Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/OBI_0002465 age since culture seeding measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum age of culture An age measurement datum that is the result of the measurement of the age of a cell since cultured (the process of seeding cells onto a culture dish). http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module subset ontology An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms. http://purl.obolibrary.org/obo/CHEBI_35341 steroid http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity steroids Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene. http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity http://purl.obolibrary.org/obo/BFO_0000040 material entity molecular entity Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. http://purl.obolibrary.org/obo/CHEBI_3215 bupivacaine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Bupivacaine A racemate composed of equimolar amounts of dextrobupivacaine and levobupivacaine. Used (in the form of its hydrochloride hydrate) as a local anaesthetic. http://purl.obolibrary.org/obo/CHEBI_33250 atom http://purl.obolibrary.org/obo/BFO_0000040 material entity atom A chemical entity constituting the smallest component of an element having the chemical properties of the element. http://purl.obolibrary.org/obo/CHEBI_4717 droperidol http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity 1-{1-[4-(4-fluorophenyl)-4-oxobutyl]-1,2,3,6-tetrahydropyridin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one An organofluorine compound that is haloperidol in which the hydroxy group has been eliminated with the introduction of a double bond in the piperidine ring, and the 4-chlorophenyl group has been replaced by a benzimidazol-2-on-1-yl group. It is used in the management of chemotherapy-induced nausea and vomiting, and in conjunction with an opioid analgesic such as fentanyl to maintain the patient in a calm state of neuroleptanalgesia with indifference to surroundings but still able to cooperate with the surgeon. http://purl.obolibrary.org/obo/CHEBI_6456 lidocaine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity N-(2,6-dimethylphenyl)-N(2),N(2)-diethylglycinamide The monocarboxylic acid amide resulting from the formal condensation of N,N-diethylglycine with 2,6-dimethylaniline. http://purl.obolibrary.org/obo/CHEBI_61219 succinylcholine chloride (anhydrous) http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity 2,2'-[(1,4-dioxobutane-1,4-diyl)bis(oxy)]bis(N,N,N-trimethylethanaminium) dichloride A chloride salt in which the negative charge of the chloride ions is balanced by succinylcholine dications. http://purl.obolibrary.org/obo/OBIB_0000063 internal body temperature measurement assay http://purl.obolibrary.org/obo/OBI_0002140 temperature measurement assay core body temperature A temperature measurement assay to obtain the body temperature of an organism through placement of a thermometer in an internal cavity or organ. http://purl.obolibrary.org/obo/OBIB_0000068 collection packet identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier Kit ID An identifier that refers to a collection packet used in a specimen collection process. http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure http://purl.obolibrary.org/obo/OBI_0000272 protocol SOP A protocol that is a set of step-by-step instructions compiled by an organization for carrying out routine operations. http://purl.obolibrary.org/obo/OBIB_0000073 case report form completion SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure CRF completion protocol A standard operating procedure for properly and completely filling out a case report form. http://purl.obolibrary.org/obo/OBIB_0000085 organization conducting specimen collection from organism http://purl.obolibrary.org/obo/OBI_0000245 organization tissue source site An organization at which the process of collecting a specimen from an organism occurred. http://purl.obolibrary.org/obo/OBIB_0000086 specimen collected with specific collection packet http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism specimen collected with specific kit A specimen from organism that is collected with a collection packet that is designed to collect specimens of a particular type for a particular purpose. http://purl.obolibrary.org/obo/OBIB_0000094 cessation of brain activity death http://purl.obolibrary.org/obo/UBERON_0035944 life-death temporal boundary brain death A life-death temporal boundary marked by the irreversible end of all brain activity (including involuntary activity necessary to sustain life). http://purl.obolibrary.org/obo/OBIB_0000095 cessation of cardiac activity death http://purl.obolibrary.org/obo/UBERON_0035944 life-death temporal boundary cardiac death A life-death temporal boundary marked by the natural cessation of cardiac activity. http://purl.obolibrary.org/obo/OBIB_0000119 left hemicolectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy left colectomy A colectomy that is the surgical removal of the left side of the large intestine. http://purl.obolibrary.org/obo/OBIB_0000121 right hemicolectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy right colectomy A colectomy that involves removing the cecum, the ascending colon, the hepatic flexure (where the ascending colon joins the transverse colon), the first one-third of the transverse colon, and part of the terminal ileum, along with fat and lymph nodes. http://purl.obolibrary.org/obo/OBIB_0000125 low anterior resection http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure LAR A surgical procedure that is done to treat cancer of the rectum in which the part of the rectum containing the cancer is removed. The remaining part of the rectum is reconnected to the colon. http://purl.obolibrary.org/obo/OBIB_0000132 vital sign blood pressure variance early in organ excision http://purl.obolibrary.org/obo/IAO_0000027 data item BP excursions from time of anesthesia induction to 15 minutes post A data item on the duration of blood pressure variances of greater than 20 mmHg from a patient's pre-operative baseline from the time of anesthesia induction to 15 minutes post. http://purl.obolibrary.org/obo/OBIB_0000133 vital sign blood pressure variance late in organ excision http://purl.obolibrary.org/obo/IAO_0000027 data item BP excursions from 15 minutes post anesthesia induction to organ excision A data item on the duration of blood pressure variances of greater than 20 mmHg from a patient's pre-operative baseline from 15 minutes post anesthesia induction to the organ excision. http://purl.obolibrary.org/obo/OBIB_0000142 specimen donor intraoperative blood loss volume measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum intraoperative blood loss of specimen donor A measurement datum of the volume of intraoperative blood loss from the specimen donor. http://purl.obolibrary.org/obo/OBIB_0000143 specimen donor intraoperative blood loss prior to organ excision volume measurement datum http://purl.obolibrary.org/obo/OBIB_0000142 specimen donor intraoperative blood loss volume measurement datum intraoperative blood loss of specimen donor prior to organ excision A specimen donor intraoperative blood loss volume measurement datum obtained prior to organ excision. http://purl.obolibrary.org/obo/OBIB_0000144 specimen donor intraoperative blood loss at end of surgery volume measurement datum http://purl.obolibrary.org/obo/OBIB_0000142 specimen donor intraoperative blood loss volume measurement datum intraoperative blood loss of specimen donor at end of surgery A specimen donor intraoperative blood loss volume measurement datum obtained at the end of surgery. http://purl.obolibrary.org/obo/OBIB_0000145 specimen donor intraoperative urine excreted volume measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum intraoperative urine volume excreted A measurement datum of the volume of intraoperative urine excreted obtained from the specimen donor during surgery. http://purl.obolibrary.org/obo/OBIB_0000146 specimen donor intraoperative urine excreted prior to organ excision volume measurement datum http://purl.obolibrary.org/obo/OBIB_0000145 specimen donor intraoperative urine excreted volume measurement datum intraoperative urine volume excreted of specimen donor prior to organ excision A specimen donor intraoperative urine excreted volume measurement datum obtained during prior to organ excision. http://purl.obolibrary.org/obo/OBIB_0000147 specimen donor intraoperative urine excreted at end of surgery volume measurement datum http://purl.obolibrary.org/obo/OBIB_0000145 specimen donor intraoperative urine excreted volume measurement datum intraoperative urine volume excreted of specimen donor at end of surgery A specimen donor intraoperative urine excreted volume measurement datum obtained at the end of surgery. http://purl.obolibrary.org/obo/OBIB_0000173 left kidney biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy Kidney biopsy (left) A biopsy of the left kidney. http://purl.obolibrary.org/obo/OBIB_0000174 right kidney biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy Kidney biopsy (right) A biopsy of the right kidney. http://purl.obolibrary.org/obo/OBIB_0000175 left kidney mass excision http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Kidney mass excision (left) A surgical procedure to remove a mass (growth or tumor) in the left kidney. http://purl.obolibrary.org/obo/OBIB_0000176 left partial nephrectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephrectomy (partial left) A surgical procedure to remove part of the left kidney. http://purl.obolibrary.org/obo/OBIB_0000177 left radical nephrectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephrectomy (radical left) A surgical procedure to remove the entire left kidney. http://purl.obolibrary.org/obo/OBIB_0000178 left nephroureterectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephroureterectomy (left) A surgical procedure that is minimally invasive to remove a patient's left renal pelvis, kidney, ureter, and bladder cuff. http://purl.obolibrary.org/obo/OBIB_0000179 right kidney mass excision http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Kidney mass excision (right) A surgical procedure to remove a mass (growth or tumor) in the right kidney. http://purl.obolibrary.org/obo/OBIB_0000180 right partial nephrectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephrectomy (partial right) A surgical procedure to remove part of the right kidney. http://purl.obolibrary.org/obo/OBIB_0000181 right radical nephrectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephrectomy (radical right) A surgical procedure to remove the entire right kidney. http://purl.obolibrary.org/obo/OBIB_0000182 right nephroureterectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure Nephroureterectomy (right) A surgical procedure that is minimally invasive to remove a patient's right renal pelvis, kidney, ureter, and bladder cuff. http://purl.obolibrary.org/obo/OBIB_0000183 open surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method open surgery A surgical method in which an incision is made using a scalpel. Open surgery is the traditional type of surgery. http://purl.obolibrary.org/obo/OBIB_0000210 obsolete fine needle biopsy http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class needle biopsy A biopsy that uses a thin, hollow needle to draw cells from a body. http://purl.obolibrary.org/obo/OBIB_0000211 obsolete core needle biopsy http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class core biopsy A biopsy that uses a hollow tube that allows extracting a core of tissue for testing. This type of needle biopsy uses a wider needle than does fine-needle aspiration. http://purl.obolibrary.org/obo/OBIB_0000212 PAXgene fixation reagent http://purl.obolibrary.org/obo/OBI_0000047 processed material PAXgene Tissue FIX A processed material that is a non-carcinogenic, non-cross-linking mixture of different alcohols, acid and a soluble organic compound that rapidly preserves morphology and all bio-molecules. http://purl.obolibrary.org/obo/OBIB_0000213 neutral buffered formalin http://purl.obolibrary.org/obo/OBI_0000047 processed material buffered formalin A processed material that is a mixture of formalin (formaldehyde), phosphates, and water used as a standard fixative for diagnostic preparations. http://purl.obolibrary.org/obo/OBIB_0000214 buffer formula for specimen fixative http://purl.obolibrary.org/obo/OBI_0000272 protocol Fixative formula (buffer) A protocol specifying the buffer formula of the fixative in which tissue specimens are processed. http://purl.obolibrary.org/obo/OBIB_0000217 commercial manufacturer http://purl.obolibrary.org/obo/OBI_0000835 manufacturer commercial source A manufacturer that produces materials to be sold for profit. http://purl.obolibrary.org/obo/OBIB_0000218 in-house manufacturer http://purl.obolibrary.org/obo/OBI_0000835 manufacturer In-house source A manufacturer that produces materials internally for the internal needs of the organization. http://purl.obolibrary.org/obo/OBIB_0000219 recycled buffered formalin condition http://purl.obolibrary.org/obo/OBIB_0000220 buffered formalin condition recycled formalin A buffered formalin condition by virtue of the formalin having undergone a recycling process such as fractional distillation by temperature. http://purl.obolibrary.org/obo/OBIB_0000221 fresh buffered formalin condition http://purl.obolibrary.org/obo/OBIB_0000220 buffered formalin condition fresh formalin A buffered formalin condition by virtue of being newly prepared with formalin that has not been previously used. http://purl.obolibrary.org/obo/OBIB_0000228 operating room technician http://purl.obolibrary.org/obo/OMRSE_00000012 health care provider role surgical technician A health care provider role borne by a person whose duties are to prepare operating rooms, set up equipment and surgical tools, and assist doctors and nurses during surgeries as instructed. http://purl.obolibrary.org/obo/OBIB_0000229 date and time of blood collection http://purl.obolibrary.org/obo/IAO_0000027 data item Date and Time Blood Was Drawn A data item indicating the date and time when a blood specimen was collected. http://purl.obolibrary.org/obo/OBIB_0000230 pre-operative blood specimen collection http://purl.obolibrary.org/obo/OBIB_0000231 blood specimen collection pre-operative blood draw A blood specimen collection that occurs pre-operatively or pre-anesthesia relative to surgery. http://purl.obolibrary.org/obo/OBIB_0000231 blood specimen collection http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism blood draw A collecting specimen from organism that results in a blood specimen. http://purl.obolibrary.org/obo/OBIB_0000233 blood specimen container with EDTA http://purl.obolibrary.org/obo/OBI_0002088 specimen container lavender top tube A specimen container for collecting blood and has ethylenediaminetetraacetic acid (EDTA) as an anticoagulant. http://purl.obolibrary.org/obo/OBIB_0000237 fresh venous needle blood specimen collection http://purl.obolibrary.org/obo/OBIB_0000231 blood specimen collection fresh venous needle stick A blood specimen collection that is performed with a fresh needle inserted into a vein. http://purl.obolibrary.org/obo/OBIB_0000250 conical centrifuge tube identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier Conical centrifuge Tube code An identifier that specifically identifies a particular conical centrifuge tube. http://purl.obolibrary.org/obo/UBERON_0000310 breast http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity mammary region The upper ventral region of the torso of an organism. http://purl.obolibrary.org/obo/UBERON_0035840 esophagogastric junction muscularis mucosa http://purl.obolibrary.org/obo/UBERON_0000064 organ part gastro-esophageal junction muscularis mucosa Muscularis mucosa from the lowest portion of the esophagus, just proximal to the stomach. http://purl.obolibrary.org/obo/UBERON_0035944 life-death temporal boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary time of death A life cycle temporal boundary that marks the end of the life cycle of the organism. http://purl.obolibrary.org/obo/ICO_0000046 act of authorizing http://purl.obolibrary.org/obo/OBI_0000011 planned process permission A planned process of making the decision of the competent authorities in form of a letter, document, or verbal or electronic form, that confirms that somebody has permission to do something or be somewhere, e.g. to realize a given project. http://purl.obolibrary.org/obo/NCIT_C15675 Adjuvant Therapy http://purl.obolibrary.org/obo/NCIT_C16212 Cancer Therapeutic Procedure adjuvant therapy Any therapy that is administered to augment or stimulate other treatment modalities or to minimize or prevent disease recurrence subsequent to the main treatment plan. http://purl.obolibrary.org/obo/OBI_0002136 RNA Integrity Number calculation http://purl.obolibrary.org/obo/OBI_0200000 data transformation RIN calculation A data transformation using the RIN algorithm to generate a quality measure of RNA based on features from an electrophoretic trace. http://purl.obolibrary.org/obo/OBI_0002137 RNA Integrity Number value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification RIN value specification A value specification that specifies the value of the RNA Integrity Number as a real value between 1 (most degraded) and 10 (most intact). http://purl.obolibrary.org/obo/OBI_0002146 HIV antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HIV I/II Ab assay An antigen specific antibodies assay that is meant to detect antibodies that bind to human immunodeficiency virus (HIV) antigens. http://purl.obolibrary.org/obo/OBI_0002147 HIV group O antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HIV I/II Plus O assay An antigen specific antibodies assay that is meant to detect antibodies that bind to human immunodeficiency virus (HIV) group O antigens. http://purl.obolibrary.org/obo/OBI_0002148 surface HBV antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HBsAb assay An antigen specific antibodies assay that is meant to detect antibodies that bind to hepatitis B virus (HBV) surface antigens. http://purl.obolibrary.org/obo/OBI_0002149 core HBV antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HBcAb assay An antigen specific antibodies assay that is meant to detect antibodies that bind to hepatitis B virus (HBV) core antigens. http://purl.obolibrary.org/obo/OBI_0002150 core HBV IgM antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HBcAb-IgM assay An antigen specific antibodies assay that is meant to detectimmunoglobulin M (IgM) antibodies that bind to hepatitis B virus (HBV) core antigens. http://purl.obolibrary.org/obo/OBI_0002151 HCV antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay HCV Ab assay An antigen specific antibodies assay that is meant to detect antibodies that bind to Hepacivirus C (HCV) antigens. http://purl.obolibrary.org/obo/OBI_0002152 EBV IgG antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay EBV IgG Ab assay An antigen specific antibodies assay that is meant to detect immunoglobulin G (IgG) antibodies that bind to Epstein-Barr virus (EBV) antigens. http://purl.obolibrary.org/obo/OBI_0002153 EBV IgM antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay EBV IgM Ab assay An antigen specific antibodies assay that is meant to detect immunoglobulin M (IgM) antibodies that bind to Epstein-Barr virus (EBV) antigens. http://purl.obolibrary.org/obo/OBI_0002154 CMV antibody assay http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay CMV Ab assay An antigen specific antibodies assay that is meant to detect antibodies that bind to cytomegalovirus (CMV) antigens. http://purl.obolibrary.org/obo/OBI_0002155 venereal disease research laboratory test http://purl.obolibrary.org/obo/OBI_0000443 analyte assay VDRL test An analyte assay that is meant to detect general antibodies that react with substances that are produced by cellular damage caused by Treponema pallidum indicating a syphilis infection. VDRL tests require a microscope and can be done on cerebrospinal fluid as well as blood. http://purl.obolibrary.org/obo/OBI_0002156 rapid plasma reagin test http://purl.obolibrary.org/obo/OBI_0000443 analyte assay RPR assay An analyte assay that is meant to detect with the aid of carbon or charcoal particles general antibodies that react with substances that are produced by cellular damage caused by Treponema pallidum indicating a syphilis infection. RPR tests can be done without a microscope. http://purl.obolibrary.org/obo/OBI_0002157 HBV surface antigen assay http://purl.obolibrary.org/obo/OBI_0000443 analyte assay HBsAg assay An analyte assay that is meant to detect hepatitis B virus (HBV) surface antigens. http://purl.obolibrary.org/obo/OBI_0002158 HIV-1 nucleic acid testing http://purl.obolibrary.org/obo/OBI_0000443 analyte assay HIV-1 NAT An analyte assay that is meant to detect human immunodeficiency virus (HIV-1) nucleic acids. http://purl.obolibrary.org/obo/OBI_0002159 HCV nucleic acid testing http://purl.obolibrary.org/obo/OBI_0000443 analyte assay HCV NAT An analyte assay that is meant to detect hepatitis C virus (HCV) nucleic acids. http://purl.obolibrary.org/obo/UBERON_0000002 uterine cervix http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity uterine cervix Lower, narrow portion of the uterus where it joins with the top end of the vagina. http://purl.obolibrary.org/obo/UBERON_0000473 testis http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity gonad of male reproductive system A gonad of a male animal. A gonad produces and releases sperm. http://purl.obolibrary.org/obo/UBERON_0000947 aorta http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity trunk of systemic arterial tree The main trunk of the systemic arterial system that carries blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation. http://purl.obolibrary.org/obo/UBERON_0001037 strand of hair http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity hair A filament, mostly protein, that grows from follicles found in the dermis[WP]. http://purl.obolibrary.org/obo/UBERON_0001150 body of pancreas http://purl.obolibrary.org/obo/UBERON_0000064 organ part pancreatic body The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]. http://purl.obolibrary.org/obo/UBERON_0001156 ascending colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part colon ascendens Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]. http://purl.obolibrary.org/obo/UBERON_0001157 transverse colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part colon transversum The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]. http://purl.obolibrary.org/obo/UBERON_0001161 body of stomach http://purl.obolibrary.org/obo/UBERON_0000064 organ part stomach body The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]. http://purl.obolibrary.org/obo/UBERON_0001621 coronary artery http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity coronary arterial tree An artery that supplies the myocardium. http://purl.obolibrary.org/obo/UBERON_0001728 nasopharynx http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity rhinopharynx The section of the pharynx that lies above the soft palate. http://purl.obolibrary.org/obo/UBERON_0001729 oropharynx http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity oral part of pharynx The portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis. http://purl.obolibrary.org/obo/UBERON_0001797 vitreous humor http://purl.obolibrary.org/obo/UBERON_0000463 organism substance whole portion of vitreous humor A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina. http://purl.obolibrary.org/obo/UBERON_0001835 lower lip http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity lower jaw lip Lip that covers the lower portion of the mouth.[TAO]. http://purl.obolibrary.org/obo/UBERON_0001987 placenta http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity eutherian placenta Organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell. http://purl.obolibrary.org/obo/UBERON_0002037 cerebellum http://purl.obolibrary.org/obo/UBERON_0000481 multi-tissue structure epencephalon-1 Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]. http://purl.obolibrary.org/obo/UBERON_0002369 adrenal gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity glandula suprarenalis Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. http://purl.obolibrary.org/obo/UBERON_0002371 bone marrow http://purl.obolibrary.org/obo/UBERON_0000479 tissue medulla ossium The soft tissue that fills the cavities of bones. http://purl.obolibrary.org/obo/UBERON_0007650 esophagogastric junction http://purl.obolibrary.org/obo/UBERON_0000064 organ part cardioesophageal junction The junction between the esophagus and the stomach epithelium. http://purl.obolibrary.org/obo/UBERON_0022277 hepatic flexure of colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part right colic flexure Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans. http://purl.obolibrary.org/obo/CLO_0000019 immortal cell line cell http://purl.obolibrary.org/obo/CLO_0000001 cell line cell permanent cell line cell A cell line cell that is expected to be capable of an unlimited number of divisions, and is thus able to support indefinite propagation in vitro as part of an immortal cell line. http://purl.obolibrary.org/obo/CLO_0009828 immortal cell line http://purl.obolibrary.org/obo/CLO_0000031 cell line permanent cell line A cell line that is expected to be capable of indefinite propagation in an vitro culture. http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity goal specification A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved. http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity data An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. http://purl.obolibrary.org/obo/IAO_0000132 lot number http://purl.obolibrary.org/obo/IAO_0000028 symbol batch number A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example, a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern of other information objects, such as bar codes, numerals, or patterns of dots. http://purl.obolibrary.org/obo/IAO_0000300 textual entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity text A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc. http://purl.obolibrary.org/obo/IAO_0000577 centrally registered identifier symbol http://purl.obolibrary.org/obo/IAO_0000028 symbol CRID symbol A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry. http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier http://purl.obolibrary.org/obo/IAO_0000030 information content entity CRID An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs. http://purl.obolibrary.org/obo/IAO_0000579 centrally registered identifier registry http://purl.obolibrary.org/obo/IAO_0000100 data set CRID registry A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process. http://purl.obolibrary.org/obo/OBI_0000014 regulator role http://purl.obolibrary.org/obo/OBI_0000017 regulatory role regulator a regulatory role involved with making and/or enforcing relevant legislation and governmental orders http://purl.obolibrary.org/obo/OBI_0000018 material supplier role http://purl.obolibrary.org/obo/OBI_0000947 service provider role material provider role a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation. http://purl.obolibrary.org/obo/OBI_0000070 assay http://purl.obolibrary.org/obo/OBI_0000011 planned process scientific observation A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. http://purl.obolibrary.org/obo/OBI_0000086 reagent role http://purl.obolibrary.org/obo/BFO_0000023 role reagent A role inhering in a biological or chemical entity that is intended to be applied in a scientific technique to participate (or have molecular components that participate) in a chemical reaction that facilitates the generation of data about some entity distinct from the bearer, or the generation of some specified material output distinct from the bearer. http://purl.obolibrary.org/obo/OBI_0000093 patient role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role patient a role which inheres in a person and is realized by the process of being under the care of a physician or health care provider http://purl.obolibrary.org/obo/OBI_0000094 material processing http://purl.obolibrary.org/obo/OBI_0000011 planned process material transformation A planned process which results in physical changes in a specified input material http://purl.obolibrary.org/obo/OBI_0000102 responsible party role http://purl.obolibrary.org/obo/OBI_0000202 investigation agent role responsible party a study personnel role played by a party who is accountable for the execution of a study component and can make decisions about the conduct of the study http://purl.obolibrary.org/obo/OBI_0000103 principal investigator role http://purl.obolibrary.org/obo/OBI_0000102 responsible party role principal investigator a responsible party role played by a person responsible for the overall conduct of a study http://purl.obolibrary.org/obo/OBI_0000116 worker role http://purl.obolibrary.org/obo/OBI_0000202 investigation agent role worker a personnel role played by a party who executes a component of the study plan; this can occur before, during, after or outside the study timeline http://purl.obolibrary.org/obo/OBI_0000202 investigation agent role http://purl.obolibrary.org/obo/BFO_0000023 role investigator A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing. http://purl.obolibrary.org/obo/OBI_0000398 image creation device http://purl.obolibrary.org/obo/OBI_0000832 measurement device image acquisition device An image creation device is a device which captures a digitized image of an object http://purl.obolibrary.org/obo/OBI_0000423 extract http://purl.obolibrary.org/obo/OBI_0000047 processed material extracted material an extract is a material entity which results from an extraction process http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification artifact creation objective an objective specifiction that creates an specific output object from input materials. http://purl.obolibrary.org/obo/OBI_0000659 specimen collection process http://purl.obolibrary.org/obo/OBI_0000011 planned process specimen collection A planned process with the objective of collecting a specimen. http://purl.obolibrary.org/obo/OBI_0000679 average value http://purl.obolibrary.org/obo/IAO_0000027 data item arithmetic mean A data item that is produced as the output of an averaging data transformation and represents the average value of the input data. http://purl.obolibrary.org/obo/OBI_0000747 material sample http://purl.obolibrary.org/obo/OBI_0100051 specimen sample population A material entity that has the material sample role http://purl.obolibrary.org/obo/OBI_0000836 test tube http://purl.obolibrary.org/obo/OBI_0000967 container sample tube A test tube is a device consisting of a glass or plastic tubing, open at the top, usually with a rounded U-shaped bottom which has the function to contain material http://purl.obolibrary.org/obo/OBI_0000968 device http://purl.obolibrary.org/obo/OBI_0000047 processed material instrument A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. http://purl.obolibrary.org/obo/OBI_0000982 computed tomography scanner http://purl.obolibrary.org/obo/OBI_0000398 image creation device X-ray computed tomography scanner An image acquisition device that generates a three-dimensional image of the inside of an object from a large series of two-dimensional X-ray images taken around a single axis of rotation. http://purl.obolibrary.org/obo/OBI_0001007 image creation http://purl.obolibrary.org/obo/OBI_0000011 planned process image acquisition A planned process that captures an image of an object. http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism http://purl.obolibrary.org/obo/OBI_0100051 specimen tissue specimen A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm). http://purl.obolibrary.org/obo/OBI_0001619 specimen collection time measurement datum http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum collection date A time measurement datum that is the measure of the time when the specimens are collected. http://purl.obolibrary.org/obo/OBI_0001755 selection criterion http://purl.obolibrary.org/obo/IAO_0000033 directive information entity selection rule A directive information entity which defines and states a principle of standard by which selection process may take place. http://purl.obolibrary.org/obo/OBI_0001905 secondary cultured cell population http://purl.obolibrary.org/obo/OBI_0100060 cultured cell population secondary cell culture sample A cultured cell population that is derived through one or more passages in culture. http://purl.obolibrary.org/obo/OBI_0001928 selection http://purl.obolibrary.org/obo/OBI_0000011 planned process selection