl.obolibrary.org/obo/NCBITaxon_11308 Orthomyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_783 Rickettsia rickettsii http://purl.obolibrary.org/obo/NCBITaxon_114277 spotted fever group http://purl.obolibrary.org/obo/NCBITaxon_782 Rickettsia prowazekii http://purl.obolibrary.org/obo/NCBITaxon_114292 typhus group http://purl.obolibrary.org/obo/NCBITaxon_785 Rickettsia typhi http://purl.obolibrary.org/obo/NCBITaxon_114292 typhus group http://purl.obolibrary.org/obo/NCBITaxon_11598 Hantavirus http://purl.obolibrary.org/obo/NCBITaxon_11571 Bunyaviridae http://purl.obolibrary.org/obo/NCBITaxon_1933274 Guaroa orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_11572 Orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_11572 Orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_1933187 Rift Valley fever phlebovirus http://purl.obolibrary.org/obo/NCBITaxon_11584 Phlebovirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_11617 Arenaviridae http://purl.obolibrary.org/obo/NCBITaxon_327045 Orthoretrovirinae http://purl.obolibrary.org/obo/NCBITaxon_11632 Retroviridae http://purl.obolibrary.org/obo/NCBITaxon_8287 Sarcopterygii http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi http://purl.obolibrary.org/obo/NCBITaxon_234 Brucella http://purl.obolibrary.org/obo/NCBITaxon_118882 Brucellaceae http://purl.obolibrary.org/obo/NCBITaxon_776 Coxiella http://purl.obolibrary.org/obo/NCBITaxon_118968 Coxiellaceae http://purl.obolibrary.org/obo/NCBITaxon_118968 Coxiellaceae http://purl.obolibrary.org/obo/NCBITaxon_118969 Legionellales http://purl.obolibrary.org/obo/NCBITaxon_444 Legionellaceae http://purl.obolibrary.org/obo/NCBITaxon_118969 Legionellales http://purl.obolibrary.org/obo/NCBITaxon_32008 Burkholderia http://purl.obolibrary.org/obo/NCBITaxon_119060 Burkholderiaceae http://purl.obolibrary.org/obo/NCBITaxon_1457286 Dorylaimia http://purl.obolibrary.org/obo/NCBITaxon_119088 Enoplea http://purl.obolibrary.org/obo/NCBITaxon_6236 Rhabditida http://purl.obolibrary.org/obo/NCBITaxon_119089 Chromadorea http://purl.obolibrary.org/obo/NCBITaxon_12059 Enterovirus http://purl.obolibrary.org/obo/NCBITaxon_12058 Picornaviridae http://purl.obolibrary.org/obo/NCBITaxon_12091 Hepatovirus http://purl.obolibrary.org/obo/NCBITaxon_12058 Picornaviridae http://purl.obolibrary.org/obo/NCBITaxon_12109 Aphthovirus http://purl.obolibrary.org/obo/NCBITaxon_12058 Picornaviridae http://purl.obolibrary.org/obo/NCBITaxon_138951 Enterovirus D http://purl.obolibrary.org/obo/NCBITaxon_12059 Enterovirus http://purl.obolibrary.org/obo/NCBITaxon_147711 Rhinovirus A http://purl.obolibrary.org/obo/NCBITaxon_12059 Enterovirus http://purl.obolibrary.org/obo/NCBITaxon_6231 Nematoda http://purl.obolibrary.org/obo/NCBITaxon_1206794 Ecdysozoa http://purl.obolibrary.org/obo/NCBITaxon_88770 Panarthropoda http://purl.obolibrary.org/obo/NCBITaxon_1206794 Ecdysozoa http://purl.obolibrary.org/obo/NCBITaxon_28211 Alphaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_1224 Proteobacteria http://purl.obolibrary.org/obo/NCBITaxon_118969 Legionellales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_72273 Thiotrichales http://purl.obolibrary.org/obo/NCBITaxon_1236 Gammaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_186801 Clostridia http://purl.obolibrary.org/obo/NCBITaxon_1239 Firmicutes http://purl.obolibrary.org/obo/NCBITaxon_5796 Coccidia http://purl.obolibrary.org/obo/NCBITaxon_1280412 Conoidasida http://purl.obolibrary.org/obo/NCBITaxon_1301 Streptococcus http://purl.obolibrary.org/obo/NCBITaxon_1300 Streptococcaceae http://purl.obolibrary.org/obo/NCBITaxon_36470 Streptococcus sp. 'group A' http://purl.obolibrary.org/obo/NCBITaxon_1301 Streptococcus http://purl.obolibrary.org/obo/NCBITaxon_3193 Embryophyta http://purl.obolibrary.org/obo/NCBITaxon_131221 Streptophytina http://purl.obolibrary.org/obo/NCBITaxon_8492 Archosauria http://purl.obolibrary.org/obo/NCBITaxon_1329799 Archelosauria http://purl.obolibrary.org/obo/NCBITaxon_712 Pasteurellaceae http://purl.obolibrary.org/obo/NCBITaxon_135625 Pasteurellales http://purl.obolibrary.org/obo/NCBITaxon_137 Spirochaetaceae http://purl.obolibrary.org/obo/NCBITaxon_136 Spirochaetales http://purl.obolibrary.org/obo/NCBITaxon_1643685 Borreliaceae http://purl.obolibrary.org/obo/NCBITaxon_136 Spirochaetales http://purl.obolibrary.org/obo/NCBITaxon_186817 Bacillaceae http://purl.obolibrary.org/obo/NCBITaxon_1385 Bacillales http://purl.obolibrary.org/obo/NCBITaxon_186820 Listeriaceae http://purl.obolibrary.org/obo/NCBITaxon_1385 Bacillales http://purl.obolibrary.org/obo/NCBITaxon_86661 Bacillus cereus group http://purl.obolibrary.org/obo/NCBITaxon_1386 Bacillus http://purl.obolibrary.org/obo/NCBITaxon_31704 Coxsackievirus A16 http://purl.obolibrary.org/obo/NCBITaxon_138948 Enterovirus A http://purl.obolibrary.org/obo/NCBITaxon_39054 Enterovirus A71 http://purl.obolibrary.org/obo/NCBITaxon_138948 Enterovirus A http://purl.obolibrary.org/obo/NCBITaxon_42789 Enterovirus D68 http://purl.obolibrary.org/obo/NCBITaxon_138951 Enterovirus D http://purl.obolibrary.org/obo/NCBITaxon_314145 Laurasiatheria http://purl.obolibrary.org/obo/NCBITaxon_1437010 Boreoeutheria http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires http://purl.obolibrary.org/obo/NCBITaxon_1437010 Boreoeutheria http://purl.obolibrary.org/obo/NCBITaxon_6329 Trichocephalida http://purl.obolibrary.org/obo/NCBITaxon_1457286 Dorylaimia http://purl.obolibrary.org/obo/NCBITaxon_4891 Saccharomycetes http://purl.obolibrary.org/obo/NCBITaxon_147537 Saccharomycotina http://purl.obolibrary.org/obo/NCBITaxon_716546 leotiomyceta http://purl.obolibrary.org/obo/NCBITaxon_147538 Pezizomycotina http://purl.obolibrary.org/obo/NCBITaxon_451871 Eurotiomycetidae http://purl.obolibrary.org/obo/NCBITaxon_147545 Eurotiomycetes http://purl.obolibrary.org/obo/NCBITaxon_1513 Clostridium tetani http://purl.obolibrary.org/obo/NCBITaxon_1485 Clostridium http://purl.obolibrary.org/obo/NCBITaxon_1491 Clostridium botulinum http://purl.obolibrary.org/obo/NCBITaxon_1485 Clostridium http://purl.obolibrary.org/obo/NCBITaxon_8976 Galliformes http://purl.obolibrary.org/obo/NCBITaxon_1549675 Galloanserae http://purl.obolibrary.org/obo/NCBITaxon_8826 Anseriformes http://purl.obolibrary.org/obo/NCBITaxon_1549675 Galloanserae http://purl.obolibrary.org/obo/NCBITaxon_5820 Plasmodium http://purl.obolibrary.org/obo/NCBITaxon_1639119 Plasmodiidae http://purl.obolibrary.org/obo/NCBITaxon_138 Borrelia http://purl.obolibrary.org/obo/NCBITaxon_1643685 Borreliaceae http://purl.obolibrary.org/obo/NCBITaxon_170 Leptospiraceae http://purl.obolibrary.org/obo/NCBITaxon_1643688 Leptospirales http://purl.obolibrary.org/obo/NCBITaxon_632 Yersinia pestis http://purl.obolibrary.org/obo/NCBITaxon_1649845 Yersinia pseudotuberculosis complex http://purl.obolibrary.org/obo/NCBITaxon_11620 Lassa mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_11619 Junin mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_11628 Machupo mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_45219 Guanarito mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_45709 Sabia mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_649188 Lujo mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_1653394 Mammarenavirus http://purl.obolibrary.org/obo/NCBITaxon_171 Leptospira http://purl.obolibrary.org/obo/NCBITaxon_170 Leptospiraceae http://purl.obolibrary.org/obo/NCBITaxon_1769 Mycobacterium leprae http://purl.obolibrary.org/obo/NCBITaxon_1763 Mycobacterium http://purl.obolibrary.org/obo/NCBITaxon_77643 Mycobacterium tuberculosis complex http://purl.obolibrary.org/obo/NCBITaxon_1763 Mycobacterium http://purl.obolibrary.org/obo/NCBITaxon_480418 Mycobacterium lepromatosis http://purl.obolibrary.org/obo/NCBITaxon_1763 Mycobacterium http://purl.obolibrary.org/obo/NCBITaxon_11039 Western equine encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_177874 WEEV complex http://purl.obolibrary.org/obo/NCBITaxon_37124 Chikungunya virus http://purl.obolibrary.org/obo/NCBITaxon_177875 SFV complex http://purl.obolibrary.org/obo/NCBITaxon_186538 Zaire ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186536 Ebolavirus http://purl.obolibrary.org/obo/NCBITaxon_186802 Clostridiales http://purl.obolibrary.org/obo/NCBITaxon_186801 Clostridia http://purl.obolibrary.org/obo/NCBITaxon_31979 Clostridiaceae http://purl.obolibrary.org/obo/NCBITaxon_186802 Clostridiales http://purl.obolibrary.org/obo/NCBITaxon_1386 Bacillus http://purl.obolibrary.org/obo/NCBITaxon_186817 Bacillaceae http://purl.obolibrary.org/obo/NCBITaxon_1637 Listeria http://purl.obolibrary.org/obo/NCBITaxon_186820 Listeriaceae http://purl.obolibrary.org/obo/NCBITaxon_1300 Streptococcaceae http://purl.obolibrary.org/obo/NCBITaxon_186826 Lactobacillales http://purl.obolibrary.org/obo/NCBITaxon_6960 Hexapoda http://purl.obolibrary.org/obo/NCBITaxon_197562 Pancrustacea http://purl.obolibrary.org/obo/NCBITaxon_197562 Pancrustacea http://purl.obolibrary.org/obo/NCBITaxon_197563 Mandibulata http://purl.obolibrary.org/obo/NCBITaxon_203692 Spirochaetia http://purl.obolibrary.org/obo/NCBITaxon_203691 Spirochaetes http://purl.obolibrary.org/obo/NCBITaxon_136 Spirochaetales http://purl.obolibrary.org/obo/NCBITaxon_203692 Spirochaetia http://purl.obolibrary.org/obo/NCBITaxon_1643688 Leptospirales http://purl.obolibrary.org/obo/NCBITaxon_203692 Spirochaetia http://purl.obolibrary.org/obo/NCBITaxon_51291 Chlamydiales http://purl.obolibrary.org/obo/NCBITaxon_204429 Chlamydiia http://purl.obolibrary.org/obo/NCBITaxon_481 Neisseriaceae http://purl.obolibrary.org/obo/NCBITaxon_206351 Neisseriales http://purl.obolibrary.org/obo/NCBITaxon_72294 Campylobacteraceae http://purl.obolibrary.org/obo/NCBITaxon_213849 Campylobacterales http://purl.obolibrary.org/obo/NCBITaxon_235 Brucella abortus http://purl.obolibrary.org/obo/NCBITaxon_234 Brucella http://purl.obolibrary.org/obo/NCBITaxon_29459 Brucella melitensis http://purl.obolibrary.org/obo/NCBITaxon_234 Brucella http://purl.obolibrary.org/obo/NCBITaxon_29461 Brucella suis