Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://www.biomodels.net/kisao/KISAO#KISAO_0000547 linear programming http://www.biomodels.net/kisao/KISAO#KISAO_0000546 convex optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000550 simplex method http://www.biomodels.net/kisao/KISAO#KISAO_0000547 linear programming http://www.biomodels.net/kisao/KISAO#KISAO_0000551 primal-dual interior point method http://www.biomodels.net/kisao/KISAO#KISAO_0000547 linear programming http://www.biomodels.net/kisao/KISAO#KISAO_0000548 quadratic programming http://www.biomodels.net/kisao/KISAO#KISAO_0000549 non-linear programming http://www.biomodels.net/kisao/KISAO#KISAO_0000566 stochastic second order Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000564 stochastic Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000581 BKMC http://www.biomodels.net/kisao/KISAO#KISAO_0000319 Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000589 ACB flux sampling method http://www.biomodels.net/kisao/KISAO#KISAO_0000588 flux sampling http://www.biomodels.net/kisao/KISAO#KISAO_0000590 ACHR flux sampling method http://www.biomodels.net/kisao/KISAO#KISAO_0000588 flux sampling http://www.biomodels.net/kisao/KISAO#KISAO_0000576 quadratic MOMA http://www.biomodels.net/kisao/KISAO#KISAO_0000593 MOMA http://www.biomodels.net/kisao/KISAO#KISAO_0000579 linear MOMA http://www.biomodels.net/kisao/KISAO#KISAO_0000593 MOMA http://www.biomodels.net/kisao/KISAO#KISAO_0000583 minimum order http://www.biomodels.net/kisao/KISAO#KISAO_0000594 order http://www.biomodels.net/kisao/KISAO#KISAO_0000584 initial order http://www.biomodels.net/kisao/KISAO#KISAO_0000594 order http://www.biomodels.net/kisao/KISAO#KISAO_0000484 maximum order http://www.biomodels.net/kisao/KISAO#KISAO_0000594 order http://www.biomodels.net/kisao/KISAO#KISAO_0000592 dynamic rFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000595 rFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000596 srFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000571 absolute tolerance adjustment factor http://www.biomodels.net/kisao/KISAO#KISAO_0000597 tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000597 tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000211 absolute tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000597 tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000500 SOA-DFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000499 dynamic flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000501 DOA-DFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000499 dynamic flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000502 DA-DFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000499 dynamic flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000686 Enzyme Cost Minimization http://www.biomodels.net/kisao/KISAO#KISAO_0000685 biological state optimization method http://www.biomodels.net/kisao/KISAO#KISAO_0000687 Max-min Driving Force method http://www.biomodels.net/kisao/KISAO#KISAO_0000685 biological state optimization method http://www.biomodels.net/kisao/KISAO#KISAO_0000669 Resource Balance Analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000622 flux balance method http://www.biomodels.net/kisao/KISAO#KISAO_0000685 biological state optimization method http://www.biomodels.net/kisao/KISAO#KISAO_0000689 mathematical system http://www.biomodels.net/kisao/KISAO#KISAO_0000688 type of system described http://www.biomodels.net/kisao/KISAO#KISAO_0000690 biological system http://www.biomodels.net/kisao/KISAO#KISAO_0000688 type of system described http://www.biomodels.net/kisao/KISAO#KISAO_0000691 metabolic system http://www.biomodels.net/kisao/KISAO#KISAO_0000690 biological system http://www.biomodels.net/kisao/KISAO#KISAO_0000692 cellular system http://www.biomodels.net/kisao/KISAO#KISAO_0000690 biological system http://www.biomodels.net/kisao/KISAO#KISAO_0000693 biochemical system http://www.biomodels.net/kisao/KISAO#KISAO_0000690 biological system http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000694 ODE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000377 one-step method http://www.biomodels.net/kisao/KISAO#KISAO_0000694 ODE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000694 ODE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000564 stochastic Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000697 SDE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000286 Euler-Maruyama method http://www.biomodels.net/kisao/KISAO#KISAO_0000697 SDE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000287 Milstein method http://www.biomodels.net/kisao/KISAO#KISAO_0000697 SDE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000432 IDA-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000699 DAE Solver http://www.biomodels.net/kisao/KISAO#KISAO_0000507 genetic algorithm SR http://www.biomodels.net/kisao/KISAO#KISAO_0000506 genetic algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000509 evolutionary strategy http://www.biomodels.net/kisao/KISAO#KISAO_0000508 evolutionary programming http://www.biomodels.net/kisao/KISAO#KISAO_0000517 number of generations http://www.biomodels.net/kisao/KISAO#KISAO_0000518 evolutionary algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000519 population size http://www.biomodels.net/kisao/KISAO#KISAO_0000518 evolutionary algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000506 genetic algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000520 evolutionary algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000508 evolutionary programming http://www.biomodels.net/kisao/KISAO#KISAO_0000520 evolutionary algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000522 start temperature http://www.biomodels.net/kisao/KISAO#KISAO_0000521 simulated annealing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000523 cooling factor http://www.biomodels.net/kisao/KISAO#KISAO_0000521 simulated annealing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000051 Bortz-Kalos-Lebowitz algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000075 Gillespie multi-particle method http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000095 sub-volume stochastic reaction-diffusion algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000336 D-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000611 incremental stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000613 stochastic simulation algorithm with normally-distributed next reaction times http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000618 bunker http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000619 emc-sim http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000685 biological state optimization method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000694 ODE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000697 SDE solver http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000699 DAE Solver http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000056 