process A planned process which results in the creation of group of entity from a larger group by the application of predefined criteria. http://purl.obolibrary.org/obo/OBI_0002077 specimens derived from shared ancestor http://purl.obolibrary.org/obo/OBI_0002076 collection of specimens specimen family A collection of specimens derived from one common specimen via one or more material processing process(es). http://purl.obolibrary.org/obo/OBI_0002503 feces specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism stool specimen A specimen that is derived from feces. http://purl.obolibrary.org/obo/OBI_0002504 digestive system fluid or secretion specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism gastric fluid specimen A specimen that is derived from digestive system fluid or secretion. http://purl.obolibrary.org/obo/OBI_0002511 vitreous humor specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism vitreous fluid specimen A specimen that is derived from vireous humor. http://purl.obolibrary.org/obo/OBI_0002521 renal medulla specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism kidney medulla specimen A specimen that is derived from renal medulla. http://purl.obolibrary.org/obo/OBI_0002523 breast specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism mammary tissue specimen A specimen that is derived from breast. http://purl.obolibrary.org/obo/OBI_0002526 skin of body specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism skin specimen A specimen that is derived from skin. http://purl.obolibrary.org/obo/OBI_0002531 cortex of kidney specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism kidney cortex specimen A specimen that is derived from cortex of kidney. http://purl.obolibrary.org/obo/OBI_0002535 esophagus muscularis mucosa specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism esophagus muscularis specimen A specimen that is derived from esophagus muscularis mucosa. http://purl.obolibrary.org/obo/OBI_0002536 cerebral cortex specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism brain cortex specimen A specimen that is derived from cerebral cortex. http://purl.obolibrary.org/obo/OBI_0002538 cerebellum specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism brain cerebellum specimen A specimen that is derived from cerebellum. http://purl.obolibrary.org/obo/OBI_0100016 blood plasma specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen plasma a material entity which corresponds to the liquid component of blood, in which the blood cells are suspended. http://purl.obolibrary.org/obo/OBI_0100060 cultured cell population http://purl.obolibrary.org/obo/OBI_0000047 processed material cell culture sample A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history. http://purl.obolibrary.org/obo/OBI_0100067 bronchial alveolar lavage http://purl.obolibrary.org/obo/OBI_0000953 processed specimen BAL Group of biomaterials present in the bronchial aveolar space of an organism which are collected through lavage including the reagents used to for the lavage process, organisms, cells, and cellular secretions present in the bronchial aveolar space. http://purl.obolibrary.org/obo/OBI_0200000 data transformation http://purl.obolibrary.org/obo/OBI_0000011 planned process data processing A planned process that produces output data from input data. http://purl.obolibrary.org/obo/OBI_0500000 study design http://purl.obolibrary.org/obo/IAO_0000104 plan specification experimental design A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. http://purl.obolibrary.org/obo/OBI_0500026 eligibility criterion http://purl.obolibrary.org/obo/OBI_0001755 selection criterion eligibility rule an eligibility criterion (rule) is_a selection criterion which defines and states the requirements (positive or negative) for an entity to be considered as suitable for a given task or participation in a process. http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion http://purl.obolibrary.org/obo/OBI_0500026 eligibility criterion inclusion rule an inclusion criterion (rule) is_a *eligibility criterion* which defines and states a condition which, if met, makes an entity suitable for a given task or participation in a given process. For instance, in a study protocol, inclusion criteria indicate the conditions that prospective subjects MUST meet to be eligible for participation in a study. http://purl.obolibrary.org/obo/OBI_0600016 pooling specimens http://purl.obolibrary.org/obo/OBI_0000652 material combination sample pooling physical combination of several instances of like material http://purl.obolibrary.org/obo/OBI_0600018 material portioning http://purl.obolibrary.org/obo/OBI_0600014 material component separation apportioning a material processing in which the input substance is partitioned into a number of portions that are similar in composition. http://purl.obolibrary.org/obo/OBI_0600037 cell culture splitting http://purl.obolibrary.org/obo/OBI_0600014 material component separation cell culture passaging The act of taking part of a homogeneous cell culture and creating one or more additional separate cultures of similar qualities. input: cell_culture, output cell_culture min cardinality 2. part of cell culturing http://purl.obolibrary.org/obo/OBI_0600038 addition of molecular label http://purl.obolibrary.org/obo/OBI_0000094 material processing labeling a material processing technique intended to add a molecular label to some input material entity, to allow detection of the molecular target of this label in a detection of molecular label assay http://purl.obolibrary.org/obo/OBI_1110087 donor http://purl.obolibrary.org/obo/BFO_0000023 role donor role A role which inheres in an organism or part thereof from which any part including cell, organ or tissue is removed with the intention that the donated part will be placed into another organism and/or cultured in vitro. http://purl.obolibrary.org/obo/IAO_0020000 identifier http://purl.obolibrary.org/obo/IAO_0000030 information content entity proper name An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity. http://purl.obolibrary.org/obo/ICO_0000001 informed consent form http://purl.obolibrary.org/obo/IAO_0000310 document informed consent document A document that explains all relevant information to assist a human being in understanding the expectations and requirements of participation in a process, and is an instrument in obtaining consent and, after having obtained consent, is a record that such a consent has occurred. http://purl.obolibrary.org/obo/OBIB_0000048 nicotine material http://purl.obolibrary.org/obo/OBI_0000047 processed material nicotine product A processed material that contains nicotine. http://purl.obolibrary.org/obo/OBIB_0000057 tobacco material http://purl.obolibrary.org/obo/OBI_0000047 processed material tobacco product A processed material that is made from tobacco. Typically, tobacco material is meant to be used as a source of nicotine as tobacco contains a higher concentration of nicotine than most other plants. http://purl.obolibrary.org/obo/OBIB_0000000 biobank description in english http://purl.obolibrary.org/obo/IAO_0000300 textual entity biobank description A textual entity providing information about a biobank and that is written in English. http://purl.obolibrary.org/obo/OBIB_0000270 date of specimen transport http://purl.obolibrary.org/obo/IAO_0000027 data item date of specimen shipment A data item indicating the calendar date when a specimen was transported to another institution. http://purl.obolibrary.org/obo/OBIB_0000271 time of specimen transport http://purl.obolibrary.org/obo/IAO_0000027 data item time of specimen shipment A data item indicating the time when a specimen was transported to another institution. http://purl.obolibrary.org/obo/OBIB_0000272 specimen transporting organization http://purl.obolibrary.org/obo/BFO_0000023 role specimen shipping organization A role borne by an organization that is the provider of a specimen that is transported to another organization. http://purl.obolibrary.org/obo/OBIB_0000274 name of person responsible for specimen transport http://purl.obolibrary.org/obo/IAO_0020015 personal name name of person responsible for specimen shipment A personal name that designates the person who is responsible for the transport of a specimen to another organization. http://purl.obolibrary.org/obo/OBIB_0000275 name of IATA-trained person verifying specimen transport http://purl.obolibrary.org/obo/IAO_0020015 personal name name of IATA-trained person verifying specimen shipment A personal name that designates the person who verified the specimen transport was according to best practice, international standards, and industry regulations as trained by the IATA. http://purl.obolibrary.org/obo/OBIB_0000276 date of receiving specimen transport http://purl.obolibrary.org/obo/IAO_0000027 data item date of receiving specimen shipment A data item indicating the calendar date when a specimen was received after transport from another institution. http://purl.obolibrary.org/obo/OBIB_0000277 time of receiving specimen transport http://purl.obolibrary.org/obo/IAO_0000027 data item time of receiving specimen shipment A data item indicating the time when a specimen was received after transport from another institution. http://purl.obolibrary.org/obo/OBIB_0000278 temperature of specimen collection packet at time of receipt http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum temperature of interior kit at time of receipt A scalar measurement datum that is the output of a temperature measurement assay performed on a collection packet when it is received with a specimen. http://purl.obolibrary.org/obo/OBIB_0000318 name of specimen slide preparation technician http://purl.obolibrary.org/obo/IAO_0020015 personal name Slide Prep Technician Name A personal name that designates the person who performed a specimen slide preparation. http://purl.obolibrary.org/obo/OBIB_0000323 description of glass slide charge http://purl.obolibrary.org/obo/IAO_0000300 textual entity Slide Charge A textual entity that describes the carge on a glass slide. http://purl.obolibrary.org/obo/OBIB_0000324 charged glass slide indicator http://purl.obolibrary.org/obo/IAO_0000030 information content entity charged slide An information content entity that indicates that a glass slide has been positively charged. http://purl.obolibrary.org/obo/OBIB_0000325 uncharged glass slide indicator http://purl.obolibrary.org/obo/IAO_0000030 information content entity uncharged slide An information content entity that indicates that a glass slide has not been positively charged. http://purl.obolibrary.org/obo/OBIB_0000337 FFPE tissue section H&E deparaffinization protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol H&E deparaffinization method A protocol describing the deparaffinization method used during the hematoxylin and eosin (H&E) stained slide preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000338 FFPE tissue section H&E staining protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol H&E staining method A protocol describing the staining method used during the hematoxylin and eosin (H&E) stained slide preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000339 FFPE tissue section H&E clearing protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol H&E clearing method A protocol describing the clearing method used during the hematoxylin and eosin (H&E) stained slide preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000340 FFPE tissue section H&E cover slip protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol H&E cover slipping method A protocol describing the method for applying a cover slip used during the hematoxylin and eosin (H&E) stained slide preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000350 manager of human research protocol requirements role http://purl.obolibrary.org/obo/BFO_0000023 role Consent or Research Analyst/Coordinator role A role borne by personnel responsible for managing human research protocol requirements including but not limited to screening, obtaining authorization, consenting and/or enrollment activities. http://purl.obolibrary.org/obo/OBIB_0000355 human brain biobank http://purl.obolibrary.org/obo/OBIB_0000616 biobank brain bank A biobank that focuses on the special requirements of the human brain with regards to preservation, handling, and analysis. http://purl.obolibrary.org/obo/OBIB_0000356 central biobank http://purl.obolibrary.org/obo/OBIB_0000616 biobank Central Biospecimen Repository A biobank which receives its specimens primarily/exclusively from tissue source sites.� Activities include receipt, some processing, production of slides/images of the tissue, storage, and retrieval/shipping of materials on-demand. http://purl.obolibrary.org/obo/OBIB_0000357 laboratory, data analysis, and coordinating center for human specimens http://vivoweb.org/ontology/core#Laboratory Laboratory LDACC A laboratory that specializes in acquiring human tissues and analyzing components such as DNA and RNA from them. http://purl.obolibrary.org/obo/OBIB_0000358 pathology research center http://vivoweb.org/ontology/core#Laboratory Laboratory PRC A laboratory that performs a rigorous review of images of tissue specimens by a group of senior pathologists not involved in the specimen collection typically to evaluate and characterize the tissue (e.g., % necrosis). http://purl.obolibrary.org/obo/OBIB_0000360 collection packet component ID http://purl.obolibrary.org/obo/IAO_0020000 identifier kit component ID An identifier that specifically identifies a particular component of a collection packet. http://purl.obolibrary.org/obo/OBIB_0000376 FFPE freezing protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol FFPE freezing method A protocol for the freezing step of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000387 name of submitter of pathology case summary report. http://purl.obolibrary.org/obo/IAO_0020015 personal name name of submitting pathologist A personal name that designates the person who was the submitter of a pathology case summary report. http://purl.obolibrary.org/obo/OBIB_0000389 name of reviewer of pathology case summary report. http://purl.obolibrary.org/obo/IAO_0020015 personal name name of reviewing pathologist A personal name that designates the person who served as the reviewer for quality assurance purposes of a pathology case summary report. http://purl.obolibrary.org/obo/OBIB_0000420 resected tissue specimen mass measurement datum http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum resected tissue weight A mass measurement datum that is the output of an assay to measure the weight of a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000427 ink used for marking surgical margin http://purl.obolibrary.org/obo/OBI_0000047 processed material pathology ink A processed material that is used to mark the margin of a surgical excision of a resected tissue. It is used to evaluate whether the margin is free of tumor tissue. http://purl.obolibrary.org/obo/OBIB_0000441 specimen collection quality review comment http://purl.obolibrary.org/obo/IAO_0000300 textual entity case quality review comment A textual entity that states information relevant to a review to determine if requirements were met for a specimen collection from a donor. http://purl.obolibrary.org/obo/OBIB_0000448 specimen donor clinical data entry was completed http://purl.obolibrary.org/obo/IAO_0000030 information content entity case clinical data entry was completed An information content entity that is an indicator of whether clinical data entry was completed for a specimen donor. http://purl.obolibrary.org/obo/OBIB_0000450 all requirements for an investigation are met enabling release of specimen for shipment. http://purl.obolibrary.org/obo/IAO_0000030 information content entity case meets all requirements for an investigation and is released for shipment. An information content entity that is an indicator of whether all requirements for an investigation were met such that a specimen from a particular donor is released for shipment. http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. http://purl.obolibrary.org/obo/IAO_0000030 information content entity case was stopped An information content entity that is an indicator of whether activity related to a particular specimen donor was stopped. http://purl.obolibrary.org/obo/OBIB_0000452 activity related to a particular specimen donor was stopped because not enough blood collected http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. case was stopped because not enough blood collected An activity related to a particular specimen donor was stopped that is because there was not enough blood collected. http://purl.obolibrary.org/obo/OBIB_0000453 activity related to a particular specimen donor was stopped because not enough tissue http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. case was stopped because not enough tissue An activity related to a particular specimen donor was stopped that is because there was not enough tissue. http://purl.obolibrary.org/obo/OBIB_0000454 activity related to a particular specimen donor was stopped because tissue was too necrotic http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. case was stopped because tissue was too necrotic An activity related to a particular specimen donor was stopped that is because the tissue was too necrotic. http://purl.obolibrary.org/obo/OBIB_0000455 activity related to a particular specimen donor was stopped because tissue was benign http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. case was stopped because tissue was benign An activity related to a particular specimen donor was stopped that is because the tissue was benign. http://purl.obolibrary.org/obo/OBIB_0000456 activity related to a particular specimen donor was stopped because tissue was not released to a biobank http://purl.obolibrary.org/obo/OBIB_0000451 activity related to a particular specimen donor was stopped. case was stopped because tissue was not released to biobank An activity related to a particular specimen donor was stopped that is because the tissue was not released to a biobank. http://purl.obolibrary.org/obo/OBIB_0000458 research authorization obtainer role for post mortem donation of specimens from a legally authorized representative http://purl.obolibrary.org/obo/BFO_0000023 role obtainer of research authorization for post-mortem specimen donation A role borne by a person who approaches a person's legal representative and informs them of key facts about potential risks and benefits, and asks them for authorization for post-mortem specimen donation for general research for the person they legally represent. http://purl.obolibrary.org/obo/OBIB_0000461 research authorization documentation for post mortem specimen donation that is affirmative http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation agreed to research authorization for post mortem specimen donation A research authorization documentation for post mortem specimen donation establishing agreement for post-mortem donation and use in general research. http://purl.obolibrary.org/obo/OBIB_0000462 research authorization documentation for post mortem specimen donation that is negative http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused research authorization documentation for post mortem specimen donation A research authorization documentation for post mortem specimen donation establishing the lack of agreement for post-mortem donation and use in general research. http://purl.obolibrary.org/obo/OBIB_0000463 research authorization for post mortem specimen donation not obtained due to religious reasons http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused due to religious reasons A research authorization documentation for post mortem specimen donation in which the reason authorization was not obtained was due to due to religious reasons. http://purl.obolibrary.org/obo/OBIB_0000464 research authorization for post mortem specimen donation not obtained due to surgeon's recommendation http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused due to surgeon's recommendation A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the donors surgeon did not recommend it. http://purl.obolibrary.org/obo/OBIB_0000465 research authorization for post mortem specimen donation not obtained because legally authorized representative felt pressured http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative felt pressured A research authorization documentation for post mortem specimen donation because the legally authorized representative felt pressured into making a decision. http://purl.obolibrary.org/obo/OBIB_0000466 research authorization for post mortem specimen donation not obtained because legally authorized representative felt too distraught http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative too distraught A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative felt too distraught. http://purl.obolibrary.org/obo/OBIB_0000467 research authorization for post mortem specimen donation not obtained because legally authorized representative needed more time to make a decision http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative needed more time to make a decision A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative needed more time to make a decision. http://purl.obolibrary.org/obo/OBIB_0000468 research authorization for post mortem specimen donation not obtained because legally authorized representative was uncomfortable with the risks http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative was uncomfortable with the risks A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative was uncomfortable with the risks of the request. http://purl.obolibrary.org/obo/OBIB_0000469 research authorization for post mortem specimen donation not obtained because legally authorized representative was afraid the decision might affect the surgery plans of donor http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative was afraid the decision would affect surgery plans A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative was afraid the decision might affect the surgery plans for the donor. http://purl.obolibrary.org/obo/OBIB_0000470 research authorization for post mortem specimen donation not obtained because legally authorized representative did not agree with the activity of biobanking http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative did not agree with the activity of biobanking. A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative did not agree with the activity of biobanking. http://purl.obolibrary.org/obo/OBIB_0000471 research authorization for post mortem specimen donation not obtained because legally authorized representative did not show up to the appointment as scheduled http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation refused because legally authorized representative did not show up to the appointment as scheduled. A research authorization documentation for post mortem specimen donation in which authorization was not obtained because the the legally authorized representative did not show up to the appointment as scheduled. http://purl.obolibrary.org/obo/OBIB_0000472 date of research protocol approval as determined by an institutional review board http://purl.obolibrary.org/obo/IAO_0000027 data item IRB approval date A data item that indicates the calendar date on which a research protocol was approved by an Institutional Review Board related to where the research will take place. http://purl.obolibrary.org/obo/OBIB_0000473 date of research protocol expiration as determined by an institutional review board http://purl.obolibrary.org/obo/IAO_0000027 data item IRB expiration date A data item that indicates the calendar date on which a research protocol expires and becomes inactive as determined by an Institutional Review Board. http://purl.obolibrary.org/obo/OBIB_0000474 identification number of a protocol at a particular site http://purl.obolibrary.org/obo/IAO_0000577 centrally registered identifier symbol protocol number at a site An centrally registered identifier symbol assigned by an Institutional Review Board (IRB) that identifies a particular protocol at a given site. http://purl.obolibrary.org/obo/OBIB_0000476 date of research authorization verification http://purl.obolibrary.org/obo/IAO_0000027 data item research authorization verification date A data item that indicates the calendar date on which the receipt of the research authorization was verified by study personnel. http://purl.obolibrary.org/obo/OBIB_0000477 name of person screening specimen donors http://purl.obolibrary.org/obo/IAO_0020015 personal name specimen donor screener A personal name that designates who performed the screening of a potential specimen donor for a research study. http://purl.obolibrary.org/obo/OBIB_0000478 name of person obtaining authorization from legally authorized representative for post-mortem specimen donation http://purl.obolibrary.org/obo/IAO_0020015 personal name Research authorization obtainer for post-mortem specimen donation A personal name of an individual with research obtainer role who approaches a person's legal representative and informs them of key facts about potential risks and benefits, and asks them for authorization for post-mortem specimen donation for research for the person they legally represent. http://purl.obolibrary.org/obo/OBIB_0000479 date on which research authorization was obtained from legally authorized representative http://purl.obolibrary.org/obo/IAO_0000027 data item Research authorization date A data item that indicates the calendar date on which a research authorization was obtained from a specimen donor's legally authorized representative. http://purl.obolibrary.org/obo/OBIB_0000480 identifier for legally authorized representative http://purl.obolibrary.org/obo/IAO_0020000 identifier legal representative identifier An identifier that uniquely identifies a particular legally authorized representative in a research study. http://purl.obolibrary.org/obo/OBIB_0000482 specimen donor's date of birth http://www.ebi.ac.uk/efo/EFO_0004950 date of birth donor's date of birth A date of birth that signifies the calendar date on which a particular donor of a specimen was born. http://purl.obolibrary.org/obo/OBIB_0000483 donor's biological sex http://purl.obolibrary.org/obo/PATO_0000047 biological sex donor's gender Biological sex of the person who bears the role of donor. http://purl.obolibrary.org/obo/OBIB_0000486 indicator of whether specimen donor has reached the age of majority http://purl.obolibrary.org/obo/IAO_0000030 information content entity age of majority indicator An Information content entity that indicates whether the specimen donor has reached the age of majority as defined by the appropriate regulation. http://purl.obolibrary.org/obo/OBIB_0000487 comments related to research authorization process http://purl.obolibrary.org/obo/IAO_0000300 textual entity research authorization comments A textual entity that provides additional information that may be relevant to the research authorization verification process. http://purl.obolibrary.org/obo/OBIB_0000488 willingness to be contacted for a research study http://purl.obolibrary.org/obo/IAO_0000030 information content entity recontact indicator An information content entity that signifies the willingness of an individual to be contacted for a research study. http://purl.obolibrary.org/obo/OBIB_0000489 agreement to a specified research addendum http://purl.obolibrary.org/obo/ICO_0000075 obsolete authorization document research addendum authorization An authorization documentation in which a legally authorized individual agrees to a specific research addendum for the person they represent. http://purl.obolibrary.org/obo/OBIB_0000490 authorization documentation for postmortem specimen donation for a specified purpose http://purl.obolibrary.org/obo/ICO_0000075 obsolete authorization document authorization for anatomical gift An authorization documentation for postmortem specimen donation in which specimens are to be used for a specified purpose (e.g., transplantation, research, education). http://purl.obolibrary.org/obo/OBIB_0000491 authorization for postmortem specimen donation for transplantation purposes only http://purl.obolibrary.org/obo/OBIB_0000490 authorization documentation for postmortem specimen donation for a specified purpose tissue donation for transplant only An authorization documentation for postmortem specimen donation for a specified purpose which is solely for the purpose of transplantation to another person or persons. http://purl.obolibrary.org/obo/OBIB_0000492 authorization for postmortem specimen donation for transplantation and research http://purl.obolibrary.org/obo/OBIB_0000490 authorization documentation for postmortem specimen donation for a specified purpose tissue donation for transplant and research An authorization documentation for postmortem specimen donation for a specified purpose which is for transplantation, research, education and the advancement of science. http://purl.obolibrary.org/obo/OBIB_0000494 limitations on research authorization for use of donated specimens http://purl.obolibrary.org/obo/OBIB_0000490 authorization documentation for postmortem specimen donation for a specified purpose tissue use limitations An authorization documentation for postmortem specimen donation in which authorization includes specific limitations or additional information related to the use of tissue for research. http://purl.obolibrary.org/obo/OBIB_0000523 intrauterine device-based hormonal birth control method http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method IUD-based hormonal birth control method A birth control method that involves the use of an intrauterine device (IUD) to deliver hormones. http://purl.obolibrary.org/obo/OBIB_0000607 indication of time in jail http://purl.obolibrary.org/obo/IAO_0000030 information content entity indication of jail time An information content entity in which there is an indication of whether an individual spent more than 72 hours in a correction/detention center in the recent past. http://purl.obolibrary.org/obo/CHEBI_119915 fentanyl http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide A monocarboxylic acid amide resulting from the formal condensation of the aryl amino group of N-phenyl-1-(2-phenylethyl)piperidin-4-amine with propanoic acid. http://purl.obolibrary.org/obo/CHEBI_38867 anaesthetic http://purl.obolibrary.org/obo/OGMS_0000148 medication role anaesthetic Substance which produces loss of feeling or sensation. http://purl.obolibrary.org/obo/CHEBI_16236 ethanol http://purl.obolibrary.org/obo/CHEBI_30879 alcohol ethanol A primary alcohol that is ethane in which one of the hydrogens is substituted by a hydroxy group. http://purl.obolibrary.org/obo/CHEBI_16842 formaldehyde http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity formaldehyde An aldehyde resulting from the formal oxidation of methanol. http://purl.obolibrary.org/obo/CHEBI_16991 deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid deoxyribonucleic acids High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms. http://purl.obolibrary.org/obo/CHEBI_17045 dinitrogen oxide http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity oxidodinitrogen(N--N) A nitrogen oxide consisting of linear unsymmetrical molecules with formula N2O. While it is the most used gaseous anaesthetic in the world, its major commercial use, due to its solubility under pressure in vegetable fats combined with its non-toxicity in low concentrations, is as an aerosol spray propellant and aerating agent for canisters of 'whipped' cream. http://purl.obolibrary.org/obo/CHEBI_17303 morphine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Morphine A morphinane alkaloid that is a highly potent opiate analgesic psychoactive drug. Morphine acts directly on the central nervous system (CNS) to relieve pain but has a high potential for addiction, with tolerance and both physical and psychological dependence developing rapidly. Morphine is the most abundant opiate found in Papaver somniferum (the opium poppy). http://purl.obolibrary.org/obo/CHEBI_30879 alcohol http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity alcohols A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom. http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule nucleic acids A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid. http://purl.obolibrary.org/obo/CHEBI_6121 ketamine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Ketamine A member of the class of cyclohexanones in which one of the hydrogens at position 2 is substituted by a 2-chlorophenyl group, while the other is substituted by a methylamino group. http://purl.obolibrary.org/obo/CHEBI_42191 