http://purl.obolibrary.org/obo/NCBITaxon_234 Brucella http://purl.obolibrary.org/obo/NCBITaxon_36855 Brucella canis http://purl.obolibrary.org/obo/NCBITaxon_234 Brucella http://purl.obolibrary.org/obo/NCBITaxon_263 Francisella tularensis http://purl.obolibrary.org/obo/NCBITaxon_262 Francisella http://purl.obolibrary.org/obo/NCBITaxon_207245 Fornicata http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_33090 Viridiplantae http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_554915 Amoebozoa http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_9903 Bos http://purl.obolibrary.org/obo/NCBITaxon_27592 Bovinae http://purl.obolibrary.org/obo/NCBITaxon_356 Rhizobiales http://purl.obolibrary.org/obo/NCBITaxon_28211 Alphaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_766 Rickettsiales http://purl.obolibrary.org/obo/NCBITaxon_28211 Alphaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_206351 Neisseriales http://purl.obolibrary.org/obo/NCBITaxon_28216 Betaproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_1678141 Orthohepevirus http://purl.obolibrary.org/obo/NCBITaxon_291484 Hepeviridae http://purl.obolibrary.org/obo/NCBITaxon_11083 Powassan virus http://purl.obolibrary.org/obo/NCBITaxon_29263 tick-borne encephalitis virus group http://purl.obolibrary.org/obo/NCBITaxon_213849 Campylobacterales http://purl.obolibrary.org/obo/NCBITaxon_29547 Epsilonproteobacteria http://purl.obolibrary.org/obo/NCBITaxon_91561 Cetartiodactyla http://purl.obolibrary.org/obo/NCBITaxon_314145 Laurasiatheria http://purl.obolibrary.org/obo/NCBITaxon_33554 Carnivora http://purl.obolibrary.org/obo/NCBITaxon_314145 Laurasiatheria http://purl.obolibrary.org/obo/NCBITaxon_9787 Perissodactyla http://purl.obolibrary.org/obo/NCBITaxon_314145 Laurasiatheria http://purl.obolibrary.org/obo/NCBITaxon_1485 Clostridium http://purl.obolibrary.org/obo/NCBITaxon_31979 Clostridiaceae http://purl.obolibrary.org/obo/NCBITaxon_111527 pseudomallei group http://purl.obolibrary.org/obo/NCBITaxon_32008 Burkholderia http://purl.obolibrary.org/obo/NCBITaxon_8457 Sauropsida http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota http://purl.obolibrary.org/obo/NCBITaxon_1329799 Archelosauria http://purl.obolibrary.org/obo/NCBITaxon_32561 Sauria http://purl.obolibrary.org/obo/NCBITaxon_35493 Streptophyta http://purl.obolibrary.org/obo/NCBITaxon_33090 Viridiplantae http://purl.obolibrary.org/obo/NCBITaxon_4751 Fungi http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_33208 Metazoa http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_1593277 Onygenales incertae sedis http://purl.obolibrary.org/obo/NCBITaxon_33183 Onygenales http://purl.obolibrary.org/obo/NCBITaxon_6072 Eumetazoa http://purl.obolibrary.org/obo/NCBITaxon_33208 Metazoa http://purl.obolibrary.org/obo/NCBITaxon_33317 Protostomia http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria http://purl.obolibrary.org/obo/NCBITaxon_1206794 Ecdysozoa http://purl.obolibrary.org/obo/NCBITaxon_33317 Protostomia http://purl.obolibrary.org/obo/NCBITaxon_33392 Endopterygota http://purl.obolibrary.org/obo/NCBITaxon_33340 Neoptera http://purl.obolibrary.org/obo/NCBITaxon_7147 Diptera http://purl.obolibrary.org/obo/NCBITaxon_33392 Endopterygota http://purl.obolibrary.org/obo/NCBITaxon_780 Rickettsia http://purl.obolibrary.org/obo/NCBITaxon_33988 Rickettsieae http://purl.obolibrary.org/obo/NCBITaxon_262 Francisella http://purl.obolibrary.org/obo/NCBITaxon_34064 Francisellaceae http://purl.obolibrary.org/obo/NCBITaxon_10240 Poxviridae http://purl.obolibrary.org/obo/NCBITaxon_35237 dsDNA viruses, no RNA stage http://purl.obolibrary.org/obo/NCBITaxon_548681 Herpesvirales http://purl.obolibrary.org/obo/NCBITaxon_35237 dsDNA viruses, no RNA stage http://purl.obolibrary.org/obo/NCBITaxon_10404 Hepadnaviridae http://purl.obolibrary.org/obo/NCBITaxon_35268 Retro-transcribing viruses http://purl.obolibrary.org/obo/NCBITaxon_11632 Retroviridae http://purl.obolibrary.org/obo/NCBITaxon_35268 Retro-transcribing viruses http://purl.obolibrary.org/obo/NCBITaxon_11974 Caliciviridae http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_11018 Togaviridae http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_11050 Flaviviridae http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_291484 Hepeviridae http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_464095 Picornavirales http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_76804 Nidovirales http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_11157 Mononegavirales http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_11308 Orthomyxoviridae http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_11571 Bunyaviridae http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_11617 Arenaviridae http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_1980410 Bunyavirales http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_10880 Reoviridae http://purl.obolibrary.org/obo/NCBITaxon_35325 dsRNA viruses http://purl.obolibrary.org/obo/NCBITaxon_131221 Streptophytina http://purl.obolibrary.org/obo/NCBITaxon_35493 Streptophyta http://purl.obolibrary.org/obo/NCBITaxon_9895 Bovidae http://purl.obolibrary.org/obo/NCBITaxon_35500 Pecora http://purl.obolibrary.org/obo/NCBITaxon_118882 Brucellaceae http://purl.obolibrary.org/obo/NCBITaxon_356 Rhizobiales http://purl.obolibrary.org/obo/NCBITaxon_11161 Mumps virus http://purl.obolibrary.org/obo/NCBITaxon_39744 Rubulavirus http://purl.obolibrary.org/obo/NCBITaxon_11089 Yellow fever virus http://purl.obolibrary.org/obo/NCBITaxon_40005 Yellow fever virus group http://purl.obolibrary.org/obo/NCBITaxon_32525 Theria http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/NCBITaxon_5858 Plasmodium malariae http://purl.obolibrary.org/obo/NCBITaxon_418103 Plasmodium (Plasmodium) http://purl.obolibrary.org/obo/NCBITaxon_5799 Eimeriidae http://purl.obolibrary.org/obo/NCBITaxon_423054 Eimeriorina http://purl.obolibrary.org/obo/NCBITaxon_35082 Cryptosporidiidae http://purl.obolibrary.org/obo/NCBITaxon_423054 Eimeriorina http://purl.obolibrary.org/obo/NCBITaxon_436489 Saurischia http://purl.obolibrary.org/obo/NCBITaxon_436486 Dinosauria http://purl.obolibrary.org/obo/NCBITaxon_436491 Theropoda http://purl.obolibrary.org/obo/NCBITaxon_436489 Saurischia http://purl.obolibrary.org/obo/NCBITaxon_436492 Coelurosauria http://purl.obolibrary.org/obo/NCBITaxon_436491 Theropoda http://purl.obolibrary.org/obo/NCBITaxon_8782 Aves http://purl.obolibrary.org/obo/NCBITaxon_436492 Coelurosauria http://purl.obolibrary.org/obo/NCBITaxon_41827 Culicoidea http://purl.obolibrary.org/obo/NCBITaxon_43786 Culicomorpha http://purl.obolibrary.org/obo/NCBITaxon_7164 Anopheles http://purl.obolibrary.org/obo/NCBITaxon_43816 Anophelinae http://purl.obolibrary.org/obo/NCBITaxon_1056966 Aedini http://purl.obolibrary.org/obo/NCBITaxon_43817 Culicinae http://purl.obolibrary.org/obo/NCBITaxon_53550 Culicini http://purl.obolibrary.org/obo/NCBITaxon_43817 Culicinae http://purl.obolibrary.org/obo/NCBITaxon_35278 ssRNA positive-strand viruses, no DNA stage http://purl.obolibrary.org/obo/NCBITaxon_439488 ssRNA virus http://purl.obolibrary.org/obo/NCBITaxon_35301 ssRNA negative-strand virus http://purl.obolibrary.org/obo/NCBITaxon_439488 ssRNA virus http://purl.obolibrary.org/obo/NCBITaxon_445 Legionella http://purl.obolibrary.org/obo/NCBITaxon_444 Legionellaceae http://purl.obolibrary.org/obo/NCBITaxon_4890 Ascomycota http://purl.obolibrary.org/obo/NCBITaxon_451864 Dikarya http://purl.obolibrary.org/obo/NCBITaxon_33183 Onygenales http://purl.obolibrary.org/obo/NCBITaxon_451871 Eurotiomycetidae http://purl.obolibrary.org/obo/NCBITaxon_12058 Picornaviridae http://purl.obolibrary.org/obo/NCBITaxon_464095 Picornavirales http://purl.obolibrary.org/obo/NCBITaxon_4892 Saccharomycetales http://purl.obolibrary.org/obo/NCBITaxon_4891 Saccharomycetes http://purl.obolibrary.org/obo/NCBITaxon_27319 Metschnikowiaceae http://purl.obolibrary.org/obo/NCBITaxon_4892 Saccharomycetales http://purl.obolibrary.org/obo/NCBITaxon_85512 Dicondylia http://purl.obolibrary.org/obo/NCBITaxon_50557 Insecta http://purl.obolibrary.org/obo/NCBITaxon_517 Bordetella http://purl.obolibrary.org/obo/NCBITaxon_506 Alcaligenaceae http://purl.obolibrary.org/obo/NCBITaxon_809 Chlamydiaceae http://purl.obolibrary.org/obo/NCBITaxon_51291 Chlamydiales http://purl.obolibrary.org/obo/NCBITaxon_518105 Culex pipiens complex http://purl.obolibrary.org/obo/NCBITaxon_53527 Culex http://purl.obolibrary.org/obo/NCBITaxon_7174 Culex http://purl.obolibrary.org/obo/NCBITaxon_53550 Culicini http://purl.obolibrary.org/obo/NCBITaxon_561 Escherichia http://purl.obolibrary.org/obo/NCBITaxon_543 Enterobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_570 Klebsiella http://purl.obolibrary.org/obo/NCBITaxon_543 Enterobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_620 Shigella http://purl.obolibrary.org/obo/NCBITaxon_543 Enterobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_590 Salmonella http://purl.obolibrary.org/obo/NCBITaxon_543 Enterobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_10292 Herpesviridae http://purl.obolibrary.org/obo/NCBITaxon_548681 Herpesvirales http://purl.obolibrary.org/obo/NCBITaxon_199306 Coccidioides posadasii http://purl.obolibrary.org/obo/NCBITaxon_5500 Coccidioides http://purl.obolibrary.org/obo/NCBITaxon_5501 Coccidioides immitis http://purl.obolibrary.org/obo/NCBITaxon_5500 Coccidioides http://purl.obolibrary.org/obo/NCBITaxon_5654 Trypanosomatidae http://purl.obolibrary.org/obo/NCBITaxon_5653 Kinetoplastida http://purl.obolibrary.org/obo/NCBITaxon_5690 Trypanosoma http://purl.obolibrary.org/obo/NCBITaxon_5654 Trypanosomatidae http://purl.obolibrary.org/obo/NCBITaxon_39824 Klebsiella granulomatis http://purl.obolibrary.org/obo/NCBITaxon_570 Klebsiella http://purl.obolibrary.org/obo/NCBITaxon_1280412 Conoidasida http://purl.obolibrary.org/obo/NCBITaxon_5794 Apicomplexa http://purl.obolibrary.org/obo/NCBITaxon_75739 Eucoccidiorida http://purl.obolibrary.org/obo/NCBITaxon_5796 Coccidia