Smoluchowski equation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000273 hard-particle molecular dynamics http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000281 multistep method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000306 Lagrangian sliding fluid element algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000314 S-System power-law canonical differential equations solver http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000319 Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000363 rule-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000397 preconditioning technique http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000419 metamodelling method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000448 logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000470 optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000473 Bayesian inference algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000491 discrete event simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000497 KLU http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000658 logical model analysis method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000664 Second order backward implicit product Euler scheme http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000624 method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000263 NFSim agent-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000017 multi-state agent-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000362 implicit-state Doob-Gillespie algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000017 multi-state agent-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000586 Gibson-Bruck next reaction algorithm with indexed priority queue http://www.biomodels.net/kisao/KISAO#KISAO_0000027 Gibson-Bruck next reaction algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000668 Numerical Recipes in C "stiff" Rosenbrock method http://www.biomodels.net/kisao/KISAO#KISAO_0000033 Rosenbrock method http://www.biomodels.net/kisao/KISAO#KISAO_0000575 hybrid tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000040 Poisson tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000045 implicit tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000046 trapezoidal tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000048 adaptive explicit-implicit tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000074 binomial tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000081 estimated midpoint tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000084 nonnegative Poisson tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000351 multinomial tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000524 partitioned leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000582 Spatiocyte method http://www.biomodels.net/kisao/KISAO#KISAO_0000056 Smoluchowski equation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000057 Brownian diffusion Smoluchowski method http://www.biomodels.net/kisao/KISAO#KISAO_0000056 Smoluchowski equation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000058 Greens function reaction dynamics http://www.biomodels.net/kisao/KISAO#KISAO_0000056 Smoluchowski equation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000316 enhanced Greens function reaction dynamics http://www.biomodels.net/kisao/KISAO#KISAO_0000056 Smoluchowski equation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000537 explicit Runge-Kutta method of order 3(2) http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000587 IMEX http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000032 explicit fourth-order Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000033 Rosenbrock method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000276 Gill method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000296 Hammer-Hollingsworth method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000297 Lobatto method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000299 Butcher-Kuntzmann method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000301 Heun method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000304 Radau method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000318 Gauss-Legendre Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000367 partitioned Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000378 implicit midpoint rule http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000381 midpoint method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000382 modified midpoint method http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000384 semi-implicit midpoint rule http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000612 implicit 4th order Runge-Kutta method at Gaussian points http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000315 lattice gas automata http://www.biomodels.net/kisao/KISAO#KISAO_0000068 deterministic cellular automata update algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000334 multiparticle lattice gas automata http://www.biomodels.net/kisao/KISAO#KISAO_0000068 deterministic cellular automata update algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000607 hierarchical Fehlberg method http://www.biomodels.net/kisao/KISAO#KISAO_0000086 Fehlberg method http://www.biomodels.net/kisao/KISAO#KISAO_0000560 LSODA/LSODAR hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000071 LSODE http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000088 LSODA http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000089 LSODAR http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000090 LSODI http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000091 LSODIS http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000093 LSODPK http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000232 LSOIBT http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000233 LSODES http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000234 LSODKR http://www.biomodels.net/kisao/KISAO#KISAO_0000094 Livermore solver http://www.biomodels.net/kisao/KISAO#KISAO_0000022 Elf and Ehrenberg method http://www.biomodels.net/kisao/KISAO#KISAO_0000095 sub-volume stochastic reaction-diffusion algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000076 Stundzia and Lumsden method http://www.biomodels.net/kisao/KISAO#KISAO_0000095 sub-volume stochastic reaction-diffusion algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000688 type of system described http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000098 type of variable http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000099 type of system behaviour http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000100 type of progression time step http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000102 spatial description http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000235 type of solution