EDTA(4-) http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity (ethane-1,2-diyldinitrilo)tetraacetate A tetracarboxylic acid anion formed by deprotonation of all four carboxy groups in ethylenediaminetetraacetic acid (EDTA). http://purl.obolibrary.org/obo/CHEBI_7907 pancuronium http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity 3alpha,17beta-diacetoxy-2beta,16beta-bis(1-methylpiperidinium-1-yl)-5alpha-androstane A steroid ester in which a 5alpha-androstane skeleton is C-3alpha- and C-17beta-disubstituted with acetoxy groups and 2beta- and 16beta-disubstituted with 1-methylpiperidinium-1-yl groups. It is a non-depolarizing curare-mimetic muscle relaxant. http://purl.obolibrary.org/obo/CHEBI_6834 methohexital sodium http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity sodium 5-(hex-3-yn-2-yl)-1-methyl-4,6-dioxo-5-(prop-2-en-1-yl)-1,4,5,6-tetrahydropyrimidin-2-olate The sodium salt of methohexital. http://purl.obolibrary.org/obo/CHEBI_8776 ranitidine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity (E)-N-{2-[({5-[(dimethylamino)methyl]-2-furyl}methyl)sulfanyl]ethyl}-N'-methyl-2-nitroethene-1,1-diamine A member of the class of furans used to treat peptic ulcer disease (PUD) and gastroesophageal reflux disease. http://purl.obolibrary.org/obo/CHEBI_9939 vecuronium http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity (2beta,3alpha,5alpha,16beta,17beta)-3,17-diacetoxy-16-(1-methylpiperidinium-1-yl)-2-(piperidin-1-yl)androstane A 5alpha-androstane compound having 3alpha-acetoxy-, 17beta-acetoxy-, 2beta-piperidino- and 16beta-N-methylpiperidinium substituents. http://purl.obolibrary.org/obo/UBERON_0000007 pituitary gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity pituitary body The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]. http://purl.obolibrary.org/obo/UBERON_0000165 mouth http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity regio oralis The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks). http://purl.obolibrary.org/obo/UBERON_0000178 blood http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid vertebrate blood A fluid that is composed of blood plasma and erythrocytes. http://purl.obolibrary.org/obo/UBERON_0000948 heart http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity vertebrate heart A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ. http://purl.obolibrary.org/obo/UBERON_0000992 ovary http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity reproductive system of female organism gonada The gonad of a female organism which contains germ cells. http://purl.obolibrary.org/obo/UBERON_0001004 respiratory system http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity apparatus respiratorius Functional system which consists of structures involved in respiration. http://purl.obolibrary.org/obo/UBERON_0001043 esophagus http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity oesophagus Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993). http://purl.obolibrary.org/obo/UBERON_0001052 rectum http://purl.obolibrary.org/obo/UBERON_0000064 organ part terminal portion of intestine The terminal portion of the intestinal tube, terminating with the anus. http://purl.obolibrary.org/obo/UBERON_0001153 caecum http://purl.obolibrary.org/obo/UBERON_0000064 organ part intestinum crassum caecum A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction. http://purl.obolibrary.org/obo/UBERON_0001155 colon http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity large bowel A portion of the large intestine before it becomes the rectum. In mammals, the colon is the most part of the large intestine, excluding the vermiform appendix, the rectum and the anal canal. http://purl.obolibrary.org/obo/UBERON_0001158 descending colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part colon descendens The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon. http://purl.obolibrary.org/obo/UBERON_0001255 urinary bladder http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity vesica urinaria Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. http://purl.obolibrary.org/obo/UBERON_0001323 tibial nerve http://purl.obolibrary.org/obo/UBERON_0000477 anatomical cluster medial popliteal nerve The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. http://purl.obolibrary.org/obo/UBERON_0002046 thyroid gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity thyroid A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. http://purl.obolibrary.org/obo/UBERON_0002048 lung http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity pulmo Respiration organ that develops as an outpocketing of the esophagus. http://purl.obolibrary.org/obo/UBERON_0002108 small intestine http://purl.obolibrary.org/obo/UBERON_0000064 organ part small bowel Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]. http://purl.obolibrary.org/obo/UBERON_0002367 prostate gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity male prostate The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid. http://purl.obolibrary.org/obo/UBERON_0002368 endocrine gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity glandula endocrina Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]. http://purl.obolibrary.org/obo/UBERON_0003889 fallopian tube http://purl.obolibrary.org/obo/UBERON_0000064 organ part uterine tube (sensu Mammalia) Initial section of the oviduct through which the ova pass from the ovary to the uterus. http://purl.obolibrary.org/obo/UBERON_0009853 body of uterus http://purl.obolibrary.org/obo/UBERON_0000064 organ part uterine corpus The part of the uterus above the isthmus and below the orifices of the uterine tubes. http://purl.obolibrary.org/obo/UBERON_0022276 splenic flexure of colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part splenic flexure of colon The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon — the other being the hepatic flexure in the right upper quadrant. http://purl.obolibrary.org/obo/CHEBI_16670 peptide http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule peptides Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc. http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity macromolecule A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. http://purl.obolibrary.org/obo/CHEBI_18723 nicotine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity rac-3-(1-methylpyrrolidin-2-yl)pyridine A racemate composed of equimolar amounts of (R)- and (S)-nicotine. http://purl.obolibrary.org/obo/CHEBI_33697 ribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule ribonucleic acids High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins. http://purl.obolibrary.org/obo/CHEBI_49575 diazepam http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity 7-chloro-1-methyl-5-phenyl-1,3-dihydro-2H-1,4-benzodiazepin-2-one A 1,4-benzodiazepinone that is 1,3-dihydro-2H-1,4-benzodiazepin-2-one substituted by a chloro group at position 7, a methyl group at position 1 and a phenyl group at position 5. http://purl.obolibrary.org/obo/CHEBI_52993 lormetazepam http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity 7-chloro-5-(2-chlorophenyl)-3-hydroxy-1-methyl-1,3-dihydro-2H-1,4-benzodiazepin-2-one A 1,4-benzodiazepinone compound having a methyl substituent at the 1-position, a hydroxy substituent at the 3-position, a 2-chlorophenyl group at the 5-position and a chloro substituent at the 7-position. http://purl.obolibrary.org/obo/CHEBI_53258 sodium citrate http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity trisodium 2-hydroxypropane-1,2,3-tricarboxylate The trisodium salt of citric acid. http://purl.obolibrary.org/obo/CHEBI_44915 propofol http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Propofol A phenol resulting from the formal substitution of the hydrogen at the 2 position of 1,3-diisopropylbenzene by a hydroxy group. http://purl.obolibrary.org/obo/CHEBI_8430 procaine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Procaine A benzoate ester, formally the result of esterification of 4-aminobenzoic acid with 2-diethylaminoethanol but formed experimentally by reaction of ethyl 4-aminobenzoate with 2-diethylaminoethanol. http://purl.obolibrary.org/obo/CHEBI_6754 pethidine http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity ethyl 1-methyl-4-phenylpiperidine-4-carboxylate A piperidinecarboxylate ester that is piperidine which is substituted by a methyl group at position 1 and by phenyl and ethoxycarbonyl groups at position 4. It is an analgesic which is used for the treatment of moderate to severe pain, including postoperative pain and labour pain. http://purl.obolibrary.org/obo/UBERON_0000064 organ part http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity cardinal organ part A multicellular structure that is a part of an organ. http://purl.obolibrary.org/obo/UBERON_0000316 cervical mucus http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid cervix mucus A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus. http://purl.obolibrary.org/obo/UBERON_0000362 renal medulla http://purl.obolibrary.org/obo/UBERON_0000481 multi-tissue structure renal pyramids set The inner portion of the kidney consisting of the renal pyramids. http://purl.obolibrary.org/obo/UBERON_0000463 organism substance http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity portion of organism substance Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. http://purl.obolibrary.org/obo/UBERON_0000479 tissue http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity tissue portion Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation. http://purl.obolibrary.org/obo/UBERON_0000956 cerebral cortex http://purl.obolibrary.org/obo/UBERON_0000477 anatomical cluster cortex of cerebral hemisphere The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex. http://purl.obolibrary.org/obo/UBERON_0001013 adipose tissue http://purl.obolibrary.org/obo/UBERON_0000479 tissue fatty tissue Portion of connective tissue composed of adipocytes enmeshed in areolar tissue. http://purl.obolibrary.org/obo/UBERON_0001090 synovial fluid http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid joint fluid Joint fluid is a transudate of plasma that is actively secreted by synovial cells. http://purl.obolibrary.org/obo/UBERON_0001114 right lobe of liver http://purl.obolibrary.org/obo/UBERON_0000064 organ part right liver lobe The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]. http://purl.obolibrary.org/obo/UBERON_0001119 right lobe of thyroid gland http://purl.obolibrary.org/obo/UBERON_0000064 organ part thyroid gland right lobe A lobe of thyroid gland that is in the right side of a thyroid gland. http://purl.obolibrary.org/obo/UBERON_0001120 left lobe of thyroid gland http://purl.obolibrary.org/obo/UBERON_0000064 organ part thyroid gland left lobe A lobe of thyroid gland that is in the left side of a thyroid gland. http://purl.obolibrary.org/obo/UBERON_0001225 cortex of kidney http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity renal cortex Outer cortical portion of the kidney, between the renal capsule and the renal medulla. http://purl.obolibrary.org/obo/UBERON_0001233 right adrenal gland http://purl.obolibrary.org/obo/UBERON_0002369 adrenal gland right suprarenal gland An adrenal gland that is in the right side of the abdomen. http://purl.obolibrary.org/obo/UBERON_0001234 left adrenal gland http://purl.obolibrary.org/obo/UBERON_0002369 adrenal gland left suprarenal gland An adrenal gland that is in the left side of the abdomen. http://purl.obolibrary.org/obo/UBERON_0001359 cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid cerebral spinal fluid A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord. http://purl.obolibrary.org/obo/UBERON_0001388 gastrocnemius http://purl.obolibrary.org/obo/UBERON_0001134 skeletal muscle tissue m.gastrocnemius The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg. http://purl.obolibrary.org/obo/UBERON_0001496 ascending aorta http://purl.obolibrary.org/obo/UBERON_0000064 organ part pars ascendens aortae The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart's axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]. http://purl.obolibrary.org/obo/UBERON_0001836 saliva http://purl.obolibrary.org/obo/UBERON_0000463 organism substance salivary gland secretion A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions. http://purl.obolibrary.org/obo/UBERON_0001913 milk http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid mammary gland milk An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation. http://purl.obolibrary.org/obo/UBERON_0001981 blood vessel http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity vascular tree organ region A vessel through which blood circulates in the body. http://purl.obolibrary.org/obo/UBERON_0001988 feces http://purl.obolibrary.org/obo/UBERON_0000463 organism substance portionem cacas Portion of semisolid bodily waste discharged through the anus[MW,modified]. http://purl.obolibrary.org/obo/UBERON_0002078 right cardiac atrium http://purl.obolibrary.org/obo/UBERON_0002081 cardiac atrium right cardiac atrium A cardiac atrium that is in the right side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve. http://purl.obolibrary.org/obo/UBERON_0002081 cardiac atrium http://purl.obolibrary.org/obo/UBERON_0000064 organ part heart atrium Cardiac chamber in which blood enters the heart. http://purl.obolibrary.org/obo/UBERON_0002084 heart left ventricle http://purl.obolibrary.org/obo/UBERON_0000064 organ part left ventricle of heart A cardiac ventricle that is in the left side of the heart. http://purl.obolibrary.org/obo/UBERON_0002097 skin of body http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity skin organ The organ covering the body that consists of the dermis and epidermis. http://purl.obolibrary.org/obo/UBERON_0002199 integument http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity the integument The dermis, epidermis and hypodermis. http://purl.obolibrary.org/obo/UBERON_0002415 tail http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity caudal subdivision An external caudal extension of the body. In chordates, the tail is post-anal, in other animals the anus ends in the tail. http://purl.obolibrary.org/obo/UBERON_0002469 esophagus mucosa http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity tunica mucosa oesophagi A mucosa that is part of a esophagus [Automatically generated definition]. http://purl.obolibrary.org/obo/UBERON_0003714 neural tissue http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity portion of neural tissue Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature. http://purl.obolibrary.org/obo/UBERON_0004648 esophagus muscularis mucosa http://purl.obolibrary.org/obo/UBERON_0000479 tissue muscularis mucosae of esophagus A muscularis mucosa that is part of a esophagus. http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid http://purl.obolibrary.org/obo/UBERON_0000463 organism substance body fluid Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not. http://purl.obolibrary.org/obo/UBERON_0006618 atrium auricular region http://purl.obolibrary.org/obo/UBERON_0000481 multi-tissue structure heart atrium auriclular region A small conical pouch projections located on the upper anterior portion of each atrium of the heart. http://purl.obolibrary.org/obo/UBERON_0008954 lingula of left lung http://purl.obolibrary.org/obo/UBERON_0000064 organ part lingula of the lung Anterioinferior portion of left upper lung lobe. http://purl.obolibrary.org/obo/UBERON_0010414 omental fat pad http://purl.obolibrary.org/obo/UBERON_0001013 adipose tissue omental fat depot Encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon. http://purl.obolibrary.org/obo/UBERON_0013755 arterial blood http://purl.obolibrary.org/obo/UBERON_0000178 blood portion of arterial blood A blood that is part of a artery. http://purl.obolibrary.org/obo/UBERON_0013756 venous blood http://purl.obolibrary.org/obo/UBERON_0000178 blood venous blood A blood that is part of a vein. http://purl.obolibrary.org/obo/UBERON_0013757 capillary blood http://purl.obolibrary.org/obo/UBERON_0000178 blood portion of capillary blood A blood that is part of a capillary. http://purl.obolibrary.org/obo/GEO_000000396 sovereign state http://purl.obolibrary.org/obo/GEO_000000400 governmental organization nation state A governmental organization with a defined territory on which it exercises internal and external sovereignty, a permanent population, a government, and the capacity to enter into relations with other sovereign states. http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method http://purl.obolibrary.org/obo/IAO_0000104 plan specification BCMETHOD The method by which conception or impregnation is prevented. This may be achieved through the use of devices, drugs or surgery. http://purl.obolibrary.org/obo/NCIT_C73993 Pack Year http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label {Pack Year} A quantification of lifetime tobacco exposure defined as (number of cigarettes smoked per day x number of years smoked)/20. One pack-year is smoking 20 cigarettes a day for one year. http://purl.obolibrary.org/obo/CHEBI_4910 etomidate http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity ethyl 1-[(1R)-1-phenylethyl]-1H-imidazole-5-carboxylate The ethyl ester of 1-[(1R)-1-phenylethyl]-1H-imidazole-5-carboxylic acid. It is an intravenous general anaesthetic with no analgesic activity. http://purl.obolibrary.org/obo/CHEBI_36333 local anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867 anaesthetic local anaesthetic Any member of a group of drugs that reversibly inhibit the propagation of signals along nerves. Wide variations in potency, stability, toxicity, water-solubility and duration of action determine the route used for administration, e.g. topical, intravenous, epidural or spinal block. http://purl.obolibrary.org/obo/CHEBI_5790 hydromorphone http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Hydromorphone A morphinane alkaloid that is a hydrogenated ketone derivative of morphine. A semi-synthetic drug, it is a centrally acting pain medication of the opioid class. http://purl.obolibrary.org/obo/CHEBI_9561 thiopental sodium http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity sodium 5-ethyl-4,6-dioxo-5-(pentan-2-yl)-1,4,5,6-tetrahydropyrimidine-2-thiolate An organic sodium salt having thiopental(1-) as the counter-ion. http://purl.obolibrary.org/obo/PCO_0000000 collection of organisms http://purl.obolibrary.org/obo/BFO_0000027 object aggregate organism collection A material entity that consists of two or more organisms, viruses, or viroids. http://purl.obolibrary.org/obo/OMRSE_00000010 human health care role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes health care role A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. http://purl.obolibrary.org/obo/OMRSE_00000014 nurse role http://purl.obolibrary.org/obo/OMRSE_00000050 Homo sapiens role nurse A health care role borne by a human being and realized by the care of individuals, families, and communities so they may attain, maintain, or recover optimal health and quality of life. http://purl.obolibrary.org/obo/NCIT_C128458 Australian/New Zealand Ethnicity http://purl.obolibrary.org/obo/HANCESTRO_0004 ancestry category Australian/New Zealand A collection of ethnic geographical categories including Australian and New Zealander. http://purl.obolibrary.org/obo/NCIT_C16212 Cancer Therapeutic Procedure http://purl.obolibrary.org/obo/OGMS_0000090 treatment anticancer therapy Any intervention for management of a malignant neoplasm. http://purl.obolibrary.org/obo/OBIB_0002000 specimen position http://purl.obolibrary.org/obo/PATO_0000140 position specimen laterality A position inhering in a specimen. http://purl.obolibrary.org/obo/OBI_0002651 image guided biopsy http://purl.obolibrary.org/obo/OBI_0002654 needle biopsy imaging guided biopsy A biopsy which uses an imaging procedure to guide a needle biopsy. http://purl.obolibrary.org/obo/OBI_0002652 computed tomography assisted biopsy http://purl.obolibrary.org/obo/OBI_0002651 image guided biopsy Computed Tomography-Guided Needle Biopsy A needle biopsy guided by real-time computed tomography (CT) scan images. http://purl.obolibrary.org/obo/OBI_0002655 fine needle aspiration biopsy http://purl.obolibrary.org/obo/OBI_0002654 needle biopsy FNAB A biopsy that uses a thin needle to extract cells. http://purl.obolibrary.org/obo/OBI_0002656 core needle biopsy http://purl.obolibrary.org/obo/OBI_0002654 needle biopsy CNB A biopsy that uses a hollow tube to collect a core of tissue. http://purl.obolibrary.org/obo/OBI_0002657 surgical biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy open biopsy A biopsy involving a surgical incision into an organism to access the biopsy material. http://purl.obolibrary.org/obo/OBI_0002660 abdominal wall fat pad biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy fat biopsy A biopsy involving the collection of a small part of the abdominal wall fat pad. http://purl.obolibrary.org/obo/OBI_0002661 tail biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy snip A biopsy involving the collection of the tip of a mamallian tail. http://purl.obolibrary.org/obo/OBI_0002663 skinpunch biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy punch biopsy; skin biopsy A biopsy that involves the collection of a cylinder of skin (including epidermis, dermis and superficial fat) using a punch tool. http://purl.obolibrary.org/obo/OBI_0002745 vacuum-assisted biopsy http://purl.obolibrary.org/obo/OBI_0002654 needle biopsy VAB A biopsy performed with a needle augmented with a vacuum device. http://purl.obolibrary.org/obo/IDO_0000450 pathogenic disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition pathogenicity A disposition to initiate processes that result in a disorder. http://purl.obolibrary.org/obo/NCIT_C77811 Mediterranean http://purl.obolibrary.org/obo/OBI_0000181 population MEDITERRANEAN Denotes a person having origins in any of the countries abutting the Mediterranean Sea, principally those of Europe. http://purl.obolibrary.org/obo/NCIT_C77817 Western European http://purl.obolibrary.org/obo/NCIT_C43851 European WESTERN EUROPEAN Denotes a person having origins in any of the countries of Western Europe such as Spain, Portugal, or France. http://purl.obolibrary.org/obo/NCIT_C77819 Eastern European http://purl.obolibrary.org/obo/NCIT_C43851 European EASTERN EUROPEAN Denotes a person having origins in any of the countries of Eastern Europe such as Czechoslovakia, Poland, Croatia, Hungary, Slovenia, Former Soviet Union, or Finland. It also includes persons who call themselves Gypsies from this region. http://purl.obolibrary.org/obo/NCIT_C77820 Middle Eastern http://purl.obolibrary.org/obo/OBI_0000181 population MIDDLE EASTERN Denotes a person having origins in the region of southwest Asia, between the India subcontinent and Europe, including Kuwait, Turkey, Lebanon, Israel, Iraq, Iran, Jordan, Saudi Arabia, lands east of Pakistan or the other countries of the Arabian Peninsula. Also includes people of Jewish ethnicity including Sephardic and Ashkenazic. http://purl.obolibrary.org/obo/NCIT_C81229 Alcohol Use History http://purl.obolibrary.org/obo/IAO_0000030 information content entity alcohol history A description of an individual's current and past experience with alcoholic beverage consumption. http://purl.obolibrary.org/obo/NCIT_C15477 Prior Radiation Therapy http://purl.obolibrary.org/obo/OGMS_0000090 treatment previously_irradiated An indicator that a person previously received radiation treatment for the same condition. http://purl.obolibrary.org/obo/NCIT_C16168 Prior Immunotherapy http://purl.obolibrary.org/obo/OGMS_0000090 treatment Prior Immunotherapy Originally, therapeutic administration of serum or gamma globulin containing preformed antibodies produced by another individual; currently, immunotherapy includes nonspecific systemic stimulation, adjuvants, active specific immunotherapy, and adoptive immunotherapy. New forms of immunotherapy include the use of monoclonal antibodies. This approach has been widely adopted by cancer specialists, often in cases which fail to respond to other treatment. Immunotherapy aims to boost immune system function, as with the administration of interferons and interleukin-2, or to attack cancerous cells directly, as with the injection of monoclonal antibodies. Various immunotherapeutic techniques have also been employed among AIDS patients. In addition, a number of alternative medical practices are claimed to enhance immune function, and various over-the-counter substances (e.g., goldenseal, lysine have gained popularity for this supposed property. http://purl.obolibrary.org/obo/NCIT_C16171 Prior Chemotherapy http://purl.obolibrary.org/obo/OGMS_0000090 treatment Prior Chemotherapy Regimens Previous chemotherapy administered as treatment for this cancer. http://purl.obolibrary.org/obo/NCIT_C16175 Prior Hormone Therapy http://purl.obolibrary.org/obo/OGMS_0000090 treatment prior hormonal therapy An indication that an individual has been previously treated with hormonal therapy. http://purl.obolibrary.org/obo/NCIT_C29719 Tobacco Smoking History http://purl.obolibrary.org/obo/IAO_0000030 information content entity Tobacco Smoking History A record of an individual's background in regard to smoking tobacco. This would include such factors as start date, end date (if applicable), number of cigarette smoked, attempts to quit, and others. http://purl.obolibrary.org/obo/IAO_8000002 editors ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module source ontology module An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users. http://purl.obolibrary.org/obo/IAO_8000005 import ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module import file A subset ontology module that is intended to be imported from another ontology. http://purl.obolibrary.org/obo/IAO_8000009 single layer subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module ribbon subset A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint. http://purl.obolibrary.org/obo/IAO_8000010 exclusion subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module antislim A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes. http://purl.obolibrary.org/obo/IAO_8000011 external import ontology module http://purl.obolibrary.org/obo/IAO_8000005 import ontology module external import An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach. http://purl.obolibrary.org/obo/IAO_8000012 species subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module taxon subset A subset ontology that is crafted to either include or exclude a taxonomic grouping of species. http://purl.obolibrary.org/obo/OBIB_0000618 settlement part of address of sample collection or study contact http://purl.obolibrary.org/obo/OBIB_0000641 settlement part of address Sample Collection/Study contact city The part of a sample collection or study contact's adress denoting a settlement. http://purl.obolibrary.org/obo/OBIB_0000619 biobank proper name http://purl.obolibrary.org/obo/IAO_0020000 identifier Name of biobank An identifier in natural language referring to a biobank. http://purl.obolibrary.org/obo/OBIB_0000621 biobank idenfier with ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/OBIB_0000619 biobank proper name Biobank ID A biobank identifier that has an ISO 3166-1 alpha-2 code as a part. http://purl.obolibrary.org/obo/OBIB_0000622 ISO 3166-1 alpha-2 code for sample collection or study contact http://purl.obolibrary.org/obo/OBIB_0000620 ISO 3166-1 alpha-2 code Sample Collection/Study contact country The ISO 3166-1 alpha-2 code that is part of the sample collection or study contact's postal address. http://purl.obolibrary.org/obo/OBIB_0000623 biobank organization http://purl.obolibrary.org/obo/OBI_0000245 organization biobank juristic person An organization bearing legal personality that owns or adminstrates a biobank. http://purl.obolibrary.org/obo/OBIB_0000627 name of biobank contact person http://purl.obolibrary.org/obo/IAO_0020015 personal name Biobank contact person A personal name that designates the person acting as contact for a biobank. http://purl.obolibrary.org/obo/OBIB_0000628 email address of biobank contact person http://purl.obolibrary.org/obo/IAO_0000429 email address Biobank contact email An email address for the purpose of contacting a biobank contact person. http://purl.obolibrary.org/obo/OBIB_0000631 department of biobank contact http://purl.obolibrary.org/obo/OBIB_0000630 department Biobank contact department A department that has a contact person for a biobank as an organizational member. http://purl.obolibrary.org/obo/OBIB_0000632 unique resource locator http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier uri A CRID that constitutes a reference to an Internet resource. http://purl.obolibrary.org/obo/OBIB_0000633 biobank's unique resource locator http://purl.obolibrary.org/obo/OBIB_0000632 unique resource locator Biobank URL A unique resource locator referring to the homepage of a biobank. http://purl.obolibrary.org/obo/OBIB_0000635 telephone number of biobank contact http://purl.obolibrary.org/obo/OBIB_0000634 telephone number Biobank contact phone A telephone number that is contact information about a biobank contact person. http://purl.obolibrary.org/obo/OBIB_0000638 telephone number of sample collection or study contact http://purl.obolibrary.org/obo/OBIB_0000634 telephone number Sample Collection/Study contact phone A telephone number that is contact information about a sample collection or study contact person. http://purl.obolibrary.org/obo/OBIB_0000639 postal code of biobank contact http://purl.obolibrary.org/obo/IAO_0000646 postal code Biobank contact ZIP The postal code that is part of the postal address of the biobank contact person. http://purl.obolibrary.org/obo/OBIB_0000642 settlement part of address biobank contact http://purl.obolibrary.org/obo/OBIB_0000641 settlement part of address Biobank contact city The part of a biobank contact's adress denoting a settlement. http://purl.obolibrary.org/obo/OBIB_0000644 intra-settlement specification part of address of biobank contact http://purl.obolibrary.org/obo/OBIB_0000643 intra-settlement specification part of address Biobank contact address An intra-settlement specification part of address that is part of a biobank contact's postal address. http://purl.obolibrary.org/obo/OBIB_0000645 hosted study collection http://purl.obolibrary.org/obo/OBI_0002076 collection of specimens Hosted studies A object aggregate that consists of specimens, participates in a study and is part of a biobank. http://purl.obolibrary.org/obo/OBIB_0000647 email address of sample collection or study contact http://purl.obolibrary.org/obo/IAO_0000429 email address Sample Collection/Study contact email An email address for the purpose of contacting a sample collection or study contact person. http://purl.obolibrary.org/obo/OBIB_0000648 sample collection or study aim description http://purl.obolibrary.org/obo/IAO_0000300 textual entity Sample collection or study description A textual entity describing a study aim or a sample collection. http://purl.obolibrary.org/obo/OBIB_0000649 study proper name http://purl.obolibrary.org/obo/IAO_0020000 identifier Study name A proper name that designates a study. http://purl.obolibrary.org/obo/OBIB_0000650 name of sample collection responsible or principal investigator http://purl.obolibrary.org/obo/IAO_0020015 personal name Sample Collection Responsible / Principal Investigator A personal name that designates the human being responsible for a sample collection or the human being being the principal investigator in a study. http://purl.obolibrary.org/obo/OBIB_0000651 name of sample collection or study contact person http://purl.obolibrary.org/obo/IAO_0020015 personal name Sample Collection/Study contact person A personal name that designates the person acting as contact for a sample collection or a study. http://purl.obolibrary.org/obo/OBIB_0000652 department of sample collection or study contact http://purl.obolibrary.org/obo/OBIB_0000630 department Sample Collection/Study contact department A department that has a contact person for a sample collection or a study as an organizational member. http://purl.obolibrary.org/obo/OBIB_0000654 intra-settlement specification part of address of sample collection or study contact http://purl.obolibrary.org/obo/OBIB_0000643 intra-settlement specification part of address Sample Collection/Study contact address An intra-settlement specification part of address that is part of a sample collection or study contact's postal address. http://purl.obolibrary.org/obo/OBIB_0000655 postal code for sample collection or study contact http://purl.obolibrary.org/obo/IAO_0000646 postal code Sample Collection/Study contact ZIP Postal code that is part of the address of a human being serving as