http://purl.obolibrary.org/obo/NCBITaxon_1639119 Plasmodiidae http://purl.obolibrary.org/obo/NCBITaxon_5819 Haemosporida http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria http://purl.obolibrary.org/obo/NCBITaxon_6072 Eumetazoa http://purl.obolibrary.org/obo/NCBITaxon_6178 Trematoda http://purl.obolibrary.org/obo/NCBITaxon_6157 Platyhelminthes http://purl.obolibrary.org/obo/NCBITaxon_622 Shigella dysenteriae http://purl.obolibrary.org/obo/NCBITaxon_620 Shigella http://purl.obolibrary.org/obo/NCBITaxon_623 Shigella flexneri http://purl.obolibrary.org/obo/NCBITaxon_620 Shigella http://purl.obolibrary.org/obo/NCBITaxon_624 Shigella sonnei http://purl.obolibrary.org/obo/NCBITaxon_620 Shigella http://purl.obolibrary.org/obo/NCBITaxon_119088 Enoplea http://purl.obolibrary.org/obo/NCBITaxon_6231 Nematoda http://purl.obolibrary.org/obo/NCBITaxon_119089 Chromadorea http://purl.obolibrary.org/obo/NCBITaxon_6231 Nematoda http://purl.obolibrary.org/obo/NCBITaxon_1649845 Yersinia pseudotuberculosis complex http://purl.obolibrary.org/obo/NCBITaxon_629 Yersinia http://purl.obolibrary.org/obo/NCBITaxon_630 Yersinia enterocolitica http://purl.obolibrary.org/obo/NCBITaxon_629 Yersinia http://purl.obolibrary.org/obo/NCBITaxon_6332 Trichinellidae http://purl.obolibrary.org/obo/NCBITaxon_6329 Trichocephalida http://purl.obolibrary.org/obo/NCBITaxon_197563 Mandibulata http://purl.obolibrary.org/obo/NCBITaxon_6656 Arthropoda http://purl.obolibrary.org/obo/NCBITaxon_6843 Chelicerata http://purl.obolibrary.org/obo/NCBITaxon_6656 Arthropoda http://purl.obolibrary.org/obo/NCBITaxon_6854 Arachnida http://purl.obolibrary.org/obo/NCBITaxon_6843 Chelicerata http://purl.obolibrary.org/obo/NCBITaxon_6933 Acari http://purl.obolibrary.org/obo/NCBITaxon_6854 Arachnida http://purl.obolibrary.org/obo/NCBITaxon_6946 Acariformes http://purl.obolibrary.org/obo/NCBITaxon_6933 Acari http://purl.obolibrary.org/obo/NCBITaxon_694002 Betacoronavirus http://purl.obolibrary.org/obo/NCBITaxon_693995 Coronavirinae http://purl.obolibrary.org/obo/NCBITaxon_227859 SARS coronavirus http://purl.obolibrary.org/obo/NCBITaxon_694002 Betacoronavirus http://purl.obolibrary.org/obo/NCBITaxon_1335626 Middle East respiratory syndrome coronavirus http://purl.obolibrary.org/obo/NCBITaxon_694002 Betacoronavirus http://purl.obolibrary.org/obo/NCBITaxon_83137 Sarcoptiformes http://purl.obolibrary.org/obo/NCBITaxon_6946 Acariformes http://purl.obolibrary.org/obo/NCBITaxon_50557 Insecta http://purl.obolibrary.org/obo/NCBITaxon_6960 Hexapoda http://purl.obolibrary.org/obo/NCBITaxon_724 Haemophilus http://purl.obolibrary.org/obo/NCBITaxon_712 Pasteurellaceae http://purl.obolibrary.org/obo/NCBITaxon_7148 Nematocera http://purl.obolibrary.org/obo/NCBITaxon_7147 Diptera http://purl.obolibrary.org/obo/NCBITaxon_43786 Culicomorpha http://purl.obolibrary.org/obo/NCBITaxon_7148 Nematocera http://purl.obolibrary.org/obo/NCBITaxon_43816 Anophelinae http://purl.obolibrary.org/obo/NCBITaxon_7157 Culicidae http://purl.obolibrary.org/obo/NCBITaxon_43817 Culicinae http://purl.obolibrary.org/obo/NCBITaxon_7157 Culicidae http://purl.obolibrary.org/obo/NCBITaxon_147537 Saccharomycotina http://purl.obolibrary.org/obo/NCBITaxon_716545 saccharomyceta http://purl.obolibrary.org/obo/NCBITaxon_147538 Pezizomycotina http://purl.obolibrary.org/obo/NCBITaxon_716545 saccharomyceta http://purl.obolibrary.org/obo/NCBITaxon_147545 Eurotiomycetes http://purl.obolibrary.org/obo/NCBITaxon_716546 leotiomyceta http://purl.obolibrary.org/obo/NCBITaxon_34064 Francisellaceae http://purl.obolibrary.org/obo/NCBITaxon_72273 Thiotrichales http://purl.obolibrary.org/obo/NCBITaxon_194 Campylobacter http://purl.obolibrary.org/obo/NCBITaxon_72294 Campylobacteraceae http://purl.obolibrary.org/obo/NCBITaxon_730 [Haemophilus] ducreyi http://purl.obolibrary.org/obo/NCBITaxon_724 Haemophilus http://purl.obolibrary.org/obo/NCBITaxon_33340 Neoptera http://purl.obolibrary.org/obo/NCBITaxon_7496 Pterygota http://purl.obolibrary.org/obo/NCBITaxon_423054 Eimeriorina http://purl.obolibrary.org/obo/NCBITaxon_75739 Eucoccidiorida http://purl.obolibrary.org/obo/NCBITaxon_775 Rickettsiaceae http://purl.obolibrary.org/obo/NCBITaxon_766 Rickettsiales http://purl.obolibrary.org/obo/NCBITaxon_942 Anaplasmataceae http://purl.obolibrary.org/obo/NCBITaxon_766 Rickettsiales http://purl.obolibrary.org/obo/NCBITaxon_106179 phagocytophilum group http://purl.obolibrary.org/obo/NCBITaxon_768 Anaplasma http://purl.obolibrary.org/obo/NCBITaxon_11118 Coronaviridae http://purl.obolibrary.org/obo/NCBITaxon_76804 Nidovirales http://purl.obolibrary.org/obo/NCBITaxon_89593 Craniata http://purl.obolibrary.org/obo/NCBITaxon_7711 Chordata http://purl.obolibrary.org/obo/NCBITaxon_33988 Rickettsieae http://purl.obolibrary.org/obo/NCBITaxon_775 Rickettsiaceae http://purl.obolibrary.org/obo/NCBITaxon_777 Coxiella burnetii http://purl.obolibrary.org/obo/NCBITaxon_776 Coxiella http://purl.obolibrary.org/obo/NCBITaxon_117570 Teleostomi http://purl.obolibrary.org/obo/NCBITaxon_7776 Gnathostomata http://purl.obolibrary.org/obo/NCBITaxon_119060 Burkholderiaceae http://purl.obolibrary.org/obo/NCBITaxon_80840 Burkholderiales http://purl.obolibrary.org/obo/NCBITaxon_506 Alcaligenaceae http://purl.obolibrary.org/obo/NCBITaxon_80840 Burkholderiales http://purl.obolibrary.org/obo/NCBITaxon_1113537 Chlamydia/Chlamydophila group http://purl.obolibrary.org/obo/NCBITaxon_809 Chlamydiaceae http://purl.obolibrary.org/obo/NCBITaxon_83554 Chlamydia psittaci http://purl.obolibrary.org/obo/NCBITaxon_810 Chlamydia http://purl.obolibrary.org/obo/NCBITaxon_1338369 Dipnotetrapodomorpha http://purl.obolibrary.org/obo/NCBITaxon_8287 Sarcopterygii http://purl.obolibrary.org/obo/NCBITaxon_32561 Sauria http://purl.obolibrary.org/obo/NCBITaxon_8457 Sauropsida http://purl.obolibrary.org/obo/NCBITaxon_436486 Dinosauria http://purl.obolibrary.org/obo/NCBITaxon_8492 Archosauria http://purl.obolibrary.org/obo/NCBITaxon_1653 Corynebacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_85007 Corynebacteriales http://purl.obolibrary.org/obo/NCBITaxon_1762 Mycobacteriaceae http://purl.obolibrary.org/obo/NCBITaxon_85007 Corynebacteriales http://purl.obolibrary.org/obo/NCBITaxon_7496 Pterygota http://purl.obolibrary.org/obo/NCBITaxon_85512 Dicondylia http://purl.obolibrary.org/obo/NCBITaxon_8825 Neognathae http://purl.obolibrary.org/obo/NCBITaxon_8782 Aves http://purl.obolibrary.org/obo/NCBITaxon_1549675 Galloanserae http://purl.obolibrary.org/obo/NCBITaxon_8825 Neognathae http://purl.obolibrary.org/obo/NCBITaxon_6656 Arthropoda http://purl.obolibrary.org/obo/NCBITaxon_88770 Panarthropoda http://purl.obolibrary.org/obo/NCBITaxon_9005 Phasianidae http://purl.obolibrary.org/obo/NCBITaxon_8976 Galliformes http://purl.obolibrary.org/obo/NCBITaxon_466544 Perdicinae http://purl.obolibrary.org/obo/NCBITaxon_9005 Phasianidae http://purl.obolibrary.org/obo/NCBITaxon_9072 Phasianinae http://purl.obolibrary.org/obo/NCBITaxon_9005 Phasianidae http://purl.obolibrary.org/obo/NCBITaxon_466552 Meleagridinae http://purl.obolibrary.org/obo/NCBITaxon_9005 Phasianidae http://purl.obolibrary.org/obo/NCBITaxon_9031 Gallus gallus http://purl.obolibrary.org/obo/NCBITaxon_9030 Gallus http://purl.obolibrary.org/obo/NCBITaxon_9030 Gallus http://purl.obolibrary.org/obo/NCBITaxon_9072 Phasianinae http://purl.obolibrary.org/obo/NCBITaxon_1385 Bacillales http://purl.obolibrary.org/obo/NCBITaxon_91061 Bacilli http://purl.obolibrary.org/obo/NCBITaxon_186826 Lactobacillales http://purl.obolibrary.org/obo/NCBITaxon_91061 Bacilli http://purl.obolibrary.org/obo/NCBITaxon_1903411 Yersiniaceae http://purl.obolibrary.org/obo/NCBITaxon_91347 Enterobacterales http://purl.obolibrary.org/obo/NCBITaxon_9845 Ruminantia http://purl.obolibrary.org/obo/NCBITaxon_91561 Cetartiodactyla http://purl.obolibrary.org/obo/NCBITaxon_35497 Suina http://purl.obolibrary.org/obo/NCBITaxon_91561 Cetartiodactyla http://purl.obolibrary.org/obo/NCBITaxon_1437010 Boreoeutheria http://purl.obolibrary.org/obo/NCBITaxon_9347 Eutheria http://purl.obolibrary.org/obo/NCBITaxon_768 Anaplasma http://purl.obolibrary.org/obo/NCBITaxon_942 Anaplasmataceae http://purl.obolibrary.org/obo/NCBITaxon_943 Ehrlichia http://purl.obolibrary.org/obo/NCBITaxon_942 Anaplasmataceae http://purl.obolibrary.org/obo/NCBITaxon_106178 canis group http://purl.obolibrary.org/obo/NCBITaxon_943 Ehrlichia http://purl.obolibrary.org/obo/NCBITaxon_35500 Pecora http://purl.obolibrary.org/obo/NCBITaxon_9845 Ruminantia http://purl.obolibrary.org/obo/NCBITaxon_27592 Bovinae http://purl.obolibrary.org/obo/NCBITaxon_9895 Bovidae http://purl.obolibrary.org/obo/NCBITaxon_9963 Caprinae http://purl.obolibrary.org/obo/NCBITaxon_9895 Bovidae http://purl.obolibrary.org/obo/NCBITaxon_9913 Bos taurus http://purl.obolibrary.org/obo/NCBITaxon_9903 Bos http://purl.obolibrary.org/obo/NCBITaxon_9925 Capra hircus http://purl.obolibrary.org/obo/NCBITaxon_9922 Capra http://purl.obolibrary.org/obo/NCBITaxon_9922 Capra http://purl.obolibrary.org/obo/NCBITaxon_9963 Caprinae http://purl.obolibrary.org/obo/NCBITaxon_9935 Ovis http://purl.obolibrary.org/obo/NCBITaxon_9963 Caprinae http://purl.obolibrary.org/obo/APOLLO_SV_00000293 individual treatment strategy administration capacity unit of measure http://purl.obolibrary.org/obo/UO_0000000 unit http://purl.obolibrary.org/obo/APOLLO_SV_00000158 population demographic survey http://purl.obolibrary.org/obo/APOLLO_SV_00000152 population survey http://purl.obolibrary.org/obo/APOLLO_SV_00000056 hospital patient population census http://purl.obolibrary.org/obo/APOLLO_SV_00000153 population census http://purl.obolibrary.org/obo/APOLLO_SV_00000176 school student population census http://purl.obolibrary.org/obo/APOLLO_SV_00000153 population census http://purl.obolibrary.org/obo/APOLLO_SV_00000027 school facility census http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census http://purl.obolibrary.org/obo/APOLLO_SV_00000163 recovered population http://purl.obolibrary.org/obo/APOLLO_SV_00000516 host population