http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000238 type of method http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000311 type of domain geometry handling http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000322 hybridity http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000366 symplecticness http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000451 type of updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000105 discrete variable http://www.biomodels.net/kisao/KISAO#KISAO_0000098 type of variable http://www.biomodels.net/kisao/KISAO#KISAO_0000106 continuous variable http://www.biomodels.net/kisao/KISAO#KISAO_0000098 type of variable http://www.biomodels.net/kisao/KISAO#KISAO_0000103 deterministic system behaviour http://www.biomodels.net/kisao/KISAO#KISAO_0000099 type of system behaviour http://www.biomodels.net/kisao/KISAO#KISAO_0000104 stochastic system behaviour http://www.biomodels.net/kisao/KISAO#KISAO_0000099 type of system behaviour http://www.biomodels.net/kisao/KISAO#KISAO_0000107 progression with adaptive time step http://www.biomodels.net/kisao/KISAO#KISAO_0000100 type of progression time step http://www.biomodels.net/kisao/KISAO#KISAO_0000108 progression with fixed time step http://www.biomodels.net/kisao/KISAO#KISAO_0000100 type of progression time step http://www.biomodels.net/kisao/KISAO#KISAO_0000572 level of superimposed noise http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000574 species transition probabilities http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000577 flux minimization weight http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000695 parameters for http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000518 evolutionary algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000521 simulated annealing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000420 number of partial least squares components http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000421 type of validation http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000422 number of N-way partial least squares regression factors http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000429 clusterization parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000430 variables preprocessing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000475 integration method http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000476 iteration type http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000477 linear solver http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000478 preconditioner http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000481 interpolate solution http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000482 half-bandwith parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000487 minimum damping http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000488 seed http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000680 duration http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000498 number of runs http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000525 stop condition http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000529 parallelism http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000531 fraction of optimum http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000532 loopless http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000533 pFBA factor http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000534 reactions http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000556 relative quadrature tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000558 relative steady-state tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000683 relative tolerance for approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000604 MSR tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000605 SDE tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000209 relative tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000555 absolute quadrature tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000211 absolute tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000557 absolute steady-state tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000211 absolute tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000565 absolute tolerance for root finding http://www.biomodels.net/kisao/KISAO#KISAO_0000211 absolute tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000561 Pahle hybrid Gibson-Bruck Next Reaction method/Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000231 Pahle hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000562 Pahle hybrid Gibson-Bruck Next Reaction method/LSODA method http://www.biomodels.net/kisao/KISAO#KISAO_0000231 Pahle hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000563 Pahle hybrid Gibson-Bruck Next Reaction method/RK-45 method http://www.biomodels.net/kisao/KISAO#KISAO_0000231 Pahle hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000236 exact solution http://www.biomodels.net/kisao/KISAO#KISAO_0000235 type of solution http://www.biomodels.net/kisao/KISAO#KISAO_0000237 approximate solution http://www.biomodels.net/kisao/KISAO#KISAO_0000235 type of solution http://www.biomodels.net/kisao/KISAO#KISAO_0000239 explicit method type http://www.biomodels.net/kisao/KISAO#KISAO_0000238 type of method http://www.biomodels.net/kisao/KISAO#KISAO_0000240 implicit method type http://www.biomodels.net/kisao/KISAO#KISAO_0000238 type of method http://www.biomodels.net/kisao/KISAO#KISAO_0000335 generalized stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000015 Gillespie first reaction algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000029 Gillespie direct algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000606 hierarchical stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000538 safety factor on new step selection http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000539 minimum factor to change step size by http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000540 maximum factor to change step size by http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000541 beta parameter for stabilized step size control http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000543 stability limit detection flag http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000545 include sensitivity variables in error control mechanism http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000559 initial step size http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000570 auto reduce tolerances http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000597 tolerance http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000228 tau-leaping epsilon http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000254 Brownian diffusion accuracy http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000325 minimum fast/discrete reaction occurrences