sample collection or study contact. http://purl.obolibrary.org/obo/OBIB_0000656 biobank location ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/OBIB_0000620 ISO 3166-1 alpha-2 code Biobank country code An ISO 3166-1 alpha-2 code that designates the country a biobank is located in. http://purl.obolibrary.org/obo/OBIB_0000679 patient registry data http://purl.obolibrary.org/obo/IAO_0000100 data set patient register data A data set of collected secondary data related to patients with a specific diagnosis, condition, or procedure and plays an important role in post marketing surveillance of pharmaceuticals. http://purl.obolibrary.org/obo/OBIB_0000684 comorbidity http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis secondary infection, nosocomial infection A diagnosis that is the outcome of a diagnostic process targeting a second or additional health problem. http://purl.obolibrary.org/obo/OBIB_0000685 primary diagnosis http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis main diagnosis A diagnosis that is the main reason for the inducement of medical care. http://purl.obolibrary.org/obo/OBIB_0000705 age interval information for sampled donors http://purl.obolibrary.org/obo/OBIB_0000677 age interval information sampled group age interval Age interval information that is age information of specimen donors. http://purl.obolibrary.org/obo/OBIB_0000714 date of specimen collection http://purl.obolibrary.org/obo/IAO_0000027 data item date of specimen preparation A data item that indicates the time when the collection of a specimen occurred. http://purl.obolibrary.org/obo/OBIB_0000715 specimen meeting specification http://purl.obolibrary.org/obo/OBI_0100051 specimen adherance to specification All specimens that meet the set parameters to be procured on. http://purl.obolibrary.org/obo/OBIB_0000728 specimen donor http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens sample donor A Homo sapiens who contributes specimen. http://purl.obolibrary.org/obo/OBIB_0000729 sample handling http://purl.obolibrary.org/obo/OBI_0000011 planned process specimen handling A planned process of preparing and submitting specimens to storage. http://purl.obolibrary.org/obo/NCIT_C126528 Central African http://purl.obolibrary.org/obo/OBI_0000181 population Central African Denotes a person whose ancestry is in any of the countries of the central part of the African continent: Burundi, the Central African Republic, Chad, the Democratic Republic of the Congo, and Rwanda. http://purl.obolibrary.org/obo/NCIT_C126529 North African http://purl.obolibrary.org/obo/OBI_0000181 population North African Denotes a person whose ancestry is in any of the countries of the northern part of the African continent: Algeria, Egypt, Libya, Morocco, Sudan, Tunisia, and Western Sahara. http://purl.obolibrary.org/obo/NCIT_C126530 South African http://purl.obolibrary.org/obo/OBI_0000181 population South African Denotes a person whose ancestry is in the country of South Africa. http://purl.obolibrary.org/obo/NCIT_C126533 Southeast Asian http://purl.obolibrary.org/obo/OBI_0000181 population SOUTHEAST ASIAN Denotes a person whose ancestry is in any of the Asian countries south of China, east of India, west of New Guinea and north of Australia. http://purl.obolibrary.org/obo/NCIT_C126534 Central Asian http://purl.obolibrary.org/obo/OBI_0000181 population CENTRAL ASIAN Denotes a person whose ancestry is in any of the Asian countries between the Caspian Sea in the west, China in the east, Afghanistan in the south, and Russia in the north. http://purl.obolibrary.org/obo/NCIT_C126535 Australian http://purl.obolibrary.org/obo/OBI_0000181 population Australian Denotes a person whose ancestry is in the country or continent of Australia. http://purl.obolibrary.org/obo/NCIT_C126536 New Zealander http://purl.obolibrary.org/obo/OBI_0000181 population New Zealander Denotes a person whose ancestry is in the country of New Zealand. http://purl.obolibrary.org/obo/NCIT_C126538 Scandinavian http://purl.obolibrary.org/obo/OBI_0000181 population Scandinavian Denotes a person whose ancestry is in the countries of Scandinavia: Denmark, Norway and Sweden. Finland and Iceland are generally included as part of the Scandinavian region. http://purl.obolibrary.org/obo/OBI_0002190 courier organization http://purl.obolibrary.org/obo/OBI_0000245 organization courier An organization that delivers messages, packages, and mail. http://purl.obolibrary.org/obo/OBI_0002198 molecular analysis facility organization http://purl.obolibrary.org/obo/OBI_0000245 organization MAF An organization that provides molecular analysis service. http://purl.obolibrary.org/obo/OBI_0002200 cannot be assessed determination http://purl.obolibrary.org/obo/OBI_0002199 reason for lack of data item cannot be assessed A reason for lack of data item that is the negative output of a determination if assay will provide reliable results. http://purl.obolibrary.org/obo/OBI_0002210 histologic grade according to the Fuhrman Nuclear Grading System http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Histologic Grade (Fuhrman Nuclear Grading System) A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System. http://purl.obolibrary.org/obo/OBI_0002224 pathologic primary tumor stage for colon and rectum according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread colorectal primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002232 pathologic primary tumor stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread lung primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002243 pathologic primary tumor stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread kidney primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002256 pathologic primary tumor stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread ovarian primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002270 pathologic lymph node stage for colon and rectum according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread colon lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002279 pathologic lymph node stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread colon lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002284 pathologic lymph node stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread kidney lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002287 pathologic lymph node stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread ovarian lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002290 pathologic distant metastases stage for colon according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: colon distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002298 pathologic distant metastases stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: lung distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002306 pathologic distant metastases stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: kidney distant Metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002310 pathologic distant metastases stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: ovarian distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002314 clinical tumor stage group according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Clinical tumor stage group (AJCC 7th Edition) A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems. http://purl.obolibrary.org/obo/OBI_0002326 International Federation of Gynecology and Obstetrics cervical cancer stage value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Clinical FIGO stage A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems. http://purl.obolibrary.org/obo/OBI_0002341 International Federation of Gynecology and Obstetrics ovarian cancer stage value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Pathologic Tumor Stage Grouping for ovarian cancer (FIGO) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system. http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Performance Status Scale A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life). http://purl.obolibrary.org/obo/OBI_0002357 Eastern Cooperative Oncology Group score value specification http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification ECOG score A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient. http://purl.obolibrary.org/obo/OBI_0002363 Karnofsky score vaue specification http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification Karnofsky Score A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment. http://purl.obolibrary.org/obo/OBI_0002369 clinical history devoid of cancer http://purl.obolibrary.org/obo/OGMS_0000015 clinical history clinical history of no cancer A clinical history in which there was no diagnosis of cancer. http://purl.obolibrary.org/obo/OBI_0002371 diagnosis of cancer http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis cancer diagnosis A diagnosis that is an assertion that a patient who is the subject of a diagnostic process has cancer. http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer http://purl.obolibrary.org/obo/OGMS_0000015 clinical history family history of cancer A clinical history in which there is a diagnosis of cancer in a blood relative. http://purl.obolibrary.org/obo/OBI_0002406 delivery form for hormonal replacement therapy http://purl.obolibrary.org/obo/OBI_0000047 processed material form of hormone replacement therapy A processed material used for delivery of hormones in hormone replacement therapy. http://purl.obolibrary.org/obo/OBI_0002421 indicator of whether an inclusion criterion was met http://purl.obolibrary.org/obo/IAO_0000030 information content entity eligibility criterion met An information content entity that indicates whether or not an entity has met a specific requirement in order to take part in a given process. http://purl.obolibrary.org/obo/OBI_0002422 indicator of whether all inclusion criteria were met http://purl.obolibrary.org/obo/IAO_0000030 information content entity all eligibility criteria met An information content entity that indicates whether or not an entity has met all specific requirements in order to take part in a given process. http://purl.obolibrary.org/obo/OBI_0002743 molecular label role http://purl.obolibrary.org/obo/OBI_0000086 reagent role molecular tracer role A reagent role inhering in a molecular entity intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay. http://purl.obolibrary.org/obo/OBI_0002744 molecular label http://purl.obolibrary.org/obo/OBI_0001879 reagent molecular tracer A molecular reagent intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay http://purl.obolibrary.org/obo/OBI_0002126 IHC-stained fixed tissue slide specimen http://purl.obolibrary.org/obo/OMIABIS_0000052 obsolete fixed tissue slide specimen immunohistochemistry slide specimen A fixed tissue slide specimen that is the output of immunohistochemistry slide staining. http://purl.obolibrary.org/obo/OBI_0002612 fecal swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen stool swab specimen A specimen that is collected with a swab from the surface of a feces. http://purl.obolibrary.org/obo/OBI_1200000 FFPE specimen http://purl.obolibrary.org/obo/OBI_0000950 paraffin specimen formalin-fixed paraffin-embeded specimen A specimen that has been fixed in formalin and embedded in paraffin. http://purl.obolibrary.org/obo/NCIT_C41263 South Asian http://purl.obolibrary.org/obo/OBI_0000181 population South Asians Denotes a person whose ancestry is in the countries of the Indian sub-continent, including India, Pakistan, Bangladesh, and Sri Lanka. http://purl.obolibrary.org/obo/NCIT_C43851 European http://purl.obolibrary.org/obo/OBI_0000181 population EUROPEAN Denotes the inhabitants of any of the countries of Europe, a person from there, or their descendants elsewhere. http://purl.obolibrary.org/obo/OBI_0002543 atrial appendage specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from the atrium auricular region. http://purl.obolibrary.org/obo/OBI_0002550 sigmoid colon specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from sigmoid colon. http://purl.obolibrary.org/obo/IDO_0001008 immunosuppressed human experiencing HIV-based immunosuppression http://purl.obolibrary.org/obo/IDO_0000456 immunosuppressed organism An immunosuppressed organism that is a human experiencing HIV-based immunosuppression. http://purl.obolibrary.org/obo/IDO_0001013 immunosuppressed human experiencing chronic systemic steroid use-based immunosuppression http://purl.obolibrary.org/obo/IDO_0000456 immunosuppressed organism An immunosuppressed organism that is a human experiencing chronic systemic steroid use-based immunosuppression. http://purl.obolibrary.org/obo/IDO_0001014 immunosuppressed human experiencing drug-based immunosuppression due to organ transplant http://purl.obolibrary.org/obo/IDO_0000456 immunosuppressed organism A pathologically immunosuppressed organism that is a human experiencing drug-based immunosuppression. http://purl.obolibrary.org/obo/OAE_0001159 colectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgery that is a surgical procedure to remove all or part of your colon. http://purl.obolibrary.org/obo/APOLLO_SV_00000496 ORCID http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier curated by ORCID, Inc. to denote some academic author. http://purl.obolibrary.org/obo/OBIB_0000058 Location below resection http://purl.obolibrary.org/obo/FMA_50707 Anatomical location An anatomical location that is just below (1 cm) the site of surgery. http://purl.obolibrary.org/obo/OBIB_0000059 Location adjacent to tissue fixation http://purl.obolibrary.org/obo/FMA_50707 Anatomical location An anatomical location that is adjacent to the site where tissue was collected and subjected to fixation. http://purl.obolibrary.org/obo/OBIB_0000060 time in fixative measurement http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that states the duration during which a specimen was submerged in fixative. http://purl.obolibrary.org/obo/OBIB_0000061 postmortem collecting specimen from organism http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism A collection from organism that occurs after the organism is dead. http://purl.obolibrary.org/obo/OBIB_0000062 collecting specimen from organism during organ donation http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism A collecting specimen from organism that occurs during the process of organ donation. http://purl.obolibrary.org/obo/OBIB_0000065 rectal temperature measurement assay http://purl.obolibrary.org/obo/OBIB_0000063 internal body temperature measurement assay An internal body temperature measurement assay where the thermometer is placed in the rectum. http://purl.obolibrary.org/obo/OBIB_0000066 organ temperature measurement assay http://purl.obolibrary.org/obo/OBIB_0000063 internal body temperature measurement assay An internal body temperature measurement assay where the thermometer is placed in an organ. http://purl.obolibrary.org/obo/OBIB_0000067 anesthesia probe temperature measurement assay http://purl.obolibrary.org/obo/OBIB_0000063 internal body temperature measurement assay An internal body temperature measurement assay where the temperature probe interfaces with the anesthesia vent monitor. Typically the thermometer is a rectal probe with a wire and connector that hooks up to the ekg/pulse ox/co2 monitor. http://purl.obolibrary.org/obo/OBIB_0000071 specimen transport SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the transportation of specimens. http://purl.obolibrary.org/obo/OBIB_0000072 tissue procurement SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for collecting specimens from organism. http://purl.obolibrary.org/obo/OBIB_0000074 SOP memorandum http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is a short communication to provide advisory or informative matter about a standard operating procedure. http://purl.obolibrary.org/obo/OBIB_0000075 SOP adjustment http://purl.obolibrary.org/obo/OBI_0000272 protocol A protocol that provides deviations or changes to part of an existing standard operating procedure. http://purl.obolibrary.org/obo/OBIB_0000076 first blood draw date http://purl.obolibrary.org/obo/OBIB_0000714 date of specimen collection A date of specimen collection for the first collection of blood from a donor. http://purl.obolibrary.org/obo/OBIB_0000077 first tissue removed date http://purl.obolibrary.org/obo/OBIB_0000714 date of specimen collection A date of specimen collection for the first collection of a tissue from a donor. http://purl.obolibrary.org/obo/OBIB_0000078 date of form data verification http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when the data collected on a form was verified. http://purl.obolibrary.org/obo/OBIB_0000079 blood draw time http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time of day when a blood specimen was collected. http://purl.obolibrary.org/obo/OBIB_0000080 first blood draw time http://purl.obolibrary.org/obo/OBIB_0000079 blood draw time A blood draw time for the first collection of a blood specimen from a donor. http://purl.obolibrary.org/obo/OBIB_0000081 first tissue removed time http://purl.obolibrary.org/obo/OBIB_0000725 time of surgical removal of specimen A time of surgical removal of specimen for the first removal of tissue from a donor. http://purl.obolibrary.org/obo/OBIB_0000082 time of surgical ligature for specimen collection http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time of day when a clamp or ligature was applied to an organ for specimen collection. http://purl.obolibrary.org/obo/OBIB_0000083 form data verification process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to assess the correctness of data entered on a form. http://purl.obolibrary.org/obo/OBIB_0000084 surgical ligature process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to stop blood flow for an organ during a surgical procedure using a clamp or ligature. http://purl.obolibrary.org/obo/OBIB_0000087 autolysis value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is used to record the destruction of an organism cells or tissues by the organisms' own enzymes or processes with nominal categories ranging from none to severe. http://purl.obolibrary.org/obo/OBIB_0000088 followup required for specimen collection issue http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an indicator of whether further followup on a specimen collection issue is required. http://purl.obolibrary.org/obo/OBIB_0000089 resolved specimen collection issue http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an indicator of whether a specimen collection issue is resolved. http://purl.obolibrary.org/obo/OBIB_0000090 reason for not collecting frozen specimens http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement that is an explanation as to why frozen specimens were not collected. http://purl.obolibrary.org/obo/OBIB_0000091 comment on resolved specimen collection issue http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement made in regards to the resolution of an issue with the tissue. http://purl.obolibrary.org/obo/OBIB_0000092 specimen donor body refrigerated indicator http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating whether the body of the specimen donor was refrigerated after death but prior to specimen collection. http://purl.obolibrary.org/obo/OBIB_0000093 time donor body refrigerated measurement http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that states the duration during which the specimen donor's body was refrigerated. http://purl.obolibrary.org/obo/OBIB_0000096 positive serological assay result http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the amount of a serum analyte is at a level above a threshold considered to be present. http://purl.obolibrary.org/obo/OBIB_0000097 negative serological assay result http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the amount of a serum analyte is at a level below a threshold considered to be present. http://purl.obolibrary.org/obo/OBIB_0000098 indeterminate serological assay result http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the amount of a serum analyte is approximately at a threshold considered to be present and therefore can not be confidently scored as positive or negative. http://purl.obolibrary.org/obo/OBIB_0000099 non-performance of an assay http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about the status of an assay and indicates that the assay has not been started or completed. http://purl.obolibrary.org/obo/OBIB_0000100 date of surgical removal of specimen http://purl.obolibrary.org/obo/OBIB_0000714 date of specimen collection A date of specimen collection on which the surgery was performed during which the specimen was collected. http://purl.obolibrary.org/obo/OBIB_0000101 preoperative intravenous administration of sedative http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer sedation drugs intravenously prior to surgery in order to induce total or partial loss of sensation especially tactile sensation and pain. http://purl.obolibrary.org/obo/OBIB_0000102 preoperative intravenous administration of opioid analgesic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer opioid analgesics intravenously prior to surgery in order to induce total or partial loss of sensation especially tactile sensation and pain. http://purl.obolibrary.org/obo/OBIB_0000103 preoperative intravenous administration of antiemetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer antiemetic agents intravenously prior to surgery to prevent nausea or vomiting. http://purl.obolibrary.org/obo/OBIB_0000104 preoperative intravenous administration of antacid http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer antacid intravenously prior to surgery in order to relieve and reduce the symptoms of ulcers in the stomach and upper small intestine. http://purl.obolibrary.org/obo/OBIB_0000105 preoperative intravenous administration of medication http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer medication intravenously prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000106 administration of local anaesthetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer anaesthetic to a restricted or localized area in order to produce a loss of feeling. http://purl.obolibrary.org/obo/OBIB_0000107 administration of regional anaesthetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer anaesthetic to a restricted area or part of the body in order to produce a loss of feeling. http://purl.obolibrary.org/obo/OBIB_0000108 administration of intravenous anaesthetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer anaesthetic within or into a vein or veins in order to produce a loss of feeling. http://purl.obolibrary.org/obo/OBIB_0000109 intravenous administration of opioid analgesic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer opioid analgesics intravenously in order to induce total or partial loss of sensation especially tactile sensation and pain. http://purl.obolibrary.org/obo/OBIB_0000110 intravenous administration of muscle relaxant http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer muscle relaxant intravenously in order to relax skeletal muscles and reduce muscle contraction. http://purl.obolibrary.org/obo/OBIB_0000111 administration of inhalation anaesthetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer anaesthetic in the form of a gas aerosol or fine powder via the respiratory tract usually by oral or nasal inhalation for local or systemic effect. http://purl.obolibrary.org/obo/OBIB_0000112 administration of anaesthetic http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer anaesthetic in order to produce a loss of feeling. http://purl.obolibrary.org/obo/OBIB_0000113 administration of insulin during surgery http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer insulin during a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000114 administration of steroid during surgery http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer steroid during a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000115 administration of antimicrobial agent during surgery http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer antimicrobial agent(s) during a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000116 administration of medication during surgery http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process to administer medication(s) during a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000117 time of first surgical incision http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time of day at which the first incision is made during surgery. http://purl.obolibrary.org/obo/OBIB_0000118 abdominoperineal resection http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure in which the anus, rectum, and sigmoid colon are removed. http://purl.obolibrary.org/obo/OBIB_0000120 sigmoid colectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is the surgical removal of the sigmoid colon. http://purl.obolibrary.org/obo/OBIB_0000122 subtotal colectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is complete resection of the colon http://purl.obolibrary.org/obo/OBIB_0000123 total colectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is resection of part of the colon or a resection of all of the colon without complete resection of the colon http://purl.obolibrary.org/obo/OBIB_0000124 transverse colectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is resection of the transverse colon along with the middle colic vessels and its mesentery. http://purl.obolibrary.org/obo/OBIB_0000126 proctectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove all or part of the rectum. It is often needed to treat rectal cancer. http://purl.obolibrary.org/obo/OBIB_0000127 proctocolectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is the surgical removal of the rectum and all or part of the colon.[ http://purl.obolibrary.org/obo/OBIB_0000128 rectosigmoidectomy http://purl.obolibrary.org/obo/OAE_0001159 colectomy A colectomy that is the surgical removal of the rectum and sigmoid colon. http://purl.obolibrary.org/obo/OBIB_0000129 time of first clamp for specimen removal http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time of day when the first clamp was applied to the vasculature of an organ for specimen collection. http://purl.obolibrary.org/obo/OBIB_0000130 time of second clamp for specimen removal http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time of day when the second clamp was applied to the vasculature of an organ for specimen collection. http://purl.obolibrary.org/obo/OBIB_0000131 in vivo intraoperative ischemic period http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum of the period between organ resection and the time of first clamping perfomed in vivo. http://purl.obolibrary.org/obo/OBIB_0000134 first temperature recorded in operating room of specimen donor http://purl.obolibrary.org/obo/IAO_0000582 time stamped measurement datum A time stamped measurement datum that is the first temperature recorded in the operating room of the specimen donor. http://purl.obolibrary.org/obo/OBIB_0000135 second temperature recorded in operating room of specimen donor http://purl.obolibrary.org/obo/IAO_0000582 time stamped measurement datum A time stamped measurement datum that is the second temperature recorded in the operating room of the specimen donor. http://purl.obolibrary.org/obo/OBIB_0000136 oxygen desaturation epochs prior to organ excision description http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement of the epochs of oxygen desaturation of less than 92% for more than 5 minutes prior to organ excision. http://purl.obolibrary.org/obo/OBIB_0000137 carbon dioxide level of specimen donor recorded at time closest to organ excision http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the level of carbon dioxide gas at time closest to organ exiscion from the specimen donor. http://purl.obolibrary.org/obo/OBIB_0000138 albumin volume administered intraoperatively http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the volume of albumin administered during surgery. http://purl.obolibrary.org/obo/OBIB_0000139 amount of packed red blood cells administered intraoperatively http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count of the number of units of packed red blood cells administered during surgery. http://purl.obolibrary.org/obo/OBIB_0000140 platelet volume administered intraoperatively http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the volume of platelets administered during surgery measured. http://purl.obolibrary.org/obo/OBIB_0000141 amount of fresh frozen plasma administered intraoperatively http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count of the number of units of fresh frozen plasma administered during surgery. http://purl.obolibrary.org/obo/OBIB_0000148 indicator of ascites fluid collection during surgery http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indication of whether ascites fluid was collected from the specimen donor during organ excision. http://purl.obolibrary.org/obo/OBIB_0000149 ascites fluid from specimen donor during surgery volume measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the volume of ascites fluid collected from the specimen donor during surgery. http://purl.obolibrary.org/obo/OBIB_0000150 Duration of fasting by specimen donor prior to surgery http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum of the duration of fasting by the specimen donor prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000151 comment on donor pre-operative bowel preparation prior to surgery http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement of the pre-operative bowel preparation performed prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000152 comment on notable events during donor surgery http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement of notable events that occurred during surgery. http://purl.obolibrary.org/obo/OBIB_0000153 time specimen left operating room http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time at which the surgical specimen left the operating for delivery to the pathology gross room. http://purl.obolibrary.org/obo/OBIB_0000154 hysterectomy with bilateral salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of the uterus, cervix, fallopian tubes, and ovaries. This is the most common surgery done for endometrial cancer. http://purl.obolibrary.org/obo/OBIB_0000155 hysterectomy with left salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of the uterus, cervix, left fallopian tube, and left ovary. http://purl.obolibrary.org/obo/OBIB_0000156 hysterectomy with right salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of the uterus, cervix, right fallopian tube, and right ovary. http://purl.obolibrary.org/obo/OBIB_0000157 bilateral oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of both ovaries. http://purl.obolibrary.org/obo/OBIB_0000158 left oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of the left ovary. http://purl.obolibrary.org/obo/OBIB_0000159 right oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure with the removal of the right ovary. http://purl.obolibrary.org/obo/OBIB_0000160 pelvic exenteration http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure that removes all organs from a person's pelvic cavity including the urinary bladder, urethra, rectum, and anus. http://purl.obolibrary.org/obo/OBIB_0000161 pelvic mass excision http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove a mass (growth or tumor) on the ovary or in the pelvis. http://purl.obolibrary.org/obo/OBIB_0000162 bilateral salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove both ovaries and both fallopian tubes. http://purl.obolibrary.org/obo/OBIB_0000163 left salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove the left ovary and left fallopian tube. http://purl.obolibrary.org/obo/OBIB_0000164 right salpingo-oophorectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove the right ovary and right fallopian tube. http://purl.obolibrary.org/obo/OBIB_0000165 surgical method http://purl.obolibrary.org/obo/OBI_0000272 protocol A protocol providing the action or system by which the surgical procedure is to be performed. http://purl.obolibrary.org/obo/OBIB_0000166 abdominal surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method A surgical method in which operations are performed through the abdomen. http://purl.obolibrary.org/obo/OBIB_0000167 vaginal surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method A surgical method in which operations are performed through the vagina. http://purl.obolibrary.org/obo/OBIB_0000168 laparoscopic surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method A surgical method in which operations are performed far from their location through small incisions (usually 0.5���1.5��cm) elsewhere in the body. http://purl.obolibrary.org/obo/OBIB_0000169 laparoscopically assisted vaginal surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method A surgical method in which operations are performed through the vagina aided by laparoscopic tools and techniques. http://purl.obolibrary.org/obo/OBIB_0000170 supracervical hysterectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure in which the body of the uterus is removed but the cervix is kept intact, as compared to the more common total hysterectomy, in which the uterus, cervix and fundus (the part of the uterus above the fallopian tube openings) are removed. http://purl.obolibrary.org/obo/OBIB_0000171 robotic surgical method http://purl.obolibrary.org/obo/OBIB_0000165 surgical method A surgical method using very small tools attached to a robotic arm. The surgeon controls the robotic arm with a computer. http://purl.obolibrary.org/obo/OBIB_0000172 indicator of pelvic washings collected during ovarian surgery http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indication of whether pelvic washings were collected during ovarian surgery. http://purl.obolibrary.org/obo/OBIB_0000184 left lung biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy A biopsy of the left lung. http://purl.obolibrary.org/obo/OBIB_0000185 right lung biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy A biopsy of the right lung. http://purl.obolibrary.org/obo/OBIB_0000186 left lung lobectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove one of the lobes of the left lung. http://purl.obolibrary.org/obo/OBIB_0000187 right lung lobectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove one of the lobes of the right lung. http://purl.obolibrary.org/obo/OBIB_0000188 left lung mass excision http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove a mass (growth or tumor) in the left lung. http://purl.obolibrary.org/obo/OBIB_0000189 right lung mass excision http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove a mass (growth or tumor) in the right lung. http://purl.obolibrary.org/obo/OBIB_0000190 left pneumonectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure performed to remove an entire left lung http://purl.obolibrary.org/obo/OBIB_0000191 right pneumonectomy http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure performed to remove an entire right lung http://purl.obolibrary.org/obo/OBIB_0000192 wedge resection of left lung http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove a triangle-shaped slice of tissue from the left lung. It may be used to remove a tumor or some other type of tissue that requires removal and typically includes a small amount of normal tissue around it. http://purl.obolibrary.org/obo/OBIB_0000193 wedge resection of right lung http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure A surgical procedure to remove a triangle-shaped slice of tissue from the right lung. It may be used to remove a tumor or some other type of tissue that requires removal and typically includes a small amount of normal tissue around it. http://purl.obolibrary.org/obo/OBIB_0000194 indicator of collected and banked pre-operative blood specimens http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether pre-operative/pre-anesthesia blood samples were collected from the participant and were successfully banked in a biobank. http://purl.obolibrary.org/obo/OBIB_0000195 reason for not banking pre-operative blood specimen http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement providing a reason that the pre-operative/pre-anesthesia blood samples were not received in a biobank as per SOP. http://purl.obolibrary.org/obo/OBIB_0000196 blood not received in biobank http://purl.obolibrary.org/obo/OBIB_0000195 reason for not banking pre-operative blood specimen A reason for not banking pre-operative blood specimen which is the blood specimen was not received in the biobank. http://purl.obolibrary.org/obo/OBIB_0000197 minimum amount of required pre-op blood not drawn http://purl.obolibrary.org/obo/OBIB_0000195 reason for not banking pre-operative blood specimen A reason for not banking pre-operative blood specimen which is a minimum amount of required pre-op blood was not drawn. http://purl.obolibrary.org/obo/OBIB_0000198 minimum number of aliquots not banked http://purl.obolibrary.org/obo/OBIB_0000195 reason for not banking pre-operative blood specimen A reason for not banking pre-operative blood specimen which is a minimum number of aliquots was not banked. http://purl.obolibrary.org/obo/OBIB_0000199 blood was hemolyzed or not useable http://purl.obolibrary.org/obo/OBIB_0000195 reason for not banking pre-operative blood specimen A reason for not banking pre-operative blood specimen which is the blood was hemolyzed or not useable. http://purl.obolibrary.org/obo/OBIB_0000200 receipt and dissection of surgical specimen SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the receipt and dissection of surgical tissue in a biobank. http://purl.obolibrary.org/obo/OBIB_0000201 data and time of biobank receipt of specimen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time at which the specimen was received in the biobank. http://purl.obolibrary.org/obo/OBIB_0000202 name of biobank person receiving specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who received a specimen in the biobank. http://purl.obolibrary.org/obo/OBIB_0000203 comment from specimen receipt http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states a comment or issue regarding specimen receipt or deviations from a standard operating procedure for specimen receipt. http://purl.obolibrary.org/obo/OBIB_0000204 parent specimen ID http://purl.obolibrary.org/obo/OBIB_0000721 specimen ID A specimen ID denoting a specimen that is used to create a specimen family. http://purl.obolibrary.org/obo/OBIB_0000205 name of dissector of parent specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the dissection of a surgical specimen to create a specimen family. http://purl.obolibrary.org/obo/OBIB_0000206 beginning time of parent specimen dissection. http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time that the dissection of a specimen for specimen family creation began. http://purl.obolibrary.org/obo/OBIB_0000207 ending time of parent specimen dissection. http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time that the dissection of a specimen for specimen family creation ended. http://purl.obolibrary.org/obo/OBIB_0000208 specimen gross appearance http://purl.obolibrary.org/obo/IAO_0000027 data item A data item on manifestations of disease produced from macroscopic analysis of a specimen. http://purl.obolibrary.org/obo/OBIB_0000209 specimen gross appearance of tumor http://purl.obolibrary.org/obo/OBIB_0000208 specimen gross appearance A specimen gross appearance of a tumor manifestation. http://purl.obolibrary.org/obo/OBIB_0000215 medical product expiration date http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the the date determined by appropriate stability testing of the medical product, lot, batch or item after which the product may not meet the appropriate regulatory agencies requirements. http://purl.obolibrary.org/obo/OBIB_0000216 fixative product manufacturer http://purl.obolibrary.org/obo/OBI_0000835 manufacturer A manufacturer that produces fixatives used in specimen collection. http://purl.obolibrary.org/obo/OBIB_0000220 buffered formalin condition http://purl.obolibrary.org/obo/BFO_0000019 quality A quality that inheres in buffered formalin by virtue of its usage and processing. http://purl.obolibrary.org/obo/OBIB_0000222 blood specimen collection and processing SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for collection and processing of blood specimens. http://purl.obolibrary.org/obo/OBIB_0000223 minimum required pre-operative blood tubes collected http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating whether the minimum requirement according to a standard operating procedure was met for pre-operative blood collection. http://purl.obolibrary.org/obo/OBIB_0000224 approval to proceed with collection http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating whether approval was received to proceed with collection. http://purl.obolibrary.org/obo/OBIB_0000225 phlebotomist role http://purl.obolibrary.org/obo/OMRSE_00000012 health care provider role A health care provider role borne by a person trained to draw blood from a patient for clinical or medical testing, transfusions, donations, or research. Phlebotomists collect blood primarily by performing venipunctures. http://purl.obolibrary.org/obo/OBIB_0000226 anesthesiologist role http://purl.obolibrary.org/obo/OMRSE_00000012 health care provider role A health care provider role borne by a medical practitioner trained in anesthesia and perioperative medicine. http://purl.obolibrary.org/obo/OBIB_0000227 nurse anesthetist role http://purl.obolibrary.org/obo/OMRSE_00000014 nurse role A nurse role borne by a nurse who specializes in the administration of anesthesia. http://purl.obolibrary.org/obo/OBIB_0000232 name of person performing blood draw http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the collection of a blood specimen. http://purl.obolibrary.org/obo/OBIB_0000234 PAXgene DNA vacutainer http://purl.obolibrary.org/obo/OBI_0002088 specimen container A specimen container developed by PreAnalytiX that is intended to collect, anticoagulate, stabilize, transport, and store a venous whole blood sample for preparation of high quality DNA for use with molecular diagnostic test methods that require DNA. http://purl.obolibrary.org/obo/OBIB_0000235 PAXgene RNA vacutainer http://purl.obolibrary.org/obo/OBI_0002088 specimen container A specimen container developed by PreAnalytiX that contains a proprietary reagent for stabilization of intracellular RNA immediately upon collection. http://purl.obolibrary.org/obo/OBIB_0000236 blood specimen volume http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a volume measurement assay that has a blood specimen as evaluant. http://purl.obolibrary.org/obo/OBIB_0000238 comment from blood specimen collection http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information about the blood specimen or donor that is deemed relevant for the specimen collection process. http://purl.obolibrary.org/obo/OBIB_0000239 data and time of laboratory receipt of specimen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time at which the specimen was received in the laboratory for processing. http://purl.obolibrary.org/obo/OBIB_0000240 name of person receiving blood specimen in laboratory http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who received a blood specimen in the laboratory. http://purl.obolibrary.org/obo/OBIB_0000241 temperature in lab when blood specimen was received http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay occurring in a laboratory and performed when a blood specimen is received. http://purl.obolibrary.org/obo/OBIB_0000242 humidity in lab when blood specimen was received http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the output of an assay of humidity occurring in a laboratory and performed when a blood specimen is received. http://purl.obolibrary.org/obo/OBIB_0000243 vacutainer specimen barcode http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode A specimen barcode that is associated with a vacutainer. http://purl.obolibrary.org/obo/OBIB_0000244 time of specimen freezing at approximately -20 degrees C http://purl.obolibrary.org/obo/OBIB_0000724 time of specimen freezing A time of specimen freezing which occurred at approximately -20�_C. http://purl.obolibrary.org/obo/OBIB_0000245 time of specimen freezing at -70 to -80 degrees C http://purl.obolibrary.org/obo/OBIB_0000724 time of specimen freezing A time of specimen freezing which occurred at -75�_ �� 5�_C. http://purl.obolibrary.org/obo/OBIB_0000246 name of person storing specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who stored a specimen. http://purl.obolibrary.org/obo/OBIB_0000247 specimen was collected and stored in accordance with the specified SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating whether the specimen was collected and stored in accordance with the specified SOP. http://purl.obolibrary.org/obo/OBIB_0000248 comment from blood specimen storage http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information about the blood specimen or donor that is deemed relevant for the specimen storage process. http://purl.obolibrary.org/obo/OBIB_0000249 time of blood processing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a blood specimen was processed. http://purl.obolibrary.org/obo/OBIB_0000251 blood specimen volume in conical centrifuge tube http://purl.obolibrary.org/obo/OBIB_0000236 blood specimen volume A blood specimen volume of blood contained in a conical centrifuge tube. http://purl.obolibrary.org/obo/OBIB_0000252 blood plasma specimen barcode http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode A specimen barcode that is associated with a blood plasma specimen. http://purl.obolibrary.org/obo/OBIB_0000253 blood plasma specimen volume http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a volume measurement assay that has a blood plasma specimen as evaluant. http://purl.obolibrary.org/obo/OBIB_0000254 time of blood plasma specimen placement on dry ice http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a blood plasma specimen was placed on dry ice. http://purl.obolibrary.org/obo/OBIB_0000255 cryovial specimen barcode http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode A specimen barcode that is associated with a cryovial. http://purl.obolibrary.org/obo/OBIB_0000256 time of blood plasma specimen transfer to freezer http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a blood plasma specimen was transferred to a freezer. http://purl.obolibrary.org/obo/OBIB_0000257 name of person processing blood plasma specimen aliquots http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who processed a blood specimen to generate aliquots of blood plasma specimens. http://purl.obolibrary.org/obo/OBIB_0000258 name of person transferring blood plasma specimens to freezer http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who transferred blood plasma specimens to freezer. http://purl.obolibrary.org/obo/OBIB_0000259 specimen was processed in accordance with the specified SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating whether the specimen was processed in accordance with the specified SOP. http://purl.obolibrary.org/obo/OBIB_0000260 comment from blood specimen processing http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information about the blood specimen or donor that is deemed relevant for specimen processing. http://purl.obolibrary.org/obo/OBIB_0000261 presence of gross hemolysis of plasma observed http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating whether the presence of gross hemolysis of plasma was observed. http://purl.obolibrary.org/obo/OBIB_0000262 cell pellet volume http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a volume measurement assay that has a cell pellet as evaluant. http://purl.obolibrary.org/obo/OBIB_0000263 cell pellet specimen barcode http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode A specimen barcode that is associated with a cell pellet specimen. http://purl.obolibrary.org/obo/OBIB_0000264 time of completion of blood cell pellet processing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when processing of a blood cell pellet specimen was completed. http://purl.obolibrary.org/obo/OBIB_0000265 time of blood cell pellet transfer to storage http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when the blood cell pellet specimen was transferred to storage. http://purl.obolibrary.org/obo/OBIB_0000266 name of person processing blood cell pellet specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed processing of the blood cell pellet specimen. http://purl.obolibrary.org/obo/OBI_0002140 temperature measurement assay http://purl.obolibrary.org/obo/OBI_0000070 assay An assay to determine the temperature of an evaluant. http://purl.obolibrary.org/obo/IAO_0000646 postal code http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail. http://purl.obolibrary.org/obo/PATO_0000051 morphology http://purl.obolibrary.org/obo/PATO_0001241 physical object quality A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. http://purl.obolibrary.org/obo/PATO_0000117 size http://purl.obolibrary.org/obo/PATO_0000051 morphology A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. http://purl.obolibrary.org/obo/PATO_0000119 height http://purl.obolibrary.org/obo/PATO_0001708 1-D extent A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. http://purl.obolibrary.org/obo/PATO_0000128 weight http://purl.obolibrary.org/obo/PATO_0001018 physical quality A physical quality inhering in a bearer that has mass near a gravitational body. Important usage note: Note that this ontology has a class for a similar concept, mass (PATO:0000125). Mass and weight are not equivalent. For most use cases, the class mass is strongly preferred over weight. http://purl.obolibrary.org/obo/PATO_0000140 position http://purl.obolibrary.org/obo/PATO_0001018 physical quality A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. http://purl.obolibrary.org/obo/PATO_0000165 time http://purl.obolibrary.org/obo/PATO_0001018 physical quality A quality in which events occur in sequence. http://purl.obolibrary.org/obo/PATO_0000169 viability http://purl.obolibrary.org/obo/PATO_0001995 organismal quality An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. http://purl.obolibrary.org/obo/PATO_0001018 physical quality http://purl.obolibrary.org/obo/PATO_0001241 physical object quality A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. http://purl.obolibrary.org/obo/PATO_0001241 physical object quality http://purl.obolibrary.org/obo/BFO_0000019 quality A quality which inheres in a continuant. http://purl.obolibrary.org/obo/PATO_0001442 wholeness http://purl.obolibrary.org/obo/PATO_0000051 morphology A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. http://purl.obolibrary.org/obo/PATO_0001708 1-D extent http://purl.obolibrary.org/obo/PATO_0000117 size A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. http://purl.obolibrary.org/obo/PATO_0001710 3-D extent http://purl.obolibrary.org/obo/PATO_0000117 size A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. http://purl.obolibrary.org/obo/PATO_0015009 humidity http://purl.obolibrary.org/obo/PATO_0001018 physical quality A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. http://purl.obolibrary.org/obo/UBERON_0036149 suprapubic skin http://purl.obolibrary.org/obo/UBERON_0002097 skin of body Area of skin in the hypoastric region of the abdomen. http://purl.obolibrary.org/obo/OBI_0002138 temperature value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that specifies the temperature of some thing. http://purl.obolibrary.org/obo/OBI_0002139 volume value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that specifies the volume of some thing. http://purl.obolibrary.org/obo/OBI_0002141 volume measurement assay http://purl.obolibrary.org/obo/OBI_0000070 assay An assay to determine the volume of an evaluant. http://purl.obolibrary.org/obo/OBI_0002544 esophagogastric junction specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from the esophagogastric junction. http://purl.obolibrary.org/obo/OBI_0002545 ileum specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from ileum. http://purl.obolibrary.org/obo/OBI_0002546 liver specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from liver. http://purl.obolibrary.org/obo/OBI_0002547 minor salivary gland specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from minor salivary gland. http://purl.obolibrary.org/obo/OBI_0002548 omentum specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from omentum. http://purl.obolibrary.org/obo/OBI_0002549 ovary specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from female gonad. http://purl.obolibrary.org/obo/OBI_0002551 suprapubic skin specimen http://purl.obolibrary.org/obo/OBI_0002526 skin of body specimen A specimen that is derived from suprapubic skin. http://purl.obolibrary.org/obo/OBI_0002552 testis specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from testis. http://purl.obolibrary.org/obo/OBI_0002553 uterus specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from uterus. http://purl.obolibrary.org/obo/OBI_0002555 age group inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states an age bracket which, if met, makes an entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002556 minimum age value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specifcation that specifies the youngest age when specifying an age range. http://purl.obolibrary.org/obo/OBI_0002557 maximum age value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specifcation that specifies the oldest age when specifying an age range. http://purl.obolibrary.org/obo/OBI_0002558 use of medication inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states a a set of medications, which, if used by an entity, makes that entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002559 hospital patient inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion defines that a human being has to be a hospital patient to be suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002560 family status inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more family statuses, which, if met, makes a human being suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002561 sex inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more sexes which, if met, makes an entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002562 country of residence inclusion criteria http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more countries of residence which, if met, makes a human being suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002563 ethnicity inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criteria that defines and states one or more ethnicities which, if met, makes an entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/UBERON_0000057 urethra http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity The fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening. http://purl.obolibrary.org/obo/UBERON_0001264 pancreas http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. http://purl.obolibrary.org/obo/UBERON_0001557 upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea. http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that has temporal parts and that happens, unfolds or develops through time. http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable entity A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/BFO_0000015 process b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) http://purl.obolibrary.org/obo/BFO_0000145 relational quality http://purl.obolibrary.org/obo/BFO_0000019 quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) http://purl.obolibrary.org/obo/CLO_0000001 cell line cell http://purl.obolibrary.org/obo/OBI_0001866 secondary cultured cell A cultured cell that is part of a cell line - a stable and homogeneous population of cells with a common biological origin and propagation history in culture http://purl.obolibrary.org/obo/CLO_0000031 cell line http://purl.obolibrary.org/obo/OBI_0001905 secondary cultured cell population A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture). http://purl.obolibrary.org/obo/ENVO_00010483 environmental material http://purl.obolibrary.org/obo/BFO_0000040 material entity A portion of environmental material is a fiat object part which forms the medium or part of the medium of an environmental system. http://purl.obolibrary.org/obo/IAO_0000001 conditional specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity that specifies what should happen if the trigger condition is fulfilled. http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/IAO_0000009 datum label A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure. http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity that describes an action the bearer will take. http://purl.obolibrary.org/obo/IAO_0000009 datum label http://purl.obolibrary.org/obo/IAO_0000030 information content entity A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label http://purl.obolibrary.org/obo/IAO_0000028 symbol http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity. http://purl.obolibrary.org/obo/IAO_0000029 numeral http://purl.obolibrary.org/obo/IAO_0000028 symbol A symbol that denotes a number. http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A generically dependent continuant that is about some thing. http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label. http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. http://purl.obolibrary.org/obo/IAO_0000064 algorithm http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. http://purl.obolibrary.org/obo/IAO_0000078 curation status specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000100 data set http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets. http://purl.obolibrary.org/obo/IAO_0000101 image http://purl.obolibrary.org/obo/IAO_0000308 figure An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface. http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part http://purl.obolibrary.org/obo/IAO_0000027 data item Data about an ontology part is a data item about a part of an ontology, for example a term http://purl.obolibrary.org/obo/IAO_0000104 plan specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified. http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.obolibrary.org/obo/IAO_0000027 data item A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. http://purl.obolibrary.org/obo/IAO_0000129 version number http://purl.obolibrary.org/obo/IAO_0000028 symbol A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name. http://purl.obolibrary.org/obo/IAO_0000140 setting datum http://purl.obolibrary.org/obo/IAO_0000027 data item A settings datum is a datum that denotes some configuration of an instrument. http://purl.obolibrary.org/obo/IAO_0000144 conclusion textual entity http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers. http://purl.obolibrary.org/obo/IAO_0000178 material information bearer http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity in which a concretization of an information content entity inheres. http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000305 document title http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that names a document http://purl.obolibrary.org/obo/IAO_0000308 figure http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something. http://purl.obolibrary.org/obo/IAO_0000310 document http://purl.obolibrary.org/obo/IAO_0000030 information content entity A collection of information content entities intended to be understood together as a whole http://purl.obolibrary.org/obo/IAO_0000329 running title http://purl.obolibrary.org/obo/IAO_0000305 document title A shorter version of a document title http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measurement of length quality http://purl.obolibrary.org/obo/IAO_0000409 denotator type http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part A denotator type indicates how a term should be interpreted from an ontological perspective. http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measurement of mass quality http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measuring a temporal interval http://purl.obolibrary.org/obo/IAO_0000422 postal address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is used as directive to deliver something to a person, or organization http://purl.obolibrary.org/obo/IAO_0000572 documenting http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which a document is created or added to by including the specified input in it. http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process A process that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000017 regulatory role http://purl.obolibrary.org/obo/BFO_0000023 role a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body. http://purl.obolibrary.org/obo/OBI_0000047 processed material http://purl.obolibrary.org/obo/BFO_0000040 material entity Is a material entity that is created or changed during material processing. http://purl.obolibrary.org/obo/OBI_0000066 investigation http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). http://purl.obolibrary.org/obo/OBI_0000067 evaluant role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role http://purl.obolibrary.org/obo/OBI_0000079 culture medium http://purl.obolibrary.org/obo/OBI_0000047 processed material a processed material that provides the needed nourishment for microorganisms or cells grown in vitro. http://purl.obolibrary.org/obo/OBI_0000097 participant under investigation role http://purl.obolibrary.org/obo/BFO_0000023 role A role that is realized through the execution of a study design in which the bearer of the role participates and in which data about that bearer is collected. http://purl.obolibrary.org/obo/OBI_0000112 specimen role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation http://purl.obolibrary.org/obo/OBI_0000151 filter paper http://purl.obolibrary.org/obo/OBI_0000932 material separation device A device manufacture with the intent to provide a porous unsized paper used for filtering. http://purl.obolibrary.org/obo/OBI_0000181 population http://purl.obolibrary.org/obo/BFO_0000040 material entity a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area http://purl.obolibrary.org/obo/OBI_0000245 organization http://purl.obolibrary.org/obo/BFO_0000040 material entity An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. http://purl.obolibrary.org/obo/OBI_0000257 DNA extraction http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction A DNA extraction is a nucleic acid extraction where the desired output material is DNA. http://purl.obolibrary.org/obo/OBI_0000260 plan http://purl.obolibrary.org/obo/BFO_0000017 realizable entity A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process. http://purl.obolibrary.org/obo/OBI_0000272 protocol http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process. http://purl.obolibrary.org/obo/OBI_0000274 adding a material entity into a target http://purl.obolibrary.org/obo/OBI_0000652 material combination is a process with the objective to place a material entity bearing the 'material to be added role' into a material bearing the 'target of material addition role'. http://purl.obolibrary.org/obo/OBI_0000275 analyte role http://purl.obolibrary.org/obo/OBI_0002444 measurand role A measurand role borne by a molecular entity or an atom and realized in an analyte assay which achieves the objective to measure the magnitude/concentration/amount of the analyte in the entity bearing evaluant role. http://purl.obolibrary.org/obo/OBI_0000319 material to be added role http://purl.obolibrary.org/obo/BFO_0000023 role A role of a material entity that is realized in an "adding a material entity into a target" process where the bearer of the role is added into another material entity (the target). http://purl.obolibrary.org/obo/OBI_0000338 drawing a conclusion based on data http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion http://purl.obolibrary.org/obo/OBI_0000339 planning http://purl.obolibrary.org/obo/BFO_0000015 process a process of creating or modifying a plan specification http://purl.obolibrary.org/obo/OBI_0000370 contain function http://purl.obolibrary.org/obo/BFO_0000034 function A contain function is a function to constrain a material entities location in space http://purl.obolibrary.org/obo/OBI_0000371 heat function http://purl.obolibrary.org/obo/BFO_0000034 function A heat function is a function that increases the internal kinetic energy of a material http://purl.obolibrary.org/obo/OBI_0000372 material separation function http://purl.obolibrary.org/obo/BFO_0000034 function A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality. http://purl.obolibrary.org/obo/OBI_0000378 filter function http://purl.obolibrary.org/obo/OBI_0000372 material separation function A filter function is a function to prevent the flow of certain entities based on a quality or qualities of the entity while allowing entities which have different qualities to pass through http://purl.obolibrary.org/obo/OBI_0000379 mechanical function http://purl.obolibrary.org/obo/BFO_0000034 function A mechanical function is a function that is realised via mechanical work (through an certain amount of energy transferred by some force). http://purl.obolibrary.org/obo/OBI_0000383 transfer