http://purl.obolibrary.org/obo/GEO_000000373 body of water http://purl.obolibrary.org/obo/GEO_000000372 geographical region http://purl.obolibrary.org/obo/GEO_000000375 land mass http://purl.obolibrary.org/obo/GEO_000000372 geographical region http://purl.obolibrary.org/obo/GEO_000000392 private governance organization http://purl.obolibrary.org/obo/GEO_000000391 geopoli organization http://purl.obolibrary.org/obo/geo.owl/GEO_000000399 supranational entity http://purl.obolibrary.org/obo/GEO_000000400 governmental organization http://purl.obolibrary.org/obo/NCBITaxon_54736 Salmonella bongori http://purl.obolibrary.org/obo/NCBITaxon_590 Salmonella http://purl.obolibrary.org/obo/GEO_000000376 island http://purl.obolibrary.org/obo/GEO_000000334 subcontinental land mass http://purl.obolibrary.org/obo/GEO_000000390 aggregate of islands http://purl.obolibrary.org/obo/GEO_000000369 aggregate of contiguous land masses http://purl.obolibrary.org/obo/APOLLO_SV_00000110 atmosphere of geographical region http://purl.obolibrary.org/obo/GEO_000000371 geographical feature http://purl.obolibrary.org/obo/GEO_000000334 subcontinental land mass http://purl.obolibrary.org/obo/GEO_000000375 land mass http://purl.obolibrary.org/obo/GEO_000000369 aggregate of contiguous land masses http://purl.obolibrary.org/obo/GEO_000000377 aggregate of geographical entities http://purl.obolibrary.org/obo/GEO_000000374 continent http://purl.obolibrary.org/obo/GEO_000000375 land mass http://purl.obolibrary.org/obo/GEO_000000378 aggregate of geographical features http://purl.obolibrary.org/obo/GEO_000000377 aggregate of geographical entities http://purl.obolibrary.org/obo/APOLLO_SV_00000252 discrete nonparametric probability distribution http://purl.obolibrary.org/obo/STATO_0000321 non-parametric distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000253 continuous nonparametric probability distribution http://purl.obolibrary.org/obo/STATO_0000321 non-parametric distribution http://purl.obolibrary.org/obo/NCBITaxon_9940 Ovis aries http://purl.obolibrary.org/obo/NCBITaxon_9935 Ovis http://purl.obolibrary.org/obo/NCBITaxon_161 Treponema pallidum subsp. pallidum http://purl.obolibrary.org/obo/NCBITaxon_160 Treponema pallidum http://purl.obolibrary.org/obo/NCBITaxon_6185 Schistosoma haematobium http://purl.obolibrary.org/obo/NCBITaxon_6181 Schistosoma http://purl.obolibrary.org/obo/NCBITaxon_6183 Schistosoma mansoni http://purl.obolibrary.org/obo/NCBITaxon_6181 Schistosoma http://purl.obolibrary.org/obo/NCBITaxon_1540022 Clavispora/Candida clade http://purl.obolibrary.org/obo/NCBITaxon_36910 Clavispora http://purl.obolibrary.org/obo/NCBITaxon_52283 Sarcoptes scabiei http://purl.obolibrary.org/obo/NCBITaxon_52282 Sarcoptes http://purl.obolibrary.org/obo/NCBITaxon_31244 Schistosomatoidea http://purl.obolibrary.org/obo/NCBITaxon_6180 Strigeidida http://purl.obolibrary.org/obo/NCBITaxon_6951 Astigmata http://purl.obolibrary.org/obo/NCBITaxon_83137 Sarcoptiformes http://purl.obolibrary.org/obo/OMRSE_00000055 school role http://purl.obolibrary.org/obo/OMRSE_00000025 organization social role http://purl.obolibrary.org/obo/OMRSE_00000059 nursery school role http://purl.obolibrary.org/obo/OMRSE_00000055 school role http://purl.obolibrary.org/obo/OMRSE_00000060 primary school role http://purl.obolibrary.org/obo/OMRSE_00000055 school role http://purl.obolibrary.org/obo/OMRSE_00000065 secondary school role http://purl.obolibrary.org/obo/OMRSE_00000055 school role http://purl.obolibrary.org/obo/APOLLO_SV_00000126 control strategy target facilities http://purl.obolibrary.org/obo/OMRSE_00000062 facility http://purl.obolibrary.org/obo/NCBITaxon_629 Yersinia http://purl.obolibrary.org/obo/NCBITaxon_1903411 Yersiniaceae http://purl.obolibrary.org/obo/NCBITaxon_80941 Guaroa virus http://purl.obolibrary.org/obo/NCBITaxon_1933274 Guaroa orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_1980415 Nairoviridae http://purl.obolibrary.org/obo/NCBITaxon_1980410 Bunyavirales http://purl.obolibrary.org/obo/NCBITaxon_1980416 Peribunyaviridae http://purl.obolibrary.org/obo/NCBITaxon_1980410 Bunyavirales http://purl.obolibrary.org/obo/NCBITaxon_1980517 Orthonairovirus http://purl.obolibrary.org/obo/NCBITaxon_1980415 Nairoviridae http://purl.obolibrary.org/obo/NCBITaxon_131567 cellular organisms http://purl.obolibrary.org/obo/COB_0000022 organism http://purl.obolibrary.org/obo/NCBITaxon_5739 Hexamitidae http://purl.obolibrary.org/obo/NCBITaxon_5738 Diplomonadida http://purl.obolibrary.org/obo/NCBITaxon_11021 Eastern equine encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_177873 EEEV complex http://purl.obolibrary.org/obo/NCBITaxon_1045010 Escherichia coli O157 http://purl.obolibrary.org/obo/NCBITaxon_562 Escherichia coli http://purl.obolibrary.org/obo/NCBITaxon_498019 Candida auris http://purl.obolibrary.org/obo/NCBITaxon_1540022 Clavispora/Candida clade http://purl.obolibrary.org/obo/NCBITaxon_44417 Cyclospora http://purl.obolibrary.org/obo/NCBITaxon_5799 Eimeriidae http://purl.obolibrary.org/obo/NCBITaxon_5500 Coccidioides http://purl.obolibrary.org/obo/NCBITaxon_1593277 Onygenales incertae sedis http://purl.obolibrary.org/obo/NCBITaxon_121791 Nipah henipavirus http://purl.obolibrary.org/obo/NCBITaxon_260964 Henipavirus http://purl.obolibrary.org/obo/NCBITaxon_88456 Cyclospora cayetanensis http://purl.obolibrary.org/obo/NCBITaxon_44417 Cyclospora http://purl.obolibrary.org/obo/NCBITaxon_33277 Ancylostomatoidea http://purl.obolibrary.org/obo/NCBITaxon_6308 Strongylida http://purl.obolibrary.org/obo/NCBITaxon_12461 Hepatitis E virus http://purl.obolibrary.org/obo/NCBITaxon_1678143 Orthohepevirus A http://purl.obolibrary.org/obo/NCBITaxon_52282 Sarcoptes http://purl.obolibrary.org/obo/NCBITaxon_474019 Sarcoptinae http://purl.obolibrary.org/obo/NCBITaxon_641 Vibrionaceae http://purl.obolibrary.org/obo/NCBITaxon_135623 Vibrionales http://purl.obolibrary.org/obo/NCBITaxon_5741 Giardia intestinalis http://purl.obolibrary.org/obo/NCBITaxon_5740 Giardia http://purl.obolibrary.org/obo/NCBITaxon_45882 Trichinella britovi http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_144512 Trichinella murrelli http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_6334 Trichinella spiralis http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_6335 Trichinella nativa http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_6336 Trichinella nelsoni http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_29170 Ancylostoma caninum http://purl.obolibrary.org/obo/NCBITaxon_29169 Ancylostoma http://purl.obolibrary.org/obo/NCBITaxon_51022 Ancylostoma duodenale http://purl.obolibrary.org/obo/NCBITaxon_29169 Ancylostoma http://purl.obolibrary.org/obo/NCBITaxon_1678143 Orthohepevirus A http://purl.obolibrary.org/obo/NCBITaxon_1678141 Orthohepevirus http://purl.obolibrary.org/obo/NCBITaxon_33084 Entamoebidae http://purl.obolibrary.org/obo/NCBITaxon_555406 Archamoebae http://purl.obolibrary.org/obo/NCBITaxon_223472 Psoroptidia http://purl.obolibrary.org/obo/NCBITaxon_6951 Astigmata http://purl.obolibrary.org/obo/NCBITaxon_52281 Sarcoptidae http://purl.obolibrary.org/obo/NCBITaxon_83158 Sarcoptoidea http://purl.obolibrary.org/obo/NCBITaxon_5806 Cryptosporidium http://purl.obolibrary.org/obo/NCBITaxon_35082 Cryptosporidiidae http://purl.obolibrary.org/obo/NCBITaxon_5740 Giardia http://purl.obolibrary.org/obo/NCBITaxon_68459 Giardiinae http://purl.obolibrary.org/obo/NCBITaxon_9102 Meleagris http://purl.obolibrary.org/obo/NCBITaxon_466552 Meleagridinae http://purl.obolibrary.org/obo/NCBITaxon_474019 Sarcoptinae http://purl.obolibrary.org/obo/NCBITaxon_52281 Sarcoptidae http://purl.obolibrary.org/obo/NCBITaxon_6333 Trichinella http://purl.obolibrary.org/obo/NCBITaxon_6332 Trichinellidae http://purl.obolibrary.org/obo/NCBITaxon_9103 Meleagris gallopavo http://purl.obolibrary.org/obo/NCBITaxon_9102 Meleagris http://purl.obolibrary.org/obo/NCBITaxon_555406 Archamoebae http://purl.obolibrary.org/obo/NCBITaxon_554915 Amoebozoa http://purl.obolibrary.org/obo/APOLLO_SV_00000606 vaccination control strategy census http://purl.obolibrary.org/obo/APOLLO_SV_00000604 control strategy census http://purl.obolibrary.org/obo/APOLLO_SV_00000018 count of simulated susceptible population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count http://purl.obolibrary.org/obo/APOLLO_SV_00000019 count of simulated exposed population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count http://purl.obolibrary.org/obo/APOLLO_SV_00000020 count of simulated contagious population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count http://purl.obolibrary.org/obo/APOLLO_SV_00000021 count of simulated resistant population http://purl.obolibrary.org/obo/APOLLO_SV_00000617 population count http://purl.obolibrary.org/obo/IAO_8000016 taxonomic bridge ontology module http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000020 EL++ ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/NCBITaxon_9526 Catarrhini http://purl.obolibrary.org/obo/NCBITaxon_314293 Simiiformes http://purl.obolibrary.org/obo/NCBITaxon_379584 Caniformia http://purl.obolibrary.org/obo/NCBITaxon_33554 Carnivora http://purl.obolibrary.org/obo/NCBITaxon_9821 Suidae http://purl.obolibrary.org/obo/NCBITaxon_35497 Suina http://purl.obolibrary.org/obo/NCBITaxon_9608 Canidae http://purl.obolibrary.org/obo/NCBITaxon_379584 Caniformia http://purl.obolibrary.org/obo/NCBITaxon_6308 Strongylida http://purl.obolibrary.org/obo/NCBITaxon_6236 Rhabditida http://purl.obolibrary.org/obo/NCBITaxon_8830 Anatidae http://purl.obolibrary.org/obo/NCBITaxon_8826 Anseriformes http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens http://purl.obolibrary.org/obo/NCBITaxon_9443 Primates http://purl.obolibrary.org/obo/NCBITaxon_376913 Haplorrhini http://purl.obolibrary.org/obo/NCBITaxon_9443 Primates http://purl.obolibrary.org/obo/NCBITaxon_314294 Cercopithecoidea http://purl.obolibrary.org/obo/NCBITaxon_9526 Catarrhini http://purl.obolibrary.org/obo/NCBITaxon_9528 Cercopithecinae http://purl.obolibrary.org/obo/NCBITaxon_9527 