number http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000326 number of samples http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000467 maximum step size http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000483 step size http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000485 minimum step size http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000665 maximum number of iterations for root finding http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000666 Jacobian epsilon http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000667 memory size http://www.biomodels.net/kisao/KISAO#KISAO_0000242 error control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000542 correction step should use internally generated full Jacobian http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000552 optimization method http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000553 optimization solver http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000567 force physical correctness http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000578 nested algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000594 order http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000216 use reduced model http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000230 minimum reactions per leap http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000469 maximal timestep http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000670 use multiple steps http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000671 use stiff method http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000673 skip reactions that produce negative species amounts http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000674 presimulate http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000675 Broyden method http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000676 degree of linearity http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000682 allow approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000614 implementation http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000656 use adaptive time steps http://www.biomodels.net/kisao/KISAO#KISAO_0000243 method switching control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000223 number of history bins http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000253 coarse-graining factor http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000332 ER-leap initial leap http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000415 maximum number of steps http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000486 maximum iterations http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000681 maximum time http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000684 number of steps per output http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000601 number of trials http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000602 minimum species threshold for continuous approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000603 minimum reaction rate for continuous approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000244 granularity control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000203 particle number lower limit http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000204 particle number upper limit http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000205 partitioning interval http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000248 tau-leaping delta http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000249 critical firing threshold http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000257 surface-bound epsilon http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000258 neighbour distance http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000260 virtual box size http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000327 maximum discrete number http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000328 minimum fast rate http://www.biomodels.net/kisao/KISAO#KISAO_0000252 partitioning control parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000255 molecules per virtual box http://www.biomodels.net/kisao/KISAO#KISAO_0000260 virtual box size http://www.biomodels.net/kisao/KISAO#KISAO_0000256 virtual box side length http://www.biomodels.net/kisao/KISAO#KISAO_0000260 virtual box size http://www.biomodels.net/kisao/KISAO#KISAO_0000030 Euler forward method http://www.biomodels.net/kisao/KISAO#KISAO_0000261 Euler method http://www.biomodels.net/kisao/KISAO#KISAO_0000031 Euler backward method http://www.biomodels.net/kisao/KISAO#KISAO_0000261 Euler method http://www.biomodels.net/kisao/KISAO#KISAO_0000068 deterministic cellular automata update algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000264 cellular automata update method http://www.biomodels.net/kisao/KISAO#KISAO_0000288 backward differentiation formula http://www.biomodels.net/kisao/KISAO#KISAO_0000281 multistep method http://www.biomodels.net/kisao/KISAO#KISAO_0000289 Adams method http://www.biomodels.net/kisao/KISAO#KISAO_0000281 multistep method http://www.biomodels.net/kisao/KISAO#KISAO_0000615 fully-implicit regular grid finite volume method with a variable time step http://www.biomodels.net/kisao/KISAO#KISAO_0000285 finite volume method http://www.biomodels.net/kisao/KISAO#KISAO_0000616 semi-implicit regular grid finite volume method with a fixed time step http://www.biomodels.net/kisao/KISAO#KISAO_0000285 finite volume method http://www.biomodels.net/kisao/KISAO#KISAO_0000279 Adams-Bashforth method http://www.biomodels.net/kisao/KISAO#KISAO_0000289 Adams method http://www.biomodels.net/kisao/KISAO#KISAO_0000280 Adams-Moulton method http://www.biomodels.net/kisao/KISAO#KISAO_0000289 Adams method http://www.biomodels.net/kisao/KISAO#KISAO_0000364 Adams predictor-corrector method http://www.biomodels.net/kisao/KISAO#KISAO_0000289 Adams method http://www.biomodels.net/kisao/KISAO#KISAO_0000290 Merson method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000303 Zonneveld method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000305 Verner method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000435 embedded Runge-Kutta 5(4) method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000436 Dormand-Prince 8(5,3) method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000609 embedded Runge-Kutta Prince-Dormand (8,9) method http://www.biomodels.net/kisao/KISAO#KISAO_0000302 embedded Runge-Kutta method http://www.biomodels.net/kisao/KISAO#KISAO_0000308 MacCormack method http://www.biomodels.net/kisao/KISAO#KISAO_0000307 finite difference method http://www.biomodels.net/kisao/KISAO#KISAO_0000309 Crank-Nicolson method http://www.biomodels.net/kisao/KISAO#KISAO_0000307 finite difference method http://www.biomodels.net/kisao/KISAO#KISAO_0000346 mesh-based geometry handling http://www.biomodels.net/kisao/KISAO#KISAO_0000311 