function http://purl.obolibrary.org/obo/BFO_0000034 function A transfer function is a function to displace a material from one location to another. http://purl.obolibrary.org/obo/OBI_0000387 cool function http://purl.obolibrary.org/obo/BFO_0000034 function A cool function is a function to decrease the internal kinetic energy of a material below the initial kinetic energy of that type of material. http://purl.obolibrary.org/obo/OBI_0000397 image acquisition function http://purl.obolibrary.org/obo/OBI_0000453 measure function An image acquisition function is a function to acquire an image of a material http://purl.obolibrary.org/obo/OBI_0000399 solid support function http://purl.obolibrary.org/obo/BFO_0000034 function A solid support function is a function of a device on which an entity is kept in a defined position and prevented in its movement http://purl.obolibrary.org/obo/OBI_0000401 environment control function http://purl.obolibrary.org/obo/BFO_0000034 function An environmental control function is a function that regulates a contained environment within specified parameter ranges. For example the control of light exposure, humidity and temperature. http://purl.obolibrary.org/obo/OBI_0000425 averaging objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation. http://purl.obolibrary.org/obo/OBI_0000434 adding material objective http://purl.obolibrary.org/obo/OBI_0000686 material combination objective is the specification of an objective to add a material into a target material. The adding is asymmetric in the sense that the target material largely retains its identity http://purl.obolibrary.org/obo/OBI_0000436 needle http://purl.obolibrary.org/obo/OBI_0000968 device A needle is a sharp, hollow device used to penetrate tissue or soft material. When attached to a syringe. it allows delivery of a specific volume of liquid or gaseous mixture. http://purl.obolibrary.org/obo/OBI_0000437 analyte measurement objective http://purl.obolibrary.org/obo/OBI_0000441 assay objective an assay objective to determine the presence or concentration of an analyte in the evaluant http://purl.obolibrary.org/obo/OBI_0000441 assay objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role) http://purl.obolibrary.org/obo/OBI_0000443 analyte assay http://purl.obolibrary.org/obo/OBI_0000070 assay An assay with the objective to capture information about the presence, concentration, or amount of an analyte in an evaluant. http://purl.obolibrary.org/obo/OBI_0000444 target of material addition role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role A role of a material entity that is realized in an "adding a material entity into a target" process where the bearer of the role (the target) receives the addition of another material entity. http://purl.obolibrary.org/obo/OBI_0000450 regulatory agency http://purl.obolibrary.org/obo/OBI_0000245 organization A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government. http://purl.obolibrary.org/obo/OBI_0000453 measure function http://purl.obolibrary.org/obo/BFO_0000034 function Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference. http://purl.obolibrary.org/obo/OBI_0000457 manufacturing http://purl.obolibrary.org/obo/OBI_0000094 material processing Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process http://purl.obolibrary.org/obo/OBI_0000458 manufacturing objective http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective is the objective to manufacture a material of a certain function (device) http://purl.obolibrary.org/obo/OBI_0000471 study design execution http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that carries out a study design http://purl.obolibrary.org/obo/OBI_0000571 manufacturer role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process. http://purl.obolibrary.org/obo/OBI_0000639 material separation objective http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective is an objective to transform a material entity into spatially separated components. http://purl.obolibrary.org/obo/OBI_0000651 urine specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism a portion of urine collected from an organism http://purl.obolibrary.org/obo/OBI_0000652 material combination http://purl.obolibrary.org/obo/OBI_0000094 material processing is a material processing with the objective to combine two or more material entities as input into a single material entity as output. http://purl.obolibrary.org/obo/OBI_0000655 blood specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen a material entity derived from a portion of blood collected from an organism http://purl.obolibrary.org/obo/OBI_0000671 sample from organism http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism a material obtained from an organism in order to be a representative of the whole http://purl.obolibrary.org/obo/OBI_0000678 portioning objective http://purl.obolibrary.org/obo/OBI_0000639 material separation objective A material separation objective aiming to separate material into multiple portions, each of which contains a similar composition of the input material. http://purl.obolibrary.org/obo/OBI_0000681 separation into different composition objective http://purl.obolibrary.org/obo/OBI_0000639 material separation objective A material separation objective aiming to separate a material entity that has parts of different types, and end with at least one output that is a material with parts of fewer types (modulo impurities). http://purl.obolibrary.org/obo/OBI_0000684 specimen collection objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification A objective specification to obtain a material entity for potential use as an input during an investigation. http://purl.obolibrary.org/obo/OBI_0000686 material combination objective http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective is an objective to obtain an output material that contains several input materials. http://purl.obolibrary.org/obo/OBI_0000740 material sample role http://purl.obolibrary.org/obo/OBI_0000112 specimen role A material sample role is a specimen role borne by a material entity that is the output of a material sampling process. http://purl.obolibrary.org/obo/OBI_0000806 material maintenance objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification maintains some or all of the qualities of a material over time. http://purl.obolibrary.org/obo/OBI_0000810 informed consent process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which a person or their legal representative is informed about key facts about potential risks and benefits of a process and makes a documented decision as to whether the person in question will participate. http://purl.obolibrary.org/obo/OBI_0000832 measurement device http://purl.obolibrary.org/obo/OBI_0000968 device A device in which a measure function inheres. http://purl.obolibrary.org/obo/OBI_0000835 manufacturer http://purl.obolibrary.org/obo/BFO_0000040 material entity A person or organization that has a manufacturer role http://purl.obolibrary.org/obo/OBI_0000838 material maintenance http://purl.obolibrary.org/obo/OBI_0000011 planned process a process with that achieves the objective to maintain some or all of the characteristics of an input material over time http://purl.obolibrary.org/obo/OBI_0000852 record of missing knowledge http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity created to indicate that information about something is not available to the person recording it. http://purl.obolibrary.org/obo/OBI_0000873 pre-mortem specimen http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status a specimen that was taken from a live organism http://purl.obolibrary.org/obo/OBI_0000880 RNA extract http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract an extract which is the output of an extraction process in which RNA molecules are isolated from a specimen. http://purl.obolibrary.org/obo/OBI_0000915 freezing storage http://purl.obolibrary.org/obo/OBI_0302893 storage A storage process in temperature that maintenance the frozen status of the stored entities. http://purl.obolibrary.org/obo/OBI_0000917 nasal swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen obtained using a cotton swab on a stick, passed up the nostril to obtain a sample of exudate and epithelial debris for microbiological or cellular examination. http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state A specimen that has been frozen in order to store it. http://purl.obolibrary.org/obo/OBI_0000927 lyophilization storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input material entity and output freeze dried material for long time storage http://purl.obolibrary.org/obo/OBI_0000932 material separation device http://purl.obolibrary.org/obo/OBI_0000968 device A device with a separation function realized in a planed process http://purl.obolibrary.org/obo/OBI_0000941 service consumer role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role a role which inheres in a person who uses a service http://purl.obolibrary.org/obo/OBI_0000947 service provider role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person http://purl.obolibrary.org/obo/OBI_0000950 paraffin specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a paraffin storage process in which specimen is embedded in paraffin http://purl.obolibrary.org/obo/OBI_0000953 processed specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been intentionally physically modified. http://purl.obolibrary.org/obo/OBI_0000960 reagent application function http://purl.obolibrary.org/obo/BFO_0000034 function A function that is realized when a reagent is automatically added to some research material. http://purl.obolibrary.org/obo/OBI_0000965 lyophilized specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a lyophilization storage process in which specimen is lyophilized for storage. http://purl.obolibrary.org/obo/OBI_0000967 container http://purl.obolibrary.org/obo/OBI_0000968 device A device that can be used to restrict the location of material entities over time http://purl.obolibrary.org/obo/OBI_0000971 fresh specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a specimen creation process used for an investigation without storage. http://purl.obolibrary.org/obo/OBI_0000977 paraffin storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input organism or anatomical entity and paraffin and output material embedded in paraffin for long term storage http://purl.obolibrary.org/obo/OBI_0000981 agar stab specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a process that cell culture inoculated into agar for long term storage. http://purl.obolibrary.org/obo/OBI_0001000 questionnaire http://purl.obolibrary.org/obo/IAO_0000310 document A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study. http://purl.obolibrary.org/obo/OBI_0001003 agar stab storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input cell culture and agar and output agar stab for long time storage http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract http://purl.obolibrary.org/obo/OBI_0000953 processed specimen An extract that is the output of an extraction process in which nucleic acid molecules are isolated from a specimen. http://purl.obolibrary.org/obo/OBI_0001034 environmental control device http://purl.obolibrary.org/obo/OBI_0000968 device An environmental control device is a device which has the function to control some aspect of the environment such as temperature, or humidity. http://purl.obolibrary.org/obo/OBI_0001051 DNA extract http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract The output of an extraction process in which DNA molecules are purified in order to exclude DNA from organellas. http://purl.obolibrary.org/obo/OBI_0001064 automatic tissue processor http://purl.obolibrary.org/obo/OBI_0000968 device A device for processing histological tissue having a tissue carrier basket suspended from a turntable overlying a plurality of beakers suspended from a carrier plate. The turntable is raised, indexed, and lowered by a suitable driving mechanism to move the tissue basket sequentially through the beakers. Timers can each be programmed to control the movement of the turntable to provide various different cycles for processing the tissue. Some of the beakers are received in individual thermal baths to heat and control the temperature of the substances received in the beakers for treating the tissue. http://purl.obolibrary.org/obo/OBI_0001156 age since planting measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since planting, the process of placing a plant in media (e.g. soil) to allow it to grow, which excludes sowing. http://purl.obolibrary.org/obo/OBI_0001157 age since hatching measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since hatching, the process of emergence from an egg. http://purl.obolibrary.org/obo/OBI_0001159 age since egg laying measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since egg laying, the process of the production of egg(s) by an organism. http://purl.obolibrary.org/obo/OBI_0001161 age since germination measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since germination, the process consisting of physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth. http://purl.obolibrary.org/obo/OBI_0001163 age since eclosion measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since eclosion, the process of emergence of an adult insect from its pupa or cocoon. http://purl.obolibrary.org/obo/OBI_0001164 age since sowing measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since sowing, the process of placing a seed or spore in some media with the intention to invoke germination. http://purl.obolibrary.org/obo/OBI_0001165 age since coitus measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since coitus, the process of copulation that occurs during the process of sexual reproduction. http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measurement of age of an organism http://purl.obolibrary.org/obo/OBI_0001168 age since fertilization measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since fertilization, the process of the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. http://purl.obolibrary.org/obo/OBI_0001169 age since birth measurement datum http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that is the result of the measurement of the age of an organism since birth, the process of emergence and separation of offspring from the mother. http://purl.obolibrary.org/obo/OBI_0001173 service http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which a service provider performs a task (i.e. a planned process) for a service consumer. http://purl.obolibrary.org/obo/OBI_0001404 genetic characteristics information http://purl.obolibrary.org/obo/IAO_0000027 data item a data item that is about genetic material including polymorphisms, disease alleles, and haplotypes. http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen for which it is known whether it has been subjected to storage of a specified type. http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been established to be taken from a live (pre-mortem) or dead (post-mortem) organism. http://purl.obolibrary.org/obo/OBI_0001528 material service http://purl.obolibrary.org/obo/OBI_0001173 service A service which has a material entity as specified input and/or specified output. http://purl.obolibrary.org/obo/OBI_0001547 material analysis service http://purl.obolibrary.org/obo/OBI_0001528 material service A service in which a service consumer provides some input material and a service provider performs some analysis of this material to generate data that is returned to the service consumer. http://purl.obolibrary.org/obo/OBI_0001580 material transport service http://purl.obolibrary.org/obo/OBI_0001528 material service A service in which a service provider facilitates the transport of some material entity to a specified destination for the service consumer. http://purl.obolibrary.org/obo/OBI_0001866 secondary cultured cell http://purl.obolibrary.org/obo/CL_0000010 cultured cell A cultured cell that has been passaged or derives from a cell that has been passaged in culture. http://purl.obolibrary.org/obo/OBI_0001867 establishing cell line http://purl.obolibrary.org/obo/OBI_0600036 establishing cell culture a process whereby a new type of cell line is created, either through passaging of a primary cell culture to relative genetic stability and compositional homogeneity, or through some experimental modification of an existing cell line to produce a new line with novel characteristics (e.g. immortalization or some other stable genetic modification, or selection of some defined subset). http://purl.obolibrary.org/obo/OBI_0001879 reagent http://purl.obolibrary.org/obo/OBI_0000047 processed material A biological or chemical entity that bears a reagent role in virtue of it being intended for application in a scientific technique to participate in (or have molecular parts that participate in) a chemical reaction that facilitates the generation of data about some distinct entity, or the generation of some distinct material specified output. http://purl.obolibrary.org/obo/OBI_0001909 conclusion based on data http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is inferred from data. http://purl.obolibrary.org/obo/OBI_0001912 cell freezing medium http://purl.obolibrary.org/obo/OBI_0000047 processed material A processed material that serves as a liquid vehicle for freezing cells for long term quiescent stroage, which contains chemicls needed to sustain cell viability across freeze-thaw cycles. http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that is specifies one category out of a fixed number of nominal categories http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that consists of two parts: a numeral and a unit label http://purl.obolibrary.org/obo/OBI_0001933 value specification http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies a value within a classification scheme or on a quantitative scale. http://purl.obolibrary.org/obo/OBI_0001936 molecular-labeled material http://purl.obolibrary.org/obo/OBI_0000047 processed material a material entity that is the specified output of an addition of molecular label process that aims to label some molecular target to allow for its detection in a detection of molecular label assay http://purl.obolibrary.org/obo/OBI_0002076 collection of specimens http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that has two or more specimens as its parts. http://purl.obolibrary.org/obo/OBI_0002087 containing a specimen function http://purl.obolibrary.org/obo/OBI_0000370 contain function A contain function that involves physical contact with a specimen. This function is typically performed in such a way that the specimen is usable for an investigation or assay. http://purl.obolibrary.org/obo/OBI_0002088 specimen container http://purl.obolibrary.org/obo/OBI_0000967 container A container with the function of containing a specimen. http://purl.obolibrary.org/obo/OBI_0002089 physical store http://purl.obolibrary.org/obo/OBI_0001034 environmental control device A container with an environmental control function. http://purl.obolibrary.org/obo/OBI_0002095 specimen family creation http://purl.obolibrary.org/obo/OBI_0000094 material processing A material processing that has as its input a specimen and as its output a collection of specimens. http://purl.obolibrary.org/obo/OBI_0002500 amniotic fluid specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from amniotic fluid. http://purl.obolibrary.org/obo/OBI_0002501 bile specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from bile. http://purl.obolibrary.org/obo/OBI_0002502 cerebrospinal fluid specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from cerbrospinal fluid. http://purl.obolibrary.org/obo/OBI_0002505 milk specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from milk. http://purl.obolibrary.org/obo/OBI_0002506 pericardial fluid specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from pericardial fluid. http://purl.obolibrary.org/obo/OBI_0002507 saliva specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from saliva. http://purl.obolibrary.org/obo/OBI_0002508 sputum specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from sputum. http://purl.obolibrary.org/obo/OBI_0002509 sweat specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from sweat. http://purl.obolibrary.org/obo/OBI_0002510 synovial fluid specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from synovial fluid. http://purl.obolibrary.org/obo/OBI_0002512 bone marrow specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from bone marrow. http://purl.obolibrary.org/obo/OBI_0002513 placenta specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from placenta. http://purl.obolibrary.org/obo/OBI_0002514 peritoneal fluid specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from peritoneal fluid. http://purl.obolibrary.org/obo/OBI_0002515 pleural fluid specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from pleural fluid. http://purl.obolibrary.org/obo/OBI_0002516 brain specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from brain. http://purl.obolibrary.org/obo/OBI_0002517 hair specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from hair. http://purl.obolibrary.org/obo/OBI_0002518 prostate gland specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from prostate gland. http://purl.obolibrary.org/obo/OBI_0002519 skeletal muscle tissue specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from skeletal muscle. http://purl.obolibrary.org/obo/OBI_0002520 heart specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from heart. http://purl.obolibrary.org/obo/OBI_0002522 adrenal gland specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from adrenal gland. http://purl.obolibrary.org/obo/OBI_0002524 urinary bladder specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from urinary bladder. http://purl.obolibrary.org/obo/OBI_0002525 tibial artery specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from tibial artery. http://purl.obolibrary.org/obo/OBI_0002527 pancreas specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from pancreas. http://purl.obolibrary.org/obo/OBI_0002528 stomach specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from stomach. http://purl.obolibrary.org/obo/OBI_0002529 pituitary gland specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from pituitary gland. http://purl.obolibrary.org/obo/OBI_0002530 adipose tissue specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from adipose tissue. http://purl.obolibrary.org/obo/OBI_0002532 esophagus mucosa specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from esophagus mucosa. http://purl.obolibrary.org/obo/OBI_0002533 colon specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from colon. http://purl.obolibrary.org/obo/OBI_0002534 lung specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from lung. http://purl.obolibrary.org/obo/OBI_0002537 thyroid gland specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from thyroid gland. http://purl.obolibrary.org/obo/OBI_0002539 tibial nerve specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from tibial nerve. http://purl.obolibrary.org/obo/OBI_0002540 coronary artery specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from coronary artery. http://purl.obolibrary.org/obo/OBI_0002541 spleen specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from spleen. http://purl.obolibrary.org/obo/OBI_0002542 aorta specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from aorta. http://purl.obolibrary.org/obo/OBI_0100017 blood serum specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A material entity which derives from blood and corresponds to blood plasma without fibrinogen or the other clotting factors. http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. http://purl.obolibrary.org/obo/OBI_0100051 specimen http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that has the specimen role. http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification to transformation input data into output data http://purl.obolibrary.org/obo/OBI_0200170 averaging data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation An averaging data transformation is a data transformation that has objective averaging. http://purl.obolibrary.org/obo/OBI_0302716 pool of specimens http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A pool of specimens is a mixture of a population of samples which have been gathered from one or more sample populations, obtained by the physical process of mixing individual specimens, e.g. mixing the DNA collected from the individual fish. http://purl.obolibrary.org/obo/OBI_0302874 edited document http://purl.obolibrary.org/obo/IAO_0000310 document A document which is the output of a document editing process http://purl.obolibrary.org/obo/OBI_0302884 extraction http://purl.obolibrary.org/obo/OBI_0600014 material component separation A material separation in which a desired component of an input material is separated from the remainder http://purl.obolibrary.org/obo/OBI_0302885 filtration http://purl.obolibrary.org/obo/OBI_0600014 material component separation filtration is a process which separates components suspended in a fluid based on granularity properties relying on a filter device http://purl.obolibrary.org/obo/OBI_0302886 centrifugation http://purl.obolibrary.org/obo/OBI_0600014 material component separation centrifugation is a process separating molecules by size or density using centrifugal forces generated by a spinning rotor. G-forces of several hundred thousand times gravity are generated in ultracentrifugation http://purl.obolibrary.org/obo/OBI_0302887 staining http://purl.obolibrary.org/obo/OBI_0000094 material processing Staining is a process which results in the addition a class-specific (DNA, proteins, lipids, carbohydrates) dye to a substrate to qualify or quantify the presence of a specific compound. http://purl.obolibrary.org/obo/OBI_0302893 storage http://purl.obolibrary.org/obo/OBI_0000838 material maintenance A maintenance process by which material entities that are not actively metabolizing are placed in well identified location and possibly under controlled environment in ad-hoc devices/structures in order to preserve and protect them from decay/alteration and maintain availability http://purl.obolibrary.org/obo/OBI_0302908 document editing http://purl.obolibrary.org/obo/OBI_0000011 planned process is a planned process with specified input original document and specified output edited document http://purl.obolibrary.org/obo/OBI_0302914 digital curation http://purl.obolibrary.org/obo/IAO_0000572 documenting Digital curation is the process of establishing and developing long term repositories of digital assets for current and future reference by researchers, scientists, and historians, and scholars generally. http://purl.obolibrary.org/obo/OBI_0400106 centrifuge http://purl.obolibrary.org/obo/OBI_0000932 material separation device A device with a rapidly rotating container that applies centrifugal force to its contents http://purl.obolibrary.org/obo/OBI_0400168 microtome http://purl.obolibrary.org/obo/OBI_0000932 material separation device A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand. http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion http://purl.obolibrary.org/obo/OBI_0500026 eligibility criterion an exclusion criterion (rule) is_a *eligibility criterion* which defines and states a condition which, if met, makes an entity unsuitable for a given task or participation in a given process. For instance, in a study protocol, exclusion criteria indicate the conditions that prospective subjects SHOULD NOT meet to be eligible for participation in a study http://purl.obolibrary.org/obo/OBI_0600004 human subject enrollment http://purl.obolibrary.org/obo/OBI_0001928 selection A planned process with the objective to obtain a population of human subjects to participate in an investigation by determining eligibility of subjects and obtaining informed consent. http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism http://purl.obolibrary.org/obo/OBI_0000659 specimen collection process a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation http://purl.obolibrary.org/obo/OBI_0600014 material component separation http://purl.obolibrary.org/obo/OBI_0000094 material processing a material processing in which components of an input material become segregated in space http://purl.obolibrary.org/obo/OBI_0600024 maintaining cell culture http://purl.obolibrary.org/obo/OBI_0000838 material maintenance a protocol application in which cells are kept alive in a defined environment outside of an organism. part of cell_culturing http://purl.obolibrary.org/obo/OBI_0600036 establishing cell culture http://purl.obolibrary.org/obo/OBI_0000094 material processing a process through which a new type of cell culture or cell line is created, either through the isolation and culture of one or more cells from a fresh source, or the deliberate experimental modification of an existing cell culture (e.g passaging a primary culture to become a secondary culture or line, or the immortalization or stable genetic modification of an existing culture or line). http://purl.obolibrary.org/obo/OBI_0600044 lavage http://purl.obolibrary.org/obo/OBI_0600014 material component separation A protocol application to separate cells and/or cellular secretions from an anatomical space by the introduction and removal of fluid http://purl.obolibrary.org/obo/OBI_0600052 dialysis http://purl.obolibrary.org/obo/OBI_0600014 material component separation a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction A RNA extraction is a nucleic acid extraction where the desired output material is RNA http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction http://purl.obolibrary.org/obo/OBI_0302884 extraction a material separation to recover the nucleic acid fraction of an input material http://purl.obolibrary.org/obo/OBI_1000024 cell pellet http://purl.obolibrary.org/obo/OBI_0000047 processed material A material entity which results from the aggregation of cells produced by the application of centrifugal force to a liquid containing cells in suspension http://purl.obolibrary.org/obo/OBI_1110109 target of material addition http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that receives the addition of another material entity in an “adding a material entity into a target” process. http://purl.obolibrary.org/obo/OGMS_0000015 clinical history http://purl.obolibrary.org/obo/IAO_0000030 information content entity A series of statements representing health-relevant qualities of a patient and of a patient's family. http://purl.obolibrary.org/obo/OGMS_0000023 phenotype http://purl.obolibrary.org/obo/BFO_0000019 quality A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. http://purl.obolibrary.org/obo/OGMS_0000031 disease http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. http://purl.obolibrary.org/obo/OGMS_0000090 treatment http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate a disorder, the signs and symptoms of a disorder, or a pathological process http://purl.obolibrary.org/obo/PATO_0000011 age http://purl.obolibrary.org/obo/PATO_0000165 time A time quality inhering in a bearer by virtue of how long the bearer has existed. http://purl.obolibrary.org/obo/PATO_0000047 biological sex http://purl.obolibrary.org/obo/PATO_0001995 organismal quality An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. http://purl.obolibrary.org/obo/PATO_0000122 length http://purl.obolibrary.org/obo/PATO_0001708 1-D extent A 1-D extent quality which is equal to the distance between two points. http://purl.obolibrary.org/obo/PATO_0000125 mass http://purl.obolibrary.org/obo/PATO_0001018 physical quality A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. http://purl.obolibrary.org/obo/PATO_0000146 temperature http://purl.obolibrary.org/obo/PATO_0001018 physical quality A physical quality of the thermal energy of a system. http://purl.obolibrary.org/obo/PATO_0000918 volume http://purl.obolibrary.org/obo/PATO_0001710 3-D extent A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. http://purl.obolibrary.org/obo/PATO_0001421 alive http://purl.obolibrary.org/obo/PATO_0000169 viability A viability quality inhering in a bearer by virtue of the bearer's condition before death. http://purl.obolibrary.org/obo/PATO_0001422 dead http://purl.obolibrary.org/obo/PATO_0000169 viability A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. http://purl.obolibrary.org/obo/PATO_0001985 frozen http://purl.obolibrary.org/obo/PATO_0000146 temperature A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. http://purl.obolibrary.org/obo/PATO_0001995 organismal quality http://purl.obolibrary.org/obo/PATO_0001241 