Cercopithecidae http://purl.obolibrary.org/obo/NCBITaxon_9541 Macaca fascicularis http://purl.obolibrary.org/obo/NCBITaxon_9539 Macaca http://purl.obolibrary.org/obo/NCBITaxon_9611 Canis http://purl.obolibrary.org/obo/NCBITaxon_9608 Canidae http://purl.obolibrary.org/obo/NCBITaxon_9612 Canis lupus http://purl.obolibrary.org/obo/NCBITaxon_9611 Canis http://purl.obolibrary.org/obo/NCBITaxon_9788 Equidae http://purl.obolibrary.org/obo/NCBITaxon_9787 Perissodactyla http://purl.obolibrary.org/obo/NCBITaxon_9789 Equus http://purl.obolibrary.org/obo/NCBITaxon_9788 Equidae http://purl.obolibrary.org/obo/NCBITaxon_9822 Sus http://purl.obolibrary.org/obo/NCBITaxon_9821 Suidae http://purl.obolibrary.org/obo/NCBITaxon_9823 Sus scrofa http://purl.obolibrary.org/obo/NCBITaxon_9822 Sus http://purl.obolibrary.org/obo/NCBITaxon_45269 Inkoo virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_45270 Tahyna virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_11577 La Crosse virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_35305 California encephalitis virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_11580 Snowshoe hare virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_35511 Jamestown Canyon virus http://purl.obolibrary.org/obo/NCBITaxon_1933264 California encephalitis orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_11572 Orthobunyavirus http://purl.obolibrary.org/obo/NCBITaxon_1980416 Peribunyaviridae http://purl.obolibrary.org/obo/NCBITaxon_1980519 Crimean-Congo hemorrhagic fever orthonairovirus http://purl.obolibrary.org/obo/NCBITaxon_1980517 Orthonairovirus http://purl.obolibrary.org/obo/NCBITaxon_93934 Coturnix japonica http://purl.obolibrary.org/obo/NCBITaxon_9090 Coturnix http://purl.obolibrary.org/obo/NCBITaxon_35510 Equus http://purl.obolibrary.org/obo/NCBITaxon_9789 Equus http://purl.obolibrary.org/obo/APOLLO_SV_00000595 treatment facility census treatment facilities census A census that counts the number of treatment facilities of some kind in a particular geographical region. http://purl.obolibrary.org/obo/APOLLO_SV_00000335 chemical resistance to infection chemotherapeutic resistance to infection A resistance to infection that is conferred by the presence, in sufficient quantity, of a particular molecular entity that is not normally present in the organism. http://purl.obolibrary.org/obo/OMRSE_00000086 human role within an organization human organizational role A human social role that is created by a deontic declaration performed by an organization. http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000002 obsolete specificity of treatment detection The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000001 obsolete specificity of case detection The specificity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X. http://purl.obolibrary.org/obo/apollo_sv/dev/apollo_sv.owl#APOLLO_SV_00000003 obsolete sensitivity of treatment detection The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment http://purl.obolibrary.org/obo/APOLLO_SV_00000011 obsolete control strategy reactive start time information A control strategy start time information item that is based on a condition that triggers the control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000055 epidemic simulating A simulating of a disease epidemic or pandemic. http://purl.obolibrary.org/obo/APOLLO_SV_00000058 simulation of organism not awaiting control measure A simulated organism that is assumed “ineligible, unwilling or unable” to participate with a particular control measure. http://purl.obolibrary.org/obo/APOLLO_SV_00000139 control strategy compliance A measurement datum about the fraction of individuals in a population that elect to participate in a control strategy when offered. http://purl.obolibrary.org/obo/APOLLO_SV_00000161 obsolete MIDAS scenario An ecosystem in which a population of hosts is undergoing at least one infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000192 obsolete vaccination efficacy measured A data item specifying a measured vaccination efficacy. http://purl.obolibrary.org/obo/APOLLO_SV_00000370 obsolete homeostasis A disposition of the whole organism (or of some causally relatively isolated part of the organism, such as a single cell) to regulate its bodily processes in such a way as (1) to maintain bodily qualities within a certain range or profile and (2) to respond successfully to departures from this range caused by internal influences or environmental influences such as poisoning. http://purl.obolibrary.org/obo/APOLLO_SV_00000399 obsolete infection case count A count of individuals in a population who meet an infection case definition during a particular time interval. http://purl.obolibrary.org/obo/APOLLO_SV_00000435 obsolete closure period A one-dimensional temporal region occupied by a place closure control strategy. http://purl.obolibrary.org/obo/APOLLO_SV_00000475 obsolete gonotrophic period duration A time measurement datum of the length of the temporal interval occupied by a gonotropic period. http://purl.obolibrary.org/obo/APOLLO_SV_00000496 obsolete ORCID An identifier curated by ORCID, Inc. to denote some academic author. http://purl.obolibrary.org/obo/APOLLO_SV_00000002 basic reproduction number The average number of transmissions of an infectious agent from an infectious organism to a susceptible organism within a completely susceptible population. http://purl.obolibrary.org/obo/APOLLO_SV_00000022 count of simulated population The count of (simulated organisms) in a simulated population. http://purl.obolibrary.org/obo/APOLLO_SV_00000043 reproduction number The average value of transmissions of the infectious agent from one infected organism to another, resulting in an infection. http://purl.obolibrary.org/obo/APOLLO_SV_00000173 census A data set of a specific entity in a specified region at a specified time. http://purl.obolibrary.org/obo/OMRSE_00000058 student role A human social role that, if realized, is realized by the process of formal education that the bearer undergoes. http://purl.obolibrary.org/obo/APOLLO_SV_00000096 obsolete unit of measure http://purl.obolibrary.org/obo/APOLLO_SV_00000125 obsolete school calendar http://purl.obolibrary.org/obo/APOLLO_SV_00000143 obsolete vaccine disposition http://purl.obolibrary.org/obo/APOLLO_SV_00000146 obsolete beta http://purl.obolibrary.org/obo/APOLLO_SV_00000148 obsolete random number seed http://purl.obolibrary.org/obo/APOLLO_SV_00000198 obsolete agent model ecosystem census description http://purl.obolibrary.org/obo/APOLLO_SV_00000199 obsolete compartment model population and environment census http://purl.obolibrary.org/obo/APOLLO_SV_00000248 obsolete parametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000249 obsolete nonparametric probability distribution http://purl.obolibrary.org/obo/APOLLO_SV_00000297 obsolete quarantine period http://purl.obolibrary.org/obo/APOLLO_SV_00000316 obsolete carrying capacity per house http://purl.obolibrary.org/obo/BFO_0000001 entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/RO_0002234 has output http://purl.obolibrary.org/obo/RO_0000057 has_participant produces p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p. http://purl.obolibrary.org/obo/RO_0000052 characteristic of http://purl.obolibrary.org/obo/RO_0002314 characteristic of part of inheres_in a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. http://purl.obolibrary.org/obo/RO_0000079 function of http://purl.obolibrary.org/obo/RO_0000052 characteristic of is function of a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000080 quality of http://purl.obolibrary.org/obo/RO_0000052 characteristic of quality_of a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000085 has function http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_function a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000086 has quality http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_quality a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002087 immediately_preceded_by http://purl.obolibrary.org/obo/BFO_0000062 preceded by starts_at_end_of X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) http://purl.obolibrary.org/obo/RO_0002350 member of http://purl.obolibrary.org/obo/BFO_0000050 part of member part of is member of is a mereological relation between a item and a collection. http://purl.obolibrary.org/obo/RO_0002218 obsolete has active participant http://purl.obolibrary.org/obo/RO_0000057 has_participant has agent OBSOLETE x has participant y if and only if x realizes some active role that inheres in y http://purl.obolibrary.org/obo/BFO_0000051 has part http://purl.obolibrary.org/obo/RO_0002131 overlaps has_part a core relation that holds between a whole and its part http://purl.obolibrary.org/obo/RO_0000087 has role http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_role a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002327 enables http://purl.obolibrary.org/obo/RO_0002215 capable of is executing c enables p iff c is capable of p and c acts to execute p. http://purl.obolibrary.org/obo/RO_0002409 indirectly negatively regulates http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates indirectly inhibits p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q. http://purl.obolibrary.org/obo/RO_0002436 molecularly interacts with http://purl.obolibrary.org/obo/RO_0002434 interacts with molecularly binds with An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. http://purl.obolibrary.org/obo/RO_0002449 directly negatively regulates activity of http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of directly inhibits The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. http://purl.obolibrary.org/obo/BFO_0000062 preceded by http://purl.obolibrary.org/obo/RO_0002086 ends after preceded_by x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0000081 role of http://purl.obolibrary.org/obo/RO_0000052 characteristic of role_of a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/BFO_0000050 