type of domain geometry handling http://www.biomodels.net/kisao/KISAO#KISAO_0000347 meshless geometry handling http://www.biomodels.net/kisao/KISAO#KISAO_0000311 type of domain geometry handling http://www.biomodels.net/kisao/KISAO#KISAO_0000573 probabilistic logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000448 logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000241 Gillespie-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000319 Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000274 first-passage Monte Carlo algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000319 Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000278 Metropolis Monte Carlo algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000319 Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000672 Numerical Recipes in C "quality-controlled Runge-Kutta" method http://www.biomodels.net/kisao/KISAO#KISAO_0000321 Cash-Karp method http://www.biomodels.net/kisao/KISAO#KISAO_0000003 weighted stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000027 Gibson-Bruck next reaction algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000028 slow-scale stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000038 sorting stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000323 equation-free probabilistic steady-state approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000324 nested stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000329 constant-time kinetic Monte Carlo algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000350 probability-weighted dynamic Monte Carlo method http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000610 composite-rejection stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000621 stochastic simulation leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000333 accelerated stochastic simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000338 h-version of the finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000337 finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000339 p-version of the finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000337 finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000340 h-p version of the finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000337 finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000341 mixed finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000337 finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000595 rFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000622 flux balance method http://www.biomodels.net/kisao/KISAO#KISAO_0000499 dynamic flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000622 flux balance method http://www.biomodels.net/kisao/KISAO#KISAO_0000231 Pahle hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000317 E-Cell multi-algorithm simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000320 BioRica hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000365 NDSolve method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000447 COAST http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000468 maximal timestep method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000598 hybrid Gibson - Milstein method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000599 hybrid Gibson - Euler-Maruyama method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000600 hybrid adaptive Gibson - Milstein method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000617 IDA-CVODE hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000352 hybrid method http://www.biomodels.net/kisao/KISAO#KISAO_0000386 scaled preconditioned generalized minimal residual method http://www.biomodels.net/kisao/KISAO#KISAO_0000353 generalized minimal residual algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000353 generalized minimal residual algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000357 conjugate gradient method http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000358 biconjugate gradient method http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000388 minimal residual method http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000395 improved biconjugate gradient method http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000017 multi-state agent-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000363 rule-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000021 StochSim nearest-neighbour algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000363 rule-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000264 cellular automata update method http://www.biomodels.net/kisao/KISAO#KISAO_0000363 rule-based simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000585 TOMS731 http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000285 finite volume method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000307 finite difference method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000310 method of lines http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000337 finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000342 level set method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000343 generalized finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000345 h-p cloud method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000348 extended finite element method http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000349 method of finite spheres http://www.biomodels.net/kisao/KISAO#KISAO_0000369 partial differential equation discretization method http://www.biomodels.net/kisao/KISAO#KISAO_0000696 steady state root-finding problem http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000376 linearity of equation http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000404 symmetricity of matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000623 flux balance problem http://www.biomodels.net/kisao/KISAO#KISAO_0000370 type of problem http://www.biomodels.net/kisao/KISAO#KISAO_0000403 homogeneousness of equation http://www.biomodels.net/kisao/KISAO#KISAO_0000376 linearity of equation http://www.biomodels.net/kisao/KISAO#KISAO_0000064 Runge-Kutta based method http://www.biomodels.net/kisao/KISAO#KISAO_0000377 one-step method http://www.biomodels.net/kisao/KISAO#KISAO_0000261 Euler method http://www.biomodels.net/kisao/KISAO#KISAO_0000377 one-step method http://www.biomodels.net/kisao/KISAO#KISAO_0000380 Richardson extrapolation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000377 one-step method http://www.biomodels.net/kisao/KISAO#KISAO_0000379 Bulirsch-Stoer algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000380 Richardson extrapolation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000383 Bader-Deuflhard method http://www.biomodels.net/kisao/KISAO#KISAO_0000380 Richardson extrapolation based method http://www.biomodels.net/kisao/KISAO#KISAO_0000396 transpose-free quasi-minimal residual algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000389 quasi-minimal residual method http://www.biomodels.net/kisao/KISAO#KISAO_0000394 quasi-minimal residual variant of biconjugate gradient stabilized method http://www.biomodels.net/kisao/KISAO#KISAO_0000392 biconjugate gradient stabilized method http://www.biomodels.net/kisao/KISAO#KISAO_0000389 quasi-minimal residual method http://www.biomodels.net/kisao/KISAO#KISAO_0000393 ingenious conjugate gradients-squared method http://www.biomodels.net/kisao/KISAO#KISAO_0000392 biconjugate gradient stabilized method http://www.biomodels.net/kisao/KISAO#KISAO_0000395 improved biconjugate gradient method http://www.biomodels.net/kisao/KISAO#KISAO_0000393 ingenious conjugate gradients-squared method http://www.biomodels.net/kisao/KISAO#KISAO_0000395 improved biconjugate gradient method http://www.biomodels.net/kisao/KISAO#KISAO_0000354 Krylov subspace projection method http://www.biomodels.net/kisao/KISAO#KISAO_0000398 iterative method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000371 stochastic differential equation problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000372 partial differential equation problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000373 differential-algebraic equation problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000374 ordinary differential equation problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000375 delay differential equation problem http://www.biomodels.net/kisao/KISAO#KISAO_0000405 type of differential equation http://www.biomodels.net/kisao/KISAO#KISAO_0000631 iterative root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000407 steady state root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000568 NLEQ1 http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000569 NLEQ2 http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000282 KINSOL http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000409 ordinary Newton method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000410 simplified Newton method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000411 Newton-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000412 inexact Newton method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000413 exact Newton method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000677 maximum number of steps for presimulation http://www.biomodels.net/kisao/KISAO#KISAO_0000415 maximum number of steps http://www.biomodels.net/kisao/KISAO#KISAO_0000678 maximum number of steps for approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000415 maximum number of steps http://www.biomodels.net/kisao/KISAO#KISAO_0000423 partial least squares regression-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000419 metamodelling method http://www.biomodels.net/kisao/KISAO#KISAO_0000416 partial least squares regression method http://www.biomodels.net/kisao/KISAO#KISAO_0000423 partial least squares regression-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000417 hierarchical cluster-based partial least squares regression method http://www.biomodels.net/kisao/KISAO#KISAO_0000423 partial least squares regression-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000418 N-way partial least squares regression method http://www.biomodels.net/kisao/KISAO#KISAO_0000423 partial least squares regression-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000427 number of clusters http://www.biomodels.net/kisao/KISAO#KISAO_0000429 clusterization parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000428 matrix for clusterization http://www.biomodels.net/kisao/KISAO#KISAO_0000429 clusterization parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000424 mean-centring of variables http://www.biomodels.net/kisao/KISAO#KISAO_0000430 variables preprocessing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000425 standardising of variables http://www.biomodels.net/kisao/KISAO#KISAO_0000430 variables preprocessing parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000544 IDAS http://www.biomodels.net/kisao/KISAO#KISAO_0000432 IDA-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000283 IDA http://www.biomodels.net/kisao/KISAO#KISAO_0000432 IDA-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000355 DASPK http://www.biomodels.net/kisao/KISAO#KISAO_0000432 IDA-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000356 DASSL http://www.biomodels.net/kisao/KISAO#KISAO_0000432 IDA-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000535 VODE http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000536 ZVODE http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000019 CVODE http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000020 PVODE http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000496 CVODES http://www.biomodels.net/kisao/KISAO#KISAO_0000433 CVODE-like method http://www.biomodels.net/kisao/KISAO#KISAO_0000086 Fehlberg method http://www.biomodels.net/kisao/KISAO#KISAO_0000435 embedded Runge-Kutta 5(4) method http://www.biomodels.net/kisao/KISAO#KISAO_0000087 Dormand-Prince method http://www.biomodels.net/kisao/KISAO#KISAO_0000435 embedded Runge-Kutta 5(4) method http://www.biomodels.net/kisao/KISAO#KISAO_0000321 Cash-Karp method http://www.biomodels.net/kisao/KISAO#KISAO_0000435 embedded Runge-Kutta 5(4) method http://www.biomodels.net/kisao/KISAO#KISAO_0000434 Higham-Hall method http://www.biomodels.net/kisao/KISAO#KISAO_0000435 embedded Runge-Kutta 5(4) method http://www.biomodels.net/kisao/KISAO#KISAO_0000591 mdFBA http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000527 geometric flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000608 hierarchical flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000620 parsimonius flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000449 synchronous logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000448 logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000450 asynchronous logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000448 logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000657 sequential logical simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000448 logical model simulation method http://www.biomodels.net/kisao/KISAO#KISAO_0000452 random updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000451 type of updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000453 ordered updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000451 type of updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000492 asynchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000451 type of updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000493 synchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000451 type of updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000495 random asynchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000492 asynchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000454 constant updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000453 ordered updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000455 prioritized updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000453 ordered updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000470 optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000470 optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000510 truncated Newton http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000511 steepest descent http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000512 praxis http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000513 NL2SOL http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000514 Nelder-Mead http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000515 Levenberg-Marquardt http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000516 Hooke&Jeeves http://www.biomodels.net/kisao/KISAO#KISAO_0000471 local optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000546 convex optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000549 non-linear programming http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000503 simulated annealing http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000504 random search http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000505 particle swarm http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000520 evolutionary algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000472 global optimization algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000479 upper half-bandwidth http://www.biomodels.net/kisao/KISAO#KISAO_0000482 half-bandwith parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000480 lower half-bandwidth http://www.biomodels.net/kisao/KISAO#KISAO_0000482 half-bandwith parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000219 maximum Adams order http://www.biomodels.net/kisao/KISAO#KISAO_0000484 maximum order http://www.biomodels.net/kisao/KISAO#KISAO_0000220 maximum BDF order http://www.biomodels.net/kisao/KISAO#KISAO_0000484 maximum order http://www.biomodels.net/kisao/KISAO#KISAO_0000494 fully asynchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000492 asynchronous updating policy http://www.biomodels.net/kisao/KISAO#KISAO_0000660 logical model stable state search method http://www.biomodels.net/kisao/KISAO#KISAO_0000658 logical model analysis method http://www.biomodels.net/kisao/KISAO#KISAO_0000661 logical model trap space identification method http://www.biomodels.net/kisao/KISAO#KISAO_0000658 logical model analysis method http://www.biomodels.net/kisao/KISAO#KISAO_0000659 Naldi MDD logical model stable state search method http://www.biomodels.net/kisao/KISAO#KISAO_0000660 logical model stable state search method http://www.biomodels.net/kisao/KISAO#KISAO_0000662 Klarner ASP logical model trap space identification method http://www.biomodels.net/kisao/KISAO#KISAO_0000661 logical model trap space identification method http://www.biomodels.net/kisao/KISAO#KISAO_0000663 BDD logical model trap space identification method http://www.biomodels.net/kisao/KISAO#KISAO_0000661 logical model trap space identification method http://www.biomodels.net/kisao/KISAO#KISAO_0000679 maximum time for approximation http://www.biomodels.net/kisao/KISAO#KISAO_0000681 maximum time http://www.biomodels.net/kisao/KISAO#KISAO_0000801 concentration control coefficient matrix (unscaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000802 control coefficient (scaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000803 control coefficient (unscaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000804 elasticity matrix (unscaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000805 elasticity coefficient (unscaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000806 elasticity matrix (scaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000807 elasticity coefficient (scaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000808 reduced stoichiometry matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000809 reduced Jacobian matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000810 reduced eigenvalue matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000811 stoichiometry matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000812 Jacobian matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000813 Eigenvalue matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000814 flux control coefficient matrix (unscaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000815 flux control coefficient matrix (scaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000816 link matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000817 kernel matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000818 L0 matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000819 Nr matrix http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000835 concentration control coefficient matrix (scaled) http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000554 parsimonius flux balance analysis (minimum number of active fluxes) http://www.biomodels.net/kisao/KISAO#KISAO_0000620 parsimonius flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000528 parsimonious enzyme usage flux balance analysis (minimum sum of absolute fluxes) http://www.biomodels.net/kisao/KISAO#KISAO_0000620 parsimonius flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000039 tau-leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000621 stochastic simulation leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000082 k-alpha leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000621 stochastic simulation leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000330 R-leaping algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000621 stochastic simulation leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000331 exact R-leaping algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000621 stochastic simulation leaping method http://www.biomodels.net/kisao/KISAO#KISAO_0000580 ROOM http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000588 flux sampling http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000593 MOMA http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000437 flux balance analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000526 flux variability analysis http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000398 iterative method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000624 method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000625 dense direct solver http://www.biomodels.net/kisao/KISAO#KISAO_0000624 method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000626 band direct solver http://www.biomodels.net/kisao/KISAO#KISAO_0000624 method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000627 diagonal approximate Jacobian solver http://www.biomodels.net/kisao/KISAO#KISAO_0000624 method for solving a system of linear equations