physical object quality A quality that inheres in an entire organism or part of an organism. http://purl.obolibrary.org/obo/PR_000000001 protein http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof. http://purl.obolibrary.org/obo/SO_0000001 region http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids. http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the output of counting. http://purl.obolibrary.org/obo/APOLLO_SV_00000085 age data in age brackets data set http://purl.obolibrary.org/obo/IAO_0000100 data set A data set consisting of measurements of age organized in age brackets. http://purl.obolibrary.org/obo/IAO_0020010 dubbing process http://purl.obolibrary.org/obo/OBI_0000011 planned process A dubbing process is a planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity. http://purl.obolibrary.org/obo/IAO_0020015 personal name http://purl.obolibrary.org/obo/IAO_0020000 identifier A personal name is a proper name identifying an individual person. http://purl.obolibrary.org/obo/ICO_0000023 completely filled informed consent form http://purl.obolibrary.org/obo/ICO_0000001 informed consent form An informed consent form that has been filled with all required contents. http://purl.obolibrary.org/obo/ICO_0000024 partially filled informed consent form http://purl.obolibrary.org/obo/ICO_0000001 informed consent form An informed consent form that has been partially filled with required contents. http://purl.obolibrary.org/obo/OBIB_0000010 freezer shelf http://purl.obolibrary.org/obo/OBI_0000968 device A device that is part of a freezer and consists of a solid horizontal surface to keep material in the freezer on a flat surface. http://purl.obolibrary.org/obo/OBIB_0000011 discarding http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that gets rid of a material that is no longer useful or desirable. http://purl.obolibrary.org/obo/OBIB_0000012 human subject recuiter role http://purl.obolibrary.org/obo/OBI_0000116 worker role A worker role of recruiting human subjects to partcipate in a clinical investigation in which data about human subject is collected. http://purl.obolibrary.org/obo/OBIB_0000013 cryovial box http://purl.obolibrary.org/obo/OBI_0000967 container A device that is intended to hold cryovials. http://purl.obolibrary.org/obo/OBIB_0000014 trash container http://purl.obolibrary.org/obo/OBI_0000967 container A container that is used for discarded material. http://purl.obolibrary.org/obo/OBIB_0000015 freezer rack http://purl.obolibrary.org/obo/OBI_0000968 device A device that is part of a freezer for keeping material in the freezer in a defined position and prevents movement. http://purl.obolibrary.org/obo/OBIB_0000016 blood spot card box http://purl.obolibrary.org/obo/OBI_0000967 container A device that is designed to contain blood spot cards. http://purl.obolibrary.org/obo/OBIB_0000017 data confirm questionnaire http://purl.obolibrary.org/obo/OBI_0001000 questionnaire A questionnaire that comprises a set of questions about patient, such as height, weight, race, biological sex, clinical history, etc., which will be filled by a recruiter based on an Electronic Medical Record (EMR). http://purl.obolibrary.org/obo/OBIB_0000018 form filling http://purl.obolibrary.org/obo/OBI_0302908 document editing A document editing process in which one or more fields in a form are filled with related information, such as when answering a questionnare. http://purl.obolibrary.org/obo/OBIB_0000019 filled patient questionnaire http://purl.obolibrary.org/obo/OBIB_0000020 patient questionnaire A patient questionnaire which has been filled out by a patient. http://purl.obolibrary.org/obo/OBIB_0000020 patient questionnaire http://purl.obolibrary.org/obo/OBI_0001000 questionnaire A questionnaire that comprises a set of demographic and medical questions about a patient which will be filled by the patient or their legally authorized representative. http://purl.obolibrary.org/obo/OBIB_0000021 collection packet with specimen and information material http://purl.obolibrary.org/obo/OBIB_0000024 collection packet with specimen A collection packet which contains a container with a specimen and a form filled with information about the collected specimen and specimen source. http://purl.obolibrary.org/obo/OBIB_0000022 blood additive role http://purl.obolibrary.org/obo/OBI_0000319 material to be added role A material to be added role that is born by a chemical entity which is added into a blood collection containter to optimize specific blood component(s) preservation and/or separation. http://purl.obolibrary.org/obo/OBIB_0000023 lab technician role http://purl.obolibrary.org/obo/OBI_0000116 worker role A worker role that performs the practical hands-on work in laboratories and is realized during study design execution. http://purl.obolibrary.org/obo/OBIB_0000024 collection packet with specimen http://purl.obolibrary.org/obo/OBIB_0000028 collection packet A collection packet which contains a container with a specimen. http://purl.obolibrary.org/obo/OBIB_0000025 collection packet with empty container http://purl.obolibrary.org/obo/OBIB_0000028 collection packet A collection packet which contains an empty container that will be used for holding a specimen. http://purl.obolibrary.org/obo/OBIB_0000026 obsolete medication role http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A role borne by some material entity which can be delivered/administrated into some organism and the role is realized during a clinical treatment process aiming to treat symptoms, signs or diagnosed disease. http://purl.obolibrary.org/obo/OBIB_0000027 filled data confirm questionnaire http://purl.obolibrary.org/obo/OBIB_0000017 data confirm questionnaire A data confirm questionnaire which has been filled out by a human subject recruiter. http://purl.obolibrary.org/obo/OBIB_0000028 collection packet http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity used for specimen collection. It can contain a container to hold a specimen and material (e.g. paper) carrying information about the specimen and the specimen source (e.g. patient). http://purl.obolibrary.org/obo/OBIB_0000029 medication material http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is bearer of a medication role. http://purl.obolibrary.org/obo/OBIB_0000030 blood spot card http://purl.obolibrary.org/obo/OBI_0000967 container A device that is designed to collect, ship and store blood specimens in an easy and inexpensive way. http://purl.obolibrary.org/obo/OBIB_0000031 cryovial http://purl.obolibrary.org/obo/OBI_0000967 container A test tube that designed to store materials at very low temperatures. http://purl.obolibrary.org/obo/OBIB_0000032 vacutainer http://purl.obolibrary.org/obo/OBI_0000967 container A test tube which is either a sterile glass or plastic tube with a closure that is evacuated to create a vacuum inside the tube facilitating the draw of a predetermined volume of liquid. Most commonly used to draw a blood sample directly from the vein, these also are used to collect urine samples. Vacutainer tube may contain additives designed to stabilize and preserve the specimen prior to analytical testing. http://purl.obolibrary.org/obo/OBIB_0000033 specimen receiving http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process for receiving specimens such as into a laboratory. http://purl.obolibrary.org/obo/OBIB_0000034 adding specimen into a container http://purl.obolibrary.org/obo/OBI_0000274 adding a material entity into a target An adding a material entity into a target process where a collected specimen is added to a specimen container. (note, not used for other specimen process that produce new specimens) http://purl.obolibrary.org/obo/OBIB_0000035 blood spotting http://purl.obolibrary.org/obo/OBIB_0000034 adding specimen into a container An adding specimen into a container process that spots the blood from an organism on the blood spot card. http://purl.obolibrary.org/obo/OBIB_0000036 buffy coat specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A processed specimen which is the output of a density gradient centrifugation of an anticoagulated blood specimen that contains most of the white blood cells and platelets. http://purl.obolibrary.org/obo/OBIB_0000039 blood specimen on blood spot card http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A blood specimen that is located on a blood spot card. http://purl.obolibrary.org/obo/OBIB_0000040 collection packet with empty container and unfilled information material http://purl.obolibrary.org/obo/OBIB_0000028 collection packet A collection packet which contains a container without a specimen and an unfilled form that will be used to fill in information about specimen to be collected. http://purl.obolibrary.org/obo/OBIB_0000041 duration time of smoking regularly http://purl.obolibrary.org/obo/OBIB_0000053 duration time of smoking A duration time of smoking about how long a person has been smoking regularly. (better to have criteria of regularly mean, such as smoke everyday) http://purl.obolibrary.org/obo/OBIB_0000042 average daily use of cigarette datum http://purl.obolibrary.org/obo/OBI_0000679 average value An average value of use of cigarettes per day. http://purl.obolibrary.org/obo/OBIB_0000043 nicotine patch http://purl.obolibrary.org/obo/OBIB_0000048 nicotine material A processed material that contains nicotine in the form of a transdermal patch which releases nicotine into the body through the skin. It is commonly used as an aid in nicotine replacement therapy (NRT), a process for smoking cessation. http://purl.obolibrary.org/obo/OBIB_0000044 cigarette http://purl.obolibrary.org/obo/OBIB_0000057 tobacco material A processed material which is a small cylinder of finely cut tobacco leaves rolled in thin paper for smoking. http://purl.obolibrary.org/obo/OBIB_0000045 nicotine gum or lozenge http://purl.obolibrary.org/obo/OBIB_0000048 nicotine material A processed material contains nicotine in a form of a chewing gum or a candy-like tablet. It delivers nicotine to the body via absorption by the tissues of the mouth. It is commonly used as an aid in nicotine replacement therapy (NRT), a process for smoking cessation. http://purl.obolibrary.org/obo/OBIB_0000046 cigar http://purl.obolibrary.org/obo/OBIB_0000057 tobacco material A processed material which is a tightly-rolled bundle of dried and fermented tobacco that is ignited so that its smoke may be drawn into the mouth. http://purl.obolibrary.org/obo/OBIB_0000047 chewing tobacco http://purl.obolibrary.org/obo/OBIB_0000057 tobacco material A processed material which is a kind of smokeless tobacco product consumed by placing a portion of the tobacco between the cheek and gum or upper lip teeth and chewing. http://purl.obolibrary.org/obo/OBIB_0000049 smoking pipe http://purl.obolibrary.org/obo/OBI_0000967 container A device made to allow the user to inhale or taste smoke or vapor derived from the burning or vaporization of some substance. http://purl.obolibrary.org/obo/OBIB_0000050 nicotine e-cigarette http://purl.obolibrary.org/obo/OBIB_0000048 nicotine material A processed material that vaporizes a liquid solution containing nicotine and simulates tobacco smoking by producing an aerosol that resembles smoke. http://purl.obolibrary.org/obo/OBIB_0000051 smoking start date http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum which is the start date of a smoking behavior. http://purl.obolibrary.org/obo/OBIB_0000052 pipe smoking behavior http://www.ebi.ac.uk/efo/EFO_0004318 smoking behavior A smoking behavior that uses a smoking pipe to inhale or taste tobacco material. http://purl.obolibrary.org/obo/OBIB_0000053 duration time of smoking http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum about how long a person has been smoking. http://purl.obolibrary.org/obo/OBIB_0000054 smoking end date http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum which is the end date of a smoking behavior. http://purl.obolibrary.org/obo/OBIB_0000055 pipe tobacco http://purl.obolibrary.org/obo/OBIB_0000057 tobacco material A processed material which is made from tobacco for smoking tobacco using a pipe. http://purl.obolibrary.org/obo/OBIB_0000056 tobacco http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota A Eukaryota that is within the genus Nicotiana of the Solanaceae (nightshade) family. http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter http://purl.obolibrary.org/obo/BFO_0000015 process A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter http://purl.obolibrary.org/obo/OGMS_0000104 diagnostic process http://purl.obolibrary.org/obo/OBI_0000011 planned process A health care process that involves the interpretation of a clinical picture from a given patient (input) and the assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these (output). http://purl.obolibrary.org/obo/OMRSE_00000023 collection of humans http://purl.obolibrary.org/obo/PCO_0000000 collection of organisms An object aggregate all of whose components are human beings. http://purl.obolibrary.org/obo/OMRSE_00000033 aggregate of organizations http://purl.obolibrary.org/obo/BFO_0000040 material entity An object aggregate that is not itself an organization and whose members are only organizations that have some feature in common http://purl.obolibrary.org/obo/OMRSE_00000038 legal person role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law. http://www.ebi.ac.uk/efo/EFO_0004318 smoking behavior http://purl.obolibrary.org/obo/GO_0008150 biological_process Inhaling and exhaling the smoke of tobacco or something similar to tobacco. http://www.ebi.ac.uk/efo/EFO_0004774 chewing tobacco behavior http://purl.obolibrary.org/obo/GO_0008150 biological_process Mastication of tobacco, correlated with an increased risk of oral cancers. http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode http://purl.obolibrary.org/obo/OBIB_0000721 specimen ID A specimen barcode is a specimen identification number formatted as an optical machine-readable representation. http://purl.obolibrary.org/obo/OBIB_0000001 sample collection identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier A proper name that refers to a sample collection. http://purl.obolibrary.org/obo/OBIB_0000267 date of specimen placement on dry ice for transport http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the calendar date when a specimen was placed on dry ice for transport. http://purl.obolibrary.org/obo/OBIB_0000268 time of specimen placement on dry ice for transport http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a specimen was placed on dry ice for transport. http://purl.obolibrary.org/obo/OBIB_0000269 date of specimen freezing at -70 to -80 degrees C http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the calendar date when a specimen was stored at -75_ � 5_C. http://purl.obolibrary.org/obo/OBIB_0000273 specimen receiving organization http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by an organization that is the recipient of a specimen that is transported from another organization. http://purl.obolibrary.org/obo/OBIB_0000279 name of person receiving specimen shipment http://purl.obolibrary.org/obo/IAO_0000027 data item A personal name that designates the person who received the specimen that was transported from another organization. http://purl.obolibrary.org/obo/OBIB_0000280 specimen shipment received in good condition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating that the physical condition of a specimen upon receipt after transport was good. http://purl.obolibrary.org/obo/OBIB_0000281 specimen shipment received in poor condition http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity indicating that the physical condition of a specimen upon receipt after transport was poor. http://purl.obolibrary.org/obo/OBIB_0000282 comment on specimen integrity after transport http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information about the physical integrity or wholeness of the specimen that is deemed relevant for the specimen transport process. http://purl.obolibrary.org/obo/OBIB_0000283 date of specimen receipt for pathologist processing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the calendar date when a specimen arrives in the gross pathology room for processing and review. http://purl.obolibrary.org/obo/OBIB_0000284 time of receipt for pathologist processing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a specimen arrives in the gross pathology room for processing and review. http://purl.obolibrary.org/obo/OBIB_0000285 name of quality control inspector of specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed a quality control inspection of the specimen that is to be transported to another organization. http://purl.obolibrary.org/obo/OBIB_0000286 name of data entry person for tissue recovery form http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the data entry process for filling in a tissue recovery case report form. http://purl.obolibrary.org/obo/OBIB_0000287 name of team leader for filling out tissue recovery form http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who is the leader of the team responsible for entering the tissue recovery form data. http://purl.obolibrary.org/obo/OBIB_0000288 FFPE tissue processing SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for fixation of a tissue to the state where it is completely infiltrated with a suitable histological wax and can be embedded ready for section cutting on the microtome for a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000289 equipment maintained as per manufacturer recommendations http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether equipment was maintained following the manufacturers recommendations. http://purl.obolibrary.org/obo/OBIB_0000290 comment on maintenance discrepancy from manufacturer recommendations http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information about maintenance discrepancies from manufacturer recommendations. http://purl.obolibrary.org/obo/OBIB_0000291 FFPE clearing agent role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by a chemical that is realized in the formalin-fixed paraffin-embedded (FFPE) processes to remove alcohol used for specimen dehydration, remove stains, and prepare a specimen for infiltration medium. http://purl.obolibrary.org/obo/OBIB_0000292 adherence of alcohol stage duration to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether duration of the alcohol stage followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000293 FFPE alcohol stage duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of the alcohol stage in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000294 adherence of dehydration process duration to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether duration of the dehydration process followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000295 FFPE dehydration process duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of the dehydration process in the formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000296 adherence of dehydration process temperature to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether temperature of the dehydration process followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000297 FFPE dehydration process temperature http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed on a specimen in alcohol during the dehydration process in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000298 adherence of stage and replicate numbers to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the number of stages and replicates followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000299 number of FFPE stages/replicates http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the number of stages and replicates in a FFPE process. http://purl.obolibrary.org/obo/OBIB_0000300 adherence of duration in clearing agent to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the duration in clearing agent followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000301 FFPE clearing agent duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration in clearing agent in the formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000302 adherence of temperature of clearing agent to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the temperature of clearing agent followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000303 FFPE clearing agent temperature http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed on a specimen in clearing agent in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000304 adherence to paraffin impregnation method in FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the paraffin impregnation method followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000305 FFPE paraffin impregnation method http://purl.obolibrary.org/obo/OBI_0000272 protocol A protocol for the paraffin impregnation step of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000306 adherence of paraffin temperature to FFPE tissue processing SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the paraffin temperature followed that prescribed in the FFPE tissue processing SOP. http://purl.obolibrary.org/obo/OBIB_0000307 FFPE paraffin temperature http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed on paraffin in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000308 comment on FFPE tissue processing http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to tissue processing in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000309 FFPE tissue paraffin embedding SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the paraffin embedding of a formalin-fixed paraffin-embedded (FFPE) tissue. http://purl.obolibrary.org/obo/OBIB_0000310 FFPE paraffin processing for embedding temperature http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed during the paraffin processing for embedding in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000311 fresh paraffin http://purl.obolibrary.org/obo/DRON_00015464 Paraffin A paraffin that has not been previously used or recycled. http://purl.obolibrary.org/obo/OBIB_0000312 age of paraffin http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of an age measurement assay performed on paraffin. http://purl.obolibrary.org/obo/OBIB_0000313 total time FFPE freshly poured blocks were cooled http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the total time that freshly poured blocks were cooled in the formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000314 FFPE tissue block handling, tracking, and storage SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the handling, tracking, and storing of a formalin-fixed paraffin-embedded (FFPE) tissue block. http://purl.obolibrary.org/obo/OBIB_0000315 adherence to FFPE tissue block storage SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether the FFPE tissue block storage SOP was followed. http://purl.obolibrary.org/obo/OBIB_0000316 comment on FFPE tissue block storage http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to storage of a formalin-fixed paraffin-embedded (FFPE) tissue block. http://purl.obolibrary.org/obo/OBIB_0000317 comment on paraffin embedding of FFPE tissue http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to paraffin embedding of a formalin-fixed paraffin-embedded (FFPE) tissue. http://purl.obolibrary.org/obo/OBIB_0000319 FFPE tissue section preparation SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000320 microtome blade age http://purl.obolibrary.org/obo/PATO_0000011 age An age that inheres in a microtome blade. http://purl.obolibrary.org/obo/OBIB_0000321 fresh microtome blade http://purl.obolibrary.org/obo/OBIB_0000320 microtome blade age A microtome blade age that indicates that the microtome blade is as new as possible. http://purl.obolibrary.org/obo/OBIB_0000322 preparation of FFPE block face for sectioning protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol A protocol describing the preparation on the faced block prior to sectioning of a formalin-fixed paraffin-embedded (FFPE) tissue. http://purl.obolibrary.org/obo/OBIB_0000326 FFPE water bath temperature http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed on a water bath used in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000327 microtome maintenance frequency http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates the frequency with which microtome maintenance is performed and recorded. http://purl.obolibrary.org/obo/OBIB_0000328 daily microtome maintenance http://purl.obolibrary.org/obo/OBIB_0000327 microtome maintenance frequency A microtome maintenance frequency that indicates that microtome maintenance is performed and recorded daily. http://purl.obolibrary.org/obo/OBIB_0000329 comment on deviations from microtome daily maintenance SOP http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information about deviations from a microtome daily maintenance standard operating procedure. http://purl.obolibrary.org/obo/OBIB_0000330 water bath maintenance frequency http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates the frequency with which water bath maintenance is performed and recorded. http://purl.obolibrary.org/obo/OBIB_0000331 daily water bath maintenance http://purl.obolibrary.org/obo/OBIB_0000330 water bath maintenance frequency A water bath maintenance frequency that indicates that microtome maintenance is performed and recorded daily. http://purl.obolibrary.org/obo/OBIB_0000332 comment on deviations from water bath daily maintenance SOP http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information about deviations from a water bath daily maintenance standard operating procedure. http://purl.obolibrary.org/obo/OBIB_0000333 comment on preparation of FFPE tissue section http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to preparation of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000334 FFPE tissue section H&E staining and mounting SOP http://purl.obolibrary.org/obo/OBIB_0000070 standard operating procedure A standard operating procedure for the hematoxylin and eosin (H&E) staining and slide mounting of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000335 FFPE tissue section H&E staining in oven duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration in an oven for the hematoxylin and eosin staining of a formalin-fixed paraffin-embedded (FFPE) tissue section. http://purl.obolibrary.org/obo/OBIB_0000336 oven temperature during FFPE tissue section H&E staining http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay performed on a oven during a formalin-fixed paraffin-embedded (FFPE) tissue section hematoxylin and eosin (H&E) staining. http://purl.obolibrary.org/obo/OBIB_0000341 manual FFPE tissue section H&E deparaffinization http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving the manual performance of the FFPE tissue section H&E deparaffinization protocol. http://purl.obolibrary.org/obo/OBIB_0000342 manual FFPE tissue section H&E staining http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving the manual performance of the FFPE tissue section H&E staining protocol. http://purl.obolibrary.org/obo/OBIB_0000343 manual FFPE tissue section H&E clearing http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving the manual performance of the FFPE tissue section H&E clearing protocol. http://purl.obolibrary.org/obo/OBIB_0000344 manual FFPE tissue section H&E cover slipping http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process involving the manual performance of the FFPE tissue section H&E cover slip protocol. http://purl.obolibrary.org/obo/OBIB_0000345 comment on preparation of FFPE H&E stained slide http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to the preparation of a formalin-fixed paraffin-embedded (FFPE) hematoxylin and eosin (H&E) stained slide. http://purl.obolibrary.org/obo/OBIB_0000346 H&E staining equipment maintenance performed and recorded frequency http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the frequency with which hematoxylin and eosin (H&E) staining equipment maintenance is performed and recorded. http://purl.obolibrary.org/obo/OBIB_0000347 H&E staining equipment maintenance performed and recorded frequency value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is used to record the frequency with which hematoxylin and eosin (H&E) staining equipment maintenance is performed and recorded. Categories include daily, weekly, bi-monthly, and per SOP. http://purl.obolibrary.org/obo/OBIB_0000348 comment on deviations from H&E equipment maintenance SOP http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information about deviations from a hemtoxylin and eosin (H&E) equipment maintenance standard operating procedure. http://purl.obolibrary.org/obo/OBIB_0000349 specimen randomization key ID http://purl.obolibrary.org/obo/FLU_0001019 specimen barcode A specimen barcode associated with the specific chart (key) used to randomly assign specimens to one of several distinct experimental protocols. http://purl.obolibrary.org/obo/OBIB_0000351 transplant alert associated with specimen donor http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is a notification within a clinical data repository that a specimen donor was a transplant recipient. http://purl.obolibrary.org/obo/OBIB_0000352 serology alert associated with specimen donor http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is a notification within a clinical data repository that specimen donor serology results include positive infectious disease data. http://purl.obolibrary.org/obo/OBIB_0000353 data and time parent specimen ID was recorded http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time at which the parent specimen ID was recorded. http://purl.obolibrary.org/obo/OBIB_0000354 comment on tissue specimen processing http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information deemed relevant for tissue specimen processing. http://purl.obolibrary.org/obo/OBIB_0000359 time specimen place in stabilizer http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a specimen was placed in a container with stabilizing reagent. http://purl.obolibrary.org/obo/OBIB_0000361 data and time specimen was frozen in liquid nitrogen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time at which a specimen was frozen by placement in liguid nitrogen. http://purl.obolibrary.org/obo/OBIB_0000362 weight of frozen tissue specimen http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum A mass measurement datum that is the result of measuring the weight of a frozen tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000363 FFPE fixation protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol A protocol for the fixation step of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000364 FFPE fixation delay protocol http://purl.obolibrary.org/obo/OBIB_0000363 FFPE fixation protocol A FFPE fixation protocol that specifies the planned delay to fixation time. http://purl.obolibrary.org/obo/OBIB_0000365 FFPE tissue cassette ID http://purl.obolibrary.org/obo/OBIB_0000721 specimen ID A specimen ID that specifically identifies a particular tissue cassete used in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000366 data and time FFPE tissue cassette ID was recorded http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time at which the FFPE tissue cassette ID was recorded. http://purl.obolibrary.org/obo/OBIB_0000367 date and time FFPE tissue cassette placed in fixative http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue cassette was placed in fixative as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000368 placement of tissue cassette in FFPE fixative delay duration http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of the the planned delay of placing the tissue cassette in fixative in the formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000369 date and time FFPE tissue cassette placed in processor http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue cassette was placed in a tissue processor as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000370 date and time FFPE tissue processor cycle ended http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue processor cycle ended as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000371 time in FFPE fixative measurement http://purl.obolibrary.org/obo/OBIB_0000060 time in fixative measurement A time in fixative measurement that states the duration during which a specimen was submerged in fixative as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000372 date and time FFPE tissue cassette removed from processor http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue cassette was removed from a tissue processor as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000373 date and time FFPE tissue