part of http://purl.obolibrary.org/obo/RO_0002131 overlaps part_of a core relation that holds between a part and its whole http://purl.obolibrary.org/obo/RO_0002233 has input http://purl.obolibrary.org/obo/RO_0000057 has_participant consumes p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. http://purl.obolibrary.org/obo/RO_0002314 characteristic of part of http://purl.obolibrary.org/obo/RO_0002502 depends on inheres in part of q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. http://purl.obolibrary.org/obo/RO_0002215 capable of http://purl.obolibrary.org/obo/RO_0002216 capable of part of has function realized in A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. http://purl.obolibrary.org/obo/RO_0002331 involved in http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of enables part of c involved_in p if and only if c enables some process p', and p' is part of p http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of http://purl.obolibrary.org/obo/RO_0002500 causal agent in process involved in or reguates c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p http://purl.obolibrary.org/obo/RO_0002216 capable of part of http://purl.obolibrary.org/obo/RO_0002500 causal agent in process has function in c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. http://purl.obolibrary.org/obo/RO_0002329 part of structure that is capable of http://purl.obolibrary.org/obo/RO_0002328 functionally related to 0 this relation holds between c and p when c is part of some c', and c' is capable of p. http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes influences (processual) p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. http://purl.obolibrary.org/obo/RO_0002224 starts with http://purl.obolibrary.org/obo/RO_0002222 temporally related to started by x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0002230 ends with http://purl.obolibrary.org/obo/RO_0002222 temporally related to finished with x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0002231 has start location http://purl.obolibrary.org/obo/RO_0002479 has part that occurs in starts with process that occurs in x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y http://purl.obolibrary.org/obo/RO_0002232 has end location http://purl.obolibrary.org/obo/RO_0002479 has part that occurs in ends with process that occurs in x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y http://purl.obolibrary.org/obo/RO_0002407 indirectly positively regulates http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates indirectly activates p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q. http://purl.obolibrary.org/obo/RO_0002413 provides input for http://purl.obolibrary.org/obo/RO_0002414 transitively provides input for directly provides input for p provides input for q iff p is immediately causally upstream of q, and there exists some c such that p has_output c and q has_input c. http://purl.obolibrary.org/obo/RO_0002432 is active in http://purl.obolibrary.org/obo/RO_0002328 functionally related to executes activity in c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. http://purl.obolibrary.org/obo/RO_0002450 directly positively regulates activity of http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of directly activates The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. http://purl.obolibrary.org/obo/RO_0004028 realized in response to stimulus http://purl.obolibrary.org/obo/RO_0002410 causally related to A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M. http://purl.obolibrary.org/obo/BFO_0000121 has temporal part http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part [copied from inverse property 'temporal part of'] b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003]) http://purl.obolibrary.org/obo/BFO_0000138 proper part of occurrent http://purl.obolibrary.org/obo/BFO_0000132 part of occurrent b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001]) http://purl.obolibrary.org/obo/BFO_0000139 temporal part of http://purl.obolibrary.org/obo/BFO_0000132 part of occurrent b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003]) http://purl.obolibrary.org/obo/RO_0002025 has effector activity http://purl.obolibrary.org/obo/RO_0002017 has component activity A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. http://purl.obolibrary.org/obo/BFO_0000063 precedes http://purl.obolibrary.org/obo/RO_0002222 temporally related to x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/IAO_0000039 has measurement unit label http://purl.obolibrary.org/obo/BFO_0000051 has part A relation between a value specification and its unit of measurement. http://purl.obolibrary.org/obo/IAO_0000135 obsolete_specifically denotes http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty c specifically denotes r =def r is a portion of reality & c is a particular quality & c depends specifically on some independent continuant b & b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly. Marked means there is a changed or additional quality of the bearer - the quality is the information carrier. Case 1 Memory trace as mark created when reading some description of some friend. The trace can denote. Case 2 Pattern of ink arrayed on paper as mark when writing down a friend's name Case 3 Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file. http://purl.obolibrary.org/obo/IAO_0000142 mentions http://purl.obolibrary.org/obo/IAO_0000136 is about An information artifact IA mentions an entity E exactly when it has a component/part that denotes E http://purl.obolibrary.org/obo/IAO_0000219 denotes http://purl.obolibrary.org/obo/IAO_0000136 is about A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically http://purl.obolibrary.org/obo/IAO_0000221 is quality measurement of http://purl.obolibrary.org/obo/IAO_0000136 is about m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q http://purl.obolibrary.org/obo/IAO_0000413 is duration of http://purl.obolibrary.org/obo/IAO_0000136 is about relates a process to a time-measurement-datum that represents the duration of the process http://purl.obolibrary.org/obo/IAO_0000418 is quality specification of http://purl.obolibrary.org/obo/IAO_0000136 is about A relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality. http://purl.obolibrary.org/obo/IAO_0000581 has time stamp http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken http://purl.obolibrary.org/obo/IAO_0000583 has measurement datum http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the measurement datum that was measured http://purl.obolibrary.org/obo/OBI_0000293 has_specified_input http://purl.obolibrary.org/obo/RO_0000057 has_participant The inverse property of is_specified_input_of http://purl.obolibrary.org/obo/OBI_0000299 has specified output http://purl.obolibrary.org/obo/RO_0000057 has_participant The inverse property of is specified output of http://purl.obolibrary.org/obo/OBI_0000312 is specified output of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a completely executed planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/RO_0002220 adjacent to http://purl.obolibrary.org/obo/RO_0002163 spatially disjoint from x adjacent to y if and only if x and y share a boundary. http://purl.obolibrary.org/obo/RO_0002223 starts http://purl.obolibrary.org/obo/BFO_0000050 part of inverse of starts with http://purl.obolibrary.org/obo/RO_0002351 has member http://purl.obolibrary.org/obo/BFO_0000051 has part has member is a mereological relation between a collection and an item. http://purl.obolibrary.org/obo/RO_0002018 has component process http://purl.obolibrary.org/obo/RO_0002180 has component w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic http://purl.obolibrary.org/obo/RO_0002410 causally related to A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0019001 positively regulates characteristic http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0019002 negatively regulates characteristic http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0002333 enabled by http://purl.obolibrary.org/obo/RO_0002328 functionally related to inverse of enables http://purl.obolibrary.org/obo/RO_0002404 causally downstream of http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes inverse of upstream of http://purl.obolibrary.org/obo/RO_0002412 immediately causally upstream of http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q. http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of http://purl.obolibrary.org/obo/RO_0011002 regulates activity of The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B. http://purl.obolibrary.org/obo/RO_0002566 causally influences http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size). http://purl.obolibrary.org/obo/BFO_0000111 has proper continuant part at all times http://purl.obolibrary.org/obo/BFO_0000110 has continuant part at all times b has_proper_continuant_part c at t = Def. c proper_continuant_part_of b at t. [XXX-001 http://purl.obolibrary.org/obo/RO_0002263 acts upstream of http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. http://purl.obolibrary.org/obo/RO_0002304 causally upstream of, positive effect http://purl.obolibrary.org/obo/RO_0004047 causally upstream of or within, positive effect p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q. http://purl.obolibrary.org/obo/RO_0002305 causally upstream of, negative effect http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q. http://purl.obolibrary.org/obo/RO_0002131 overlaps http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to x overlaps y if and only if there exists some z such that x has part z and z part of y http://purl.obolibrary.org/obo/RO_0000091 has disposition http://purl.obolibrary.org/obo/RO_0000053 has characteristic a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000092 disposition of http://purl.obolibrary.org/obo/RO_0000052 characteristic of inverse of has disposition http://purl.obolibrary.org/obo/RO_0011002 regulates activity of http://purl.obolibrary.org/obo/RO_0002566 