http://www.biomodels.net/kisao/KISAO#KISAO_0000629 null http://www.biomodels.net/kisao/KISAO#KISAO_0000628 modelling and simulation algorithm parameter value http://www.biomodels.net/kisao/KISAO#KISAO_0000407 steady state root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000630 general steady state method http://www.biomodels.net/kisao/KISAO#KISAO_0000408 Newton-type method http://www.biomodels.net/kisao/KISAO#KISAO_0000631 iterative root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000632 functional iteration root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000631 iterative root-finding method http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000633 computational function http://www.biomodels.net/kisao/KISAO#KISAO_0000642 minimum flux http://www.biomodels.net/kisao/KISAO#KISAO_0000639 flux http://www.biomodels.net/kisao/KISAO#KISAO_0000644 maximum flux http://www.biomodels.net/kisao/KISAO#KISAO_0000639 flux http://www.biomodels.net/kisao/KISAO#KISAO_0000640 lower bound http://www.biomodels.net/kisao/KISAO#KISAO_0000641 bound http://www.biomodels.net/kisao/KISAO#KISAO_0000643 upper bound http://www.biomodels.net/kisao/KISAO#KISAO_0000641 bound http://www.biomodels.net/kisao/KISAO#KISAO_0000649 shadow price http://www.biomodels.net/kisao/KISAO#KISAO_0000650 sensitivity http://www.biomodels.net/kisao/KISAO#KISAO_0000651 reduced costs http://www.biomodels.net/kisao/KISAO#KISAO_0000650 sensitivity http://www.biomodels.net/kisao/KISAO#KISAO_0000634 scaled property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000635 unscaled property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000636 primary property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000637 derived property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000641 bound http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000647 derivative http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000655 rate http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000821 intensive property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000822 extensive property http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000830 maximum http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000840 minimum http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000841 mean http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000842 standard deviation http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000843 standard error http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000844 sum ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000845 sum http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000846 product ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000847 product http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000848 cumulative sum ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000849 cumulative sum http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000850 cumulative product ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000851 cumulative product http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000852 count ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000853 count http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000854 length ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000855 length http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000856 median ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000857 median http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000858 variance ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000859 variance http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000825 mean ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000826 standard deviation ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000827 standard error ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000828 maximum ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000829 minimum ignoring NaN http://www.biomodels.net/kisao/KISAO#KISAO_0000824 aggregation function http://www.biomodels.net/kisao/KISAO#KISAO_0000698 particle coordinates http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000800 systems property http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000638 level http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000639 flux http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000645 objective value http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000646 propensity http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000648 step http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000650 sensitivity http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000832 time http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000834 rate of change http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000836 amount http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000837 particle number http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000838 concentration http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000839 temperature http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000652 concentration rate http://www.biomodels.net/kisao/KISAO#KISAO_0000834 rate of change http://www.biomodels.net/kisao/KISAO#KISAO_0000653 particle number rate http://www.biomodels.net/kisao/KISAO#KISAO_0000834 rate of change http://www.biomodels.net/kisao/KISAO#KISAO_0000654 amount rate http://www.biomodels.net/kisao/KISAO#KISAO_0000834 rate of change http://www.biomodels.net/kisao/KISAO#KISAO_0000000 modelling and simulation algorithm http://www.biomodels.net/kisao/KISAO#KISAO_0000097 modelling and simulation algorithm characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000201 modelling and simulation algorithm parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000628 modelling and simulation algorithm parameter value http://www.biomodels.net/kisao/KISAO#KISAO_0000633 computational function http://www.biomodels.net/kisao/KISAO#KISAO_0000820 model and simulation property characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000831 model and simulation property http://www.biomodels.net/kisao/KISAO#KISAO_0000361 is generalization of http://www.biomodels.net/kisao/KISAO#KISAO_0000359 is similar to http://www.biomodels.net/kisao/KISAO#KISAO_0000246 is hybrid of http://www.biomodels.net/kisao/KISAO#KISAO_0000360 uses http://www.biomodels.net/kisao/KISAO#KISAO_0000245 has characteristic http://www.biomodels.net/kisao/KISAO#KISAO_0000250 is parameter of http://www.biomodels.net/kisao/KISAO#KISAO_0000251 has type http://www.biomodels.net/kisao/KISAO#KISAO_0000259 has parameter http://www.biomodels.net/kisao/KISAO#KISAO_0000268 is characteristic of http://www.biomodels.net/kisao/KISAO#KISAO_0000275 has Runge-Kutta method order http://www.biomodels.net/kisao/KISAO#KISAO_0000359 is similar to http://www.biomodels.net/kisao/KISAO#KISAO_0000360 uses http://www.biomodels.net/kisao/KISAO#KISAO_0000399 is used by