causally influences The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B. http://purl.obolibrary.org/obo/RO_0002411 causally upstream of http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q. http://purl.obolibrary.org/obo/RO_0002211 regulates http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q. http://purl.obolibrary.org/obo/RO_0002212 negatively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q. http://purl.obolibrary.org/obo/RO_0002213 positively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q. http://purl.obolibrary.org/obo/RO_0002180 has component http://purl.obolibrary.org/obo/BFO_0000051 has part w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. http://purl.obolibrary.org/obo/RO_0002163 spatially disjoint from http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to A is spatially_disjoint_from B if and only if they have no parts in common http://purl.obolibrary.org/obo/RO_0002352 input of http://purl.obolibrary.org/obo/RO_0002328 functionally related to inverse of has input http://purl.obolibrary.org/obo/RO_0002353 output of http://purl.obolibrary.org/obo/RO_0002328 functionally related to inverse of has output http://purl.obolibrary.org/obo/RO_0002023 directly negatively regulated by http://purl.obolibrary.org/obo/RO_0002022 directly regulated by Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. http://purl.obolibrary.org/obo/RO_0002024 directly positively regulated by http://purl.obolibrary.org/obo/RO_0002022 directly regulated by Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. http://purl.obolibrary.org/obo/RO_0012011 indirectly causally upstream of http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q. http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates http://purl.obolibrary.org/obo/RO_0012011 indirectly causally upstream of p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q. http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0002500 causal agent in process c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. http://purl.obolibrary.org/obo/RO_0004031 enables subfunction http://purl.obolibrary.org/obo/RO_0002328 functionally related to Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. http://purl.obolibrary.org/obo/RO_0004034 acts upstream of, positive effect http://purl.obolibrary.org/obo/RO_0004032 acts upstream of or within, positive effect c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive http://purl.obolibrary.org/obo/RO_0004035 acts upstream of, negative effect http://purl.obolibrary.org/obo/RO_0004033 acts upstream of or within, negative effect c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative http://purl.obolibrary.org/obo/BFO_0000118 has proper occurrent part http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001 http://purl.obolibrary.org/obo/BFO_0000137 proper part of continuant at all times http://purl.obolibrary.org/obo/BFO_0000177 part of continuant at all times b proper_continuant_part_of c at t =Def. b continuant_part_of c at t & b and c are not identical. (axiom label in BFO2 Reference: [004-001]) http://purl.obolibrary.org/obo/RO_0002334 regulated by http://purl.obolibrary.org/obo/RO_0002427 causally downstream of or within inverse of regulates http://purl.obolibrary.org/obo/RO_0002335 negatively regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by inverse of negatively regulates http://purl.obolibrary.org/obo/RO_0002336 positively regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by inverse of positively regulates http://purl.obolibrary.org/obo/RO_0002379 spatially coextensive with http://purl.obolibrary.org/obo/RO_0002131 overlaps x spatially_coextensive_with y if and inly if x and y have the same location http://purl.obolibrary.org/obo/RO_0002427 causally downstream of or within http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes inverse of causally upstream of or within http://purl.obolibrary.org/obo/RO_0002500 causal agent in process http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process A relationship between a material entity and a process where the material entity has some causal role that influences the process http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes http://purl.obolibrary.org/obo/RO_0002410 causally related to p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. http://purl.obolibrary.org/obo/RO_0002584 has part structure that is capable of http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process http://purl.obolibrary.org/obo/RO_0002410 causally related to A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. http://purl.obolibrary.org/obo/RO_0002596 capable of regulating http://purl.obolibrary.org/obo/RO_0002500 causal agent in process Holds between c and p if and only if c is capable of some activity a, and a regulates p. http://purl.obolibrary.org/obo/RO_0002597 capable of negatively regulating http://purl.obolibrary.org/obo/RO_0002596 capable of regulating Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. http://purl.obolibrary.org/obo/RO_0002598 capable of positively regulating http://purl.obolibrary.org/obo/RO_0002596 capable of regulating Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. http://purl.obolibrary.org/obo/RO_0002608 process has causal agent http://purl.obolibrary.org/obo/RO_0002410 causally related to Inverse of 'causal agent in process' http://purl.obolibrary.org/obo/RO_0002015 has positive regulatory component activity http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity http://purl.obolibrary.org/obo/RO_0002017 has component activity A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. http://purl.obolibrary.org/obo/RO_0002014 has negative regulatory component activity http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. http://purl.obolibrary.org/obo/RO_0002229 ends http://purl.obolibrary.org/obo/BFO_0000050 part of inverse of ends with http://purl.obolibrary.org/obo/RO_0009501 realized in response to http://purl.obolibrary.org/obo/RO_0002410 causally related to r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r. http://purl.obolibrary.org/obo/RO_0002325 colocalizes with http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to a colocalizes_with b if and only if a is transiently or peripherally associated with b[GO]. http://purl.obolibrary.org/obo/RO_0002414 transitively provides input for http://purl.obolibrary.org/obo/RO_0004047 causally upstream of or within, positive effect transitive form of directly_provides_input_for http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of c involved in regulation of p if c is involved in some p' and p' regulates some p http://purl.obolibrary.org/obo/RO_0002429 involved in positive regulation of http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of c involved in regulation of p if c is involved in some p' and p' positively regulates some p http://purl.obolibrary.org/obo/RO_0002430 involved in negative regulation of http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of c involved in regulation of p if c is involved in some p' and p' negatively regulates some p http://purl.obolibrary.org/obo/RO_0002578 directly regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p directly regulates q iff p is immediately causally upstream of q and p regulates q. http://purl.obolibrary.org/obo/RO_0002629 directly positively regulates http://purl.obolibrary.org/obo/RO_0002578 directly regulates p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q. http://purl.obolibrary.org/obo/RO_0002630 directly negatively regulates http://purl.obolibrary.org/obo/RO_0002578 directly regulates p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q. http://purl.obolibrary.org/obo/RO_0002090 immediately_precedes http://purl.obolibrary.org/obo/BFO_0000063 precedes meets http://purl.obolibrary.org/obo/RO_0002093 ends during http://purl.obolibrary.org/obo/RO_0002222 temporally related to overlaps http://purl.obolibrary.org/obo/RO_0002447 phosphorylates http://purl.obolibrary.org/obo/RO_0002436 molecularly interacts with An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. http://purl.obolibrary.org/obo/BFO_0000181 has proper temporal part http://purl.obolibrary.org/obo/BFO_0000118 has proper occurrent part http://purl.obolibrary.org/obo/BFO_0000136 proper temporal part of http://purl.obolibrary.org/obo/BFO_0000139 temporal part of http://purl.obolibrary.org/obo/OBI_0000295 is_specified_input_of http://purl.obolibrary.org/obo/RO_0000056 participates in http://purl.obolibrary.org/obo/RO_0002405 immediately causally downstream of http://purl.obolibrary.org/obo/RO_0002404 causally downstream of http://purl.obolibrary.org/obo/APOLLO_SV_00000004 obsolete basis of http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/APOLLO_SV_00000028 obsolete is based on http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/APOLLO_SV_00000116 obsolete causally_precedes http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/APOLLO_SV_00000177 obsoleted_administrated by http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.org/obo/owl/OBO_REL#has_disposition obsolete has_disposition http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.org/obo/owl/OBO_REL#negatively_regulates negatively_regulates http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.org/obo/owl/OBO_REL#realized_by obsolete_realized_by http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.org/obo/owl/OBO_REL#regulates regulates http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/IAO_0000220 obsolete_materially denotes http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/IAO_0000222 obsolete_describes http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/IAO_0000223 obsolete_represents http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/OMIABIS_0000008 obsolete owns http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://www.obofoundry.org/ro/ro.owl#has_proper_part obsolete has proper part http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/RO_0002017 has component activity http://purl.obolibrary.org/obo/RO_0002018 has component process http://purl.obolibrary.org/obo/IAO_0000407 has coordinate unit label http://purl.obolibrary.org/obo/BFO_0000051 has part http://purl.obolibrary.org/obo/RO_0002559 causally influenced by http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities http://purl.obolibrary.org/obo/RO_0002563 interaction relation helper property http://purl.obolibrary.org/obo/RO_0002464 helper property (not for use in curation) http://purl.obolibrary.org/obo/RO_0002564 molecular interaction relation helper property http://purl.obolibrary.org/obo/RO_0002563 interaction relation helper property http://purl.obolibrary.org/obo/RO_0002481 is kinase activity http://purl.obolibrary.org/obo/RO_0002564 molecular interaction relation helper property http://purl.obolibrary.org/obo/RO_0002086 ends after http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/RO_0002084 during which ends http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/BFO_0000184 history of http://purl.obolibrary.org/obo/BFO_0000066 occurs in http://purl.obolibrary.org/obo/RO_0002297 results in formation of http://purl.obolibrary.org/obo/IDO_0000660 results_in http://purl.obolibrary.org/obo/RO_0004033 acts upstream of or within, negative effect http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0004032 acts upstream of or within, positive effect http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0002022 directly regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities http://purl.obolibrary.org/obo/RO_0002410 causally related to http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0004047 causally upstream of or within, positive effect http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/BFO_0000156 has temporal occupant http://purl.obolibrary.org/obo/BFO_0000157 during which exists http://purl.obolibrary.org/obo/BFO_0000155 occupies temporal region http://purl.obolibrary.org/obo/BFO_0000108 exists at http://purl.obolibrary.org/obo/BFO_0000054 realized in is_realized_as Relation between a realizable and a process. Reciprocal relation of realizes [GOC:cjm] http://purl.obolibrary.org/obo/RO_0000053 has characteristic is bearer of Inverse of characteristic_of http://purl.obolibrary.org/obo/RO_0000056 participates in participates_in a relation between a continuant and a process, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0000057 has_participant has_participant a relation between a process and a continuant, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0001000 derives from derives_from a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001001 derives into derives_into a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001015 location of location_of a relation between two independent continuants, the location and the target, in which the target is entirely within the location http://purl.obolibrary.org/obo/RO_0002000 2D boundary of is boundary of a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0002002 has 2D boundary has_2D_boundary a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0001025 located in located_in a relation between two independent continuants, the target and the location, in which the target is entirely within the location http://purl.obolibrary.org/obo/BFO_0000066 occurs in unfolds_in b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t http://purl.obolibrary.org/obo/APOLLO_SV_00000037 commissions a commissions b, iff a does not participate in the creation or execution of b and participates in a legal agreement that c participates on the creation or execution of b and c getting something in exchange for that participation. http://purl.obolibrary.org/obo/APOLLO_SV_00000057 instantiates A relation between to particulars such that aRb where b can be any kind of entity while the second is a universal. b instantiates a at some times. http://purl.obolibrary.org/obo/APOLLO_SV_00000067 simulates a simulates b, iff a is a purely intentional entity that is representing a fictional individual or fact b and a participates in a simulating. http://purl.obolibrary.org/obo/IAO_0000143 mentioned by Inverse of the relation 'mentions' http://purl.obolibrary.org/obo/BFO_0000055 realizes Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process http://purl.obolibrary.org/obo/BFO_0000067 contains process [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t [XXX-001 http://purl.obolibrary.org/obo/IAO_0000004 has measurement value A relation between a scalar measurement data item and a number that quantifies it. http://purl.obolibrary.org/obo/IAO_0000136 is about A (currently) primitive relation that relates an information artifact to an entity. http://purl.obolibrary.org/obo/IAO_0000417 is quality measured as inverse of the relation of is quality measurement of http://purl.obolibrary.org/obo/IAO_0000419 quality is specified as inverse of the relation of is quality specification of http://purl.obolibrary.org/obo/OBI_0000417 achieves_planned_objective This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0001938 has value specification A relation between an information content entity and a value specification that specifies its value. http://purl.obolibrary.org/obo/RO_0000058 is concretized as A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes. http://purl.obolibrary.org/obo/RO_0000059 concretizes A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant. http://purl.obolibrary.org/obo/OMIABIS_0000048 obsolete is owned by a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b. http://purl.obolibrary.org/obo/APOLLO_SV_00000543 has basis in (Q is_a Quality ⋀ D is_a Disposition ⋀ Q base of D) ® ∀q (q instance_of Q ® b (q inheres_in b ⋀ d (d instance_of D ⋀ d inheres_in b))) http://purl.obolibrary.org/obo/RO_0017001 device utilizes material X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y. http://purl.obolibrary.org/obo/RO_0003000 produces a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. http://purl.obolibrary.org/obo/RO_0003001 produced by a produced_by b iff some process that occurs_in b has_output a. http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001]) http://purl.obolibrary.org/obo/RO_0002434 interacts with A relationship that holds between two entities in which the processes executed by the two entities are causally connected. http://purl.obolibrary.org/obo/BFO_0000177 part of continuant at all times [copied from inverse property 'has continuant part at all times that part exists'] forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t) http://purl.obolibrary.org/obo/BFO_0000187 has continuant part at all times that part exists forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t) http://purl.obolibrary.org/obo/GEO_000000329 is subordinate authority of A governing organization G1 is subordinate to another governing organization G2 iff there is some authority possessed by G2 that is not possessed by G1 and G1's jurisdiction falls within the relevant jurisdiction of G2. http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to A mereological relationship or a topological relationship http://purl.obolibrary.org/obo/RO_0002328 functionally related to A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. http://purl.obolibrary.org/obo/RO_0020105 is anatomical entity This property only applies to anatomical entities. http://purl.obolibrary.org/obo/BFO_0000132 part of occurrent [copied from inverse property 'has occurrent part'] b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001]) http://purl.obolibrary.org/obo/IAO_0000235 denoted by inverse of the relation 'denotes' http://purl.obolibrary.org/obo/OBIB_0000735 is owned by a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b. http://purl.obolibrary.org/obo/BFO_0000110 has continuant part at all times b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001]) http://purl.obolibrary.org/obo/RO_0002410 causally related to relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. http://purl.obolibrary.org/obo/RO_0002479 has part that occurs in p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. http://purl.obolibrary.org/obo/RO_0010001 generically depends on A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*. http://purl.obolibrary.org/obo/RO_0010002 is carrier of *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t* http://purl.obolibrary.org/obo/BFO_0000075 is aggregate of aggregate_of http://purl.obolibrary.org/obo/BFO_0000185 has history http://purl.obolibrary.org/obo/APOLLO_SV_00000102 is expressed as http://purl.obolibrary.org/obo/IAO_0000404 has x coordinate value http://purl.obolibrary.org/obo/IAO_0000405 has z coordinate value http://purl.obolibrary.org/obo/IAO_0000406 has y coordinate value http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty ObsoleteProperty http://purl.obolibrary.org/obo/BFO_0000113 has material basis at all times http://purl.obolibrary.org/obo/RO_0004096 DEPRECATED inheres in http://purl.obolibrary.org/obo/RO_0004097 DEPRECATED bearer of http://purl.obolibrary.org/obo/BFO_0000083 occupies spatial region at some time http://purl.obolibrary.org/obo/BFO_0000123 has spatial occupant at some time http://purl.obolibrary.org/obo/GEO_000000328 is in aggregate http://purl.obolibrary.org/obo/GEO_000000336 has jurisdiction in http://purl.obolibrary.org/obo/RO_0002464 helper property (not for use in curation) http://purl.obolibrary.org/obo/OMRSE_00000068 is administered by http://purl.obolibrary.org/obo/OMRSE_00000070 is enrolled in school http://purl.obolibrary.org/obo/OMRSE_00000071 is admitted to hospital http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/RO_0002502 depends on http://purl.obolibrary.org/obo/IDO_0000660 results_in http://purl.obolibrary.org/obo/BFO_0000167 has participant at all times http://purl.obolibrary.org/obo/BFO_0000169 specifically depends on at some time http://purl.obolibrary.org/obo/OBIB_0000732 owns http://purl.obolibrary.org/obo/BFO_0000157 during which exists http://purl.obolibrary.org/obo/BFO_0000108 exists at