embedding started http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue embedding started as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000374 measurement of time between FFPE tissue processor cycle completion and embedding http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time between FFPE tissue processor cycle completion and embedding in a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000375 date and time FFPE tissue cassette was frozen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue cassette was frozen as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000377 FFPE freezing by dry ice protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol A FFPE freezing protocol that involves the use of dry ice. http://purl.obolibrary.org/obo/OBIB_0000378 FFPE freezing by LN2 vapor phase protocol http://purl.obolibrary.org/obo/OBI_0000272 protocol A FFPE freezing protocol that involves the use of liquid nitrogen vapor phase. http://purl.obolibrary.org/obo/OBIB_0000379 date and time FFPE tissue cassette transferred to storage http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a tissue cassette was transferred to storage after a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000380 name of dissector of normal adjacent tissue to tumor for FFPE http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the dissection of a normal tissue adjacent to a tumor for a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000381 specimen was processed in accordance with the FFPE SOP http://purl.obolibrary.org/obo/OBIB_0000259 specimen was processed in accordance with the specified SOP A specimen was processed in accordance with the specified SOP where the specified SOP is for a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000382 date and time FFPE tissue was preserved http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the date and time when a specimen tissue was fixed or frozen as part of a formalin-fixed paraffin-embedded (FFPE) process. http://purl.obolibrary.org/obo/OBIB_0000383 specimen was processed in accordance with the FFPE SOP including <1 hour delay to fixation and 23 hour time in fixative http://purl.obolibrary.org/obo/OBIB_0000259 specimen was processed in accordance with the specified SOP A specimen was processed in accordance with the specified SOP where the specified SOP is for a formalin-fixed paraffin-embedded (FFPE) process and includes less than 1 hour delay in fixation and 23 hour time in fixative. http://purl.obolibrary.org/obo/OBIB_0000384 comment on procurement site restriction http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement made in regards to all non-consent issues related to or creating a limitation on tissues that can be procured including tissue type and reason for restriction. http://purl.obolibrary.org/obo/OBIB_0000385 specimen image ID http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that specifically identifies a particular specimen image. http://purl.obolibrary.org/obo/OBIB_0000386 comment on FFPE slide image http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to an image from a formalin-fixed paraffin-embedded (FFPE) slide. http://purl.obolibrary.org/obo/OBIB_0000388 date of submission of pathology case summary report http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when a pathology case summary report was submitted. http://purl.obolibrary.org/obo/OBIB_0000390 date of review of pathology case summary report http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when a pathology case summary report was reviewed. http://purl.obolibrary.org/obo/OBIB_0000391 pathologist submitted specimen procurement feedback http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement that was submitted as feedback by a pathologist http://purl.obolibrary.org/obo/OBIB_0000392 greatest tumor dimension on slide http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum A length measurement datum that is the result of measuring the maximum length of a tumor specimen as presented on a slide. http://purl.obolibrary.org/obo/OBIB_0000393 percentage of cross-sectional surface area of entire slide composed of tumor focus http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of cross-sectional surface area of an entire specimen slide composed of tumor focus including necrotic tumor. http://purl.obolibrary.org/obo/OBIB_0000394 percentage of tumor cellularity by cell count of the entire slide. http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of tumor nuclei by cell count of the entire specimen slide (number of tumor epithelial cell nuclei as compared to all cell nuclei). http://purl.obolibrary.org/obo/OBIB_0000395 percentage of cross-sectional surface area of entire slide composed of necrotic tissue http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of cross-sectional surface area of an entire specimen slide that is composed of necrotic tissue. http://purl.obolibrary.org/obo/OBIB_0000396 histologic profile quantitative assessment of tumor slide specimen surface area http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is made up of percentages of different histology-based assessments of a tumor slide specimen that in aggregate describe the total tumor surface area (i.e. add up to 100%). http://purl.obolibrary.org/obo/OBIB_0000397 percentage of viable tumor slide specimen by surface area http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of a tumor slide specimen that is viable based on surface area not including stroma. http://purl.obolibrary.org/obo/OBIB_0000398 percentage of necrotic tumor slide specimen by surface area http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of a tumor slide specimen that is necrotic based on surface area. http://purl.obolibrary.org/obo/OBIB_0000399 percentage of tumor slide specimen stroma by surface area http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of a tumor slide specimen that is stroma based on surface area. http://purl.obolibrary.org/obo/OBIB_0000400 percentage of non-cellular component of tumor slide specimen by surface area http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of a tumor slide specimen that is non-cellular based on surface area. http://purl.obolibrary.org/obo/OBIB_0000401 non-cellular component of tumor slide specimen description http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes the non-cellular component of a tumor slide specimen. http://purl.obolibrary.org/obo/OBIB_0000402 confirmation of histologic type of FFPE H&E tumor slide http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the local pathology review of a formalin-fixed paraffin-embedded (FFPE) hematoxylin and eosin (H&E)-stained tumor tissue slide confirmed the histological type. http://purl.obolibrary.org/obo/OBIB_0000403 FFPE slide meets necrosis percentage and tumor content criteria http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a formalin-fixed paraffin-embedded (FFPE) slide meets the microscopic analysis criteria with respect to necrosis percentage and tumor content. http://purl.obolibrary.org/obo/OBIB_0000404 FFPE slide findings that do not meet microscopic analysis criteria http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes findings upon review of a formalin-fixed paraffin-embedded (FFPE) slide that do not meet microscopic analysis criteria. http://purl.obolibrary.org/obo/OBIB_0000405 comment from pathology review of FFPE slide http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to a review by a pathologist of a formalin-fixed paraffin-embedded (FFPE) slide. http://purl.obolibrary.org/obo/OBIB_0000406 FFPE slide consistent with findings of diagnostic pathology report http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a formalin-fixed paraffin-embedded (FFPE) slide was consistent with findings of diagnostic pathology report. http://purl.obolibrary.org/obo/OBIB_0000407 FFPE slide inconsistencies with findings of diagnostic pathology report http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes inconsistencies with findings of diagnostic pathology report upon review of a formalin-fixed paraffin-embedded (FFPE) slide. http://purl.obolibrary.org/obo/OBIB_0000408 name of reviewing pathologist at organization conducting specimen collection http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who served as the pathologist reviewing a specimen slide at an organization conducting specimen collection from organisms. http://purl.obolibrary.org/obo/OBIB_0000409 date of FFPE slide review by the pathologist http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when a formalin-fixed paraffin-embedded (FFPE) slide was reviewed by a pathologist. http://purl.obolibrary.org/obo/OBIB_0000410 name of data entry person for local pathology review form http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the data entry process for filling in a local pathology review form. http://purl.obolibrary.org/obo/OBIB_0000411 presence of sarcomatoid features on specimen slide http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether examination of a tissue specimen slide revealed the presence of sarcomatoid features. http://purl.obolibrary.org/obo/OBIB_0000412 sarcomatoid features observed on FFPE slide http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes sarcomatoid features observed on a formalin-fixed paraffin-embedded (FFPE) slide. http://purl.obolibrary.org/obo/OBIB_0000413 name of person in gross room receiving OR specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who received a specimen in a pathology gross room from an associated operating room (OR). http://purl.obolibrary.org/obo/OBIB_0000414 specimen transport from OR to gross room SOP http://purl.obolibrary.org/obo/OBIB_0000071 specimen transport SOP A specimen transport SOP governing the transport of tissue from the operating room (OR) to the pathology gross room. http://purl.obolibrary.org/obo/OBIB_0000415 specimen transport from OR to gross room was performed as per SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether transport of tissue from the operating room (OR) to the pathology gross room was performed in accordance with the relevant standard operating procedure (SOP). http://purl.obolibrary.org/obo/OBIB_0000416 specimen transport from OR to gross room issues or deviations from SOP http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes issues with the transport of tissue from the operating room (OR) to the pathology gross room or deviations from the relevant standard operating procedure (SOP). http://purl.obolibrary.org/obo/OBIB_0000417 temperature in gross room when specimen arrived from OR http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the output of a temperature measurement assay occurring in a pathology gross room and performed when a specimen arrived from the operating room (OR). http://purl.obolibrary.org/obo/OBIB_0000418 humidity in gross room when specimen arrived from OR http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the output of an assay of humidity occurring in a pathology gross room and performed when a specimen arrived from the operating room (OR). http://purl.obolibrary.org/obo/OBIB_0000419 name of performer of gross evaluation of resected tissue specimen http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who performed the gross evaluation of a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000421 gross appearance of disease in resected tissue http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether gross appearance of disease was observed in a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000422 comment on gross evaluation of resected tissue specimen http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to gross evaluation of a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000423 gross diagnosis of resected tissue http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis A diagnosis that is based on the gross evaluation of a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000424 photograph of tissue was taken in pathology gross room http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a photograph was taken in the pathology gross room of a resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000425 reason for not taking a photograph of resected tissue in pathology gross room http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes the reason no photographs were taken of a resected tissue specimen in the pathology gross room. http://purl.obolibrary.org/obo/OBIB_0000426 pathology ink used on resected tissue specimen http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether pathology ink was used to mark the resected tissue specimen. http://purl.obolibrary.org/obo/OBIB_0000428 tumor tissue was released to the biobank http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a tumor tissue specimen was released to a biobank. http://purl.obolibrary.org/obo/OBIB_0000429 explanation of why tumor tissue specimen was not released to a biobank http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that describes the reason why a tumor tissue specimen was not released to a biobank. http://purl.obolibrary.org/obo/OBIB_0000430 percentage of gross area of necrosis of a specimen sent to biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of gross area of necrosis of a specimen sent to a biobank. http://purl.obolibrary.org/obo/OBIB_0000431 percentage of tumor content of specimen sent to biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is the result of determining the percentage of tumor content of a specimen sent to a biobank. http://purl.obolibrary.org/obo/OBIB_0000432 second piece of tumor tissue was collected http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a second piece of tumor was collected and released to a biobank. http://purl.obolibrary.org/obo/OBIB_0000433 dimensions of each specimen meet the criteria specified within the relevant tissue procurement SOP http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the dimensions of each specimen meet the criteria specified within the relevant tissue procurement standard operating procedure (SOP). http://purl.obolibrary.org/obo/OBIB_0000434 comment on deviations in specimen dimensions from a tissue procurement SOP http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states information relevant to deviations from a tissue procurement SOP with regards to specimen dimensions. http://purl.obolibrary.org/obo/OBIB_0000435 normal adjacent tissue released to the biobank in addition to tumor tissue http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether normal adjacent tissue was released to the biobank in addition to the tumor tissue. http://purl.obolibrary.org/obo/OBIB_0000436 time of specimen transfer from pathology gross room to a biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item indicating the time when a specimen was transferred from a pathology gross room to a biobank. http://purl.obolibrary.org/obo/OBIB_0000438 no recurrence of tumor http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about the status of a tumor and indicates that there has not been a recurrence. http://purl.obolibrary.org/obo/OBIB_0000439 follow-up on donor outcome comment from tissue procurement http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement A comment from tissue procurement that was submitted as part of a follow-up documenting donor outcome after initial specimen collection. http://purl.obolibrary.org/obo/OBIB_0000440 participant signed and dated informed consent form http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the participant signed and dated a specified informed consent form. http://purl.obolibrary.org/obo/OBIB_0000442 minimum required pre-operative RNA and DNA PAXgene tubes were collected http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the minimum required pre-operative RNA and DNA PAXgene tubes were collected from a donor. http://purl.obolibrary.org/obo/OBIB_0000443 desired plasma and serum aliquots were obtained http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the desired plasma and serum aliquots were obtained from a specimen donor. http://purl.obolibrary.org/obo/OBIB_0000444 top priority tumor specimen was obtained and processed with a particular FFPE fixation delay protocol http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a tumor specimen was obtained and processed with a particular FFPE fixation delay protocol to meet the top priority for tissue procurement. http://purl.obolibrary.org/obo/OBIB_0000445 additional tumor specimen was obtained and processed with a particular FFPE fixation delay protocol http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether a tumor specimen was obtained and processed with a particular FFPE fixation delay protocol other than meeting the top priority for tissue procurement. http://purl.obolibrary.org/obo/OBIB_0000446 local pathology review of QC FFPE tumor tissue H&E slide was completed http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the local pathology review of a hematoxylin (H&E) slide derived from a quality control (QC) formalin-fixed paraffin-embedded (FFPE) tumor tissue was completed. http://purl.obolibrary.org/obo/OBIB_0000447 local pathology review was consistent with site of tissue procurement diagnostic pathology report http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the local pathology review was consistent with the findings of the diagnostic pathology report from the site of specimen collection from a donor. http://purl.obolibrary.org/obo/OBIB_0000449 tumor specimen satisfied criteria of necrosis percentage and tumor content http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is an indicator of whether the tumor specimen obtained satisfied criteria of necrosis percentage and tumor content of tumor cells by surface area. http://purl.obolibrary.org/obo/OBIB_0000457 research authorization for post mortem specimen donation http://purl.obolibrary.org/obo/ICO_0000046 act of authorizing An authorization in which a legally authorized individual is asked to give permission for general research for post mortem specimen donation from a person they represent. http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation http://purl.obolibrary.org/obo/ICO_0000075 obsolete authorization document An authorization documentation that is the output of a research authorization for post mortem specimen donation. http://purl.obolibrary.org/obo/OBIB_0000460 research authorization for post mortem specimen donation was obtained http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether research authorization for post mortem specimen donation was obtained. http://purl.obolibrary.org/obo/OBIB_0000475 date that research authorization for post mortem specimen donation was witnessed http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the calendar date on which the signing of the research authorization for post mortem specimen donation by the legally authorized individual was witnessed. http://purl.obolibrary.org/obo/OBIB_0000481 relationship between person signing research authorization and specimen donor http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant A relationship that may be biological or legal, between the specimen donor and the legally authorized representative who signed the research authorization. http://purl.obolibrary.org/obo/OBIB_0000484 post mortem donor role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by a person who has died from whom specimens are collected. http://purl.obolibrary.org/obo/OBIB_0000485 age of specimen donor at time that authorization from legally authorized representative was obtained http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum that indicates the age of the specimen donor at the time that authorization from their legally authorized representative was obtained. http://purl.obolibrary.org/obo/OBIB_0000493 authorization not obtained for whole brain donation http://purl.obolibrary.org/obo/OBIB_0000490 authorization documentation for postmortem specimen donation for a specified purpose An authorization documentation for post mortem specimen donation in which authorization is not obtained for whole brain donation. http://purl.obolibrary.org/obo/OBIB_0000495 presence of metastatic tumor exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether a metastatic tumor is present, which if met, makes an individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBIB_0000496 presence of a tumor larger than a specified size exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether a tumor is larger than a specified size, which if met, makes an individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBIB_0000497 authorization to collect of minimum number of organ/tissue types for a specific study inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines whether the specimen donor has provided authorization to allow for the minimum number of organs/tissue types for a specific study to be collected, which when met, makes a specimen donor suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBIB_0000498 tissue collection timing and placed in fixative inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that is defined by whether it is likely that tissue collection can be started AND the first tissue can be placed in fixative within a specified period of time from cardiac cessation or recorded time of death (observed or presumed) for a specimen donor, which if met, makes a specimen donor suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBIB_0000499 time since radiation therapy was received prior to surgery http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since radiation therapy prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000500 time since chemotherapy was received prior to surgery http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since chemotherapy prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000501 time since immunotherapy was received prior to surgery http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since immunotherapy prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000502 time since hormonal therapy was received prior to surgery http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since hormonal therapy prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000503 date of radiation therapy prior to surgery http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when radiation therapy was received prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000504 date of chemotherapy prior to surgery http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when chemotherapy was received prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000505 date of immunotherapy prior to surgery http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when immunotherapy was received prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000506 date of hormonal therapy prior to surgery http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the calendar date when hormonal therapy was received prior to surgery. http://purl.obolibrary.org/obo/OBIB_0000507 lifelong non-drinker of alcohol http://purl.obolibrary.org/obo/NCIT_C81229 Alcohol Use History An Alcohol Use History in which there is no alcohol consumption. http://purl.obolibrary.org/obo/OBIB_0000508 current non-drinker of alcohol http://purl.obolibrary.org/obo/NCIT_C81229 Alcohol Use History An Alcohol Use History in which there was alcohol consumption in the past but is currently a non-drinker of alcohol. http://purl.obolibrary.org/obo/OBIB_0000509 moderate alcohol consumption history http://purl.obolibrary.org/obo/NCIT_C81229 Alcohol Use History An Alcohol Use History in which alcohol consumption was equal to or less than 2 drinks per day for men and 1 drink or less per day for women. http://purl.obolibrary.org/obo/OBIB_0000510 greater than moderate alcohol consumption history http://purl.obolibrary.org/obo/NCIT_C81229 Alcohol Use History An Alcohol Use History in which alcohol consumption was more than 2 drinks per day for men and more than 1 drink per day for women. http://purl.obolibrary.org/obo/OBIB_0000511 duration of greater than moderate alcohol consumption prior to enrollment http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of greater than moderate alcohol consumption (more than 2 drinks per day for a man or more than 1 drink per day for a woman) prior to study enrollment. http://purl.obolibrary.org/obo/OBIB_0000512 lifelong non-smoker history http://purl.obolibrary.org/obo/NCIT_C29719 Tobacco Smoking History A Smoking History in which there was no or an insignificant level of smoking. http://purl.obolibrary.org/obo/OBIB_0000513 current smoker history http://purl.obolibrary.org/obo/NCIT_C29719 Tobacco Smoking History A Smoking History in which there is current smoking either on a daily or non-daily basis. http://purl.obolibrary.org/obo/OBIB_0000514 current reformed smoker for more than 15 years history http://purl.obolibrary.org/obo/NCIT_C29719 Tobacco Smoking History A Smoking History in which there is no current smoking and has not been smoking for more than 15 years. http://purl.obolibrary.org/obo/OBIB_0000515 current reformed smoker for less than 15 years history http://purl.obolibrary.org/obo/NCIT_C29719 Tobacco Smoking History A Smoking History in which there is no current smoking and has not been smoking for less than 15 years. http://purl.obolibrary.org/obo/OBIB_0000516 timing of scoring performance status http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region A one-dimensional temporal region during which a cancer patient's performance status (general well-being and activities of daily life) was assessed. http://purl.obolibrary.org/obo/OBIB_0000517 preoperative performance status score http://purl.obolibrary.org/obo/OBIB_0000516 timing of scoring performance status A timing of scoring performance status that occurs prior to an operation to treat cancer. http://purl.obolibrary.org/obo/OBIB_0000518 pre-adjuvant performance status score http://purl.obolibrary.org/obo/OBIB_0000516 timing of scoring performance status A timing of scoring performance status that occurs prior to adjuvant therapy to treat cancer. http://purl.obolibrary.org/obo/OBIB_0000519 post adjuvant performance status score http://purl.obolibrary.org/obo/OBIB_0000516 timing of scoring performance status A timing of scoring performance status that occurs after adjuvant therapy to treat cancer. http://purl.obolibrary.org/obo/OBIB_0000520 comment from clinical data entry form http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information relevant to the filling out of a clinical data entry form. http://purl.obolibrary.org/obo/OBIB_0000521 pill-based hormonal birth control method http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method A birth control method that involves the use of an oral hormone-based contraceptive typically taken as a pill. http://purl.obolibrary.org/obo/OBIB_0000522 injection-based hormonal birth control method http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method A birth control method that involves the injection of hormones. http://purl.obolibrary.org/obo/OBIB_0000524 patch-based hormonal birth control method http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method A birth control method that involves the administration of hormones through a transdermal patch delivery system. http://purl.obolibrary.org/obo/OBIB_0000525 vaginal ring-based hormonal birth control method http://purl.obolibrary.org/obo/NCIT_C106501 Birth Control Method A birth control method that involves the administration of hormones through a vaginal ring. http://purl.obolibrary.org/obo/OBIB_0000526 duration of hormonal birth control use prior to enrollment http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of use of hormonally based birth control prior to enrollment in a study. http://purl.obolibrary.org/obo/OBIB_0000527 time since last usage of hormonal birth control http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since the participant last used hormonally based birth control. http://purl.obolibrary.org/obo/OBIB_0000528 comment on the use of hormonally based birth control http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information relevant to the use of hormonally based birth control. http://purl.obolibrary.org/obo/OBIB_0000529 duration of hormone replacement therapy prior to enrollment http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the duration of hormone replacement therapy prior to enrollment in a study. http://purl.obolibrary.org/obo/OBIB_0000530 time since last usage of hormone replacement therapy http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that is the result of measuring the time elapsed since the participant last used hormonally replacement therapy. http://purl.obolibrary.org/obo/OBIB_0000531 comment on the use of hormone replacement therapy http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information relevant to the use of hormone replacement therapy. http://purl.obolibrary.org/obo/OBIB_0000532 comment on exposure to environmental and workplace carcinogens http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information relevant to the history of exposure to environmental and workplace carcinogens. http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor http://www.ebi.ac.uk/efo/EFO_0003919 risk factor A risk factor that is associated with increased likelihood of colorectal cancer. http://purl.obolibrary.org/obo/OBIB_0000534 high meat diet colorectal cancer risk factor http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor A colorectal cancer risk factor that is having a diet that is high in red meats and processed meats. http://purl.obolibrary.org/obo/OBIB_0000535 obesity colorectal cancer risk factor http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor A colorectal cancer risk factor that is having been obese. http://purl.obolibrary.org/obo/OBIB_0000536 Type II diabetes colorectal cancer risk factor http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor A colorectal cancer risk factor that is having Type II diabetes mellitus. http://purl.obolibrary.org/obo/OBIB_0000537 previous colorectal polyps colorectal cancer risk factor http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor A colorectal cancer risk factor that is having had colorectal polyps. http://purl.obolibrary.org/obo/OBIB_0000538 familial adenomatous polyposis colorectal cancer risk factor http://purl.obolibrary.org/obo/OBIB_0000533 colorectal cancer risk factor A colorectal cancer risk factor that is having familial adenomatous polyposis or having a family member with familial adenomatous polyposis. http://purl.obolibrary.org/obo/OBIB_0000539 estrogen alone hormone replacement therapy http://www.ebi.ac.uk/efo/EFO_0003961 hormone replacement therapy A hormone replacement therapy where the hormone is estrogen. http://purl.obolibrary.org/obo/OBIB_0000540 estrogen with progestin hormone replacement therapy http://www.ebi.ac.uk/efo/EFO_0003961 hormone replacement therapy A hormone replacement therapy where the hormones are estrogen and progestin. http://purl.obolibrary.org/obo/OBIB_0000541 progestin alone hormone replacement therapy http://www.ebi.ac.uk/efo/EFO_0003961 hormone replacement therapy A hormone replacement therapy where the hormone is progestin. http://purl.obolibrary.org/obo/OBIB_0000542 testosterone hormone replacement therapy http://www.ebi.ac.uk/efo/EFO_0003961 hormone replacement therapy A hormone replacement therapy where the hormone is testosterone. http://purl.obolibrary.org/obo/OBIB_0000543 clinical history of sepsis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of sepsis. http://purl.obolibrary.org/obo/OBIB_0000544 clinical history of pneumonia http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of pneumonia. http://purl.obolibrary.org/obo/OBIB_0000545 clinical history of open wounds http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of open wounds. http://purl.obolibrary.org/obo/OBIB_0000546 clinical history of high unexplained fever http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of a high unexplained fever . http://purl.obolibrary.org/obo/OBIB_0000547 clinical history of positive blood cultures http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of positive blood cultures. http://purl.obolibrary.org/obo/OBIB_0000548 clinical history of abnormal white blood cell levels http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of abnormal white blood cell levels. http://purl.obolibrary.org/obo/OBIB_0000549 clinical history of fungal infections http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of fungal infections. http://purl.obolibrary.org/obo/OBIB_0000550 clinical history of ascites http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of the presence of ascites fluid. http://purl.obolibrary.org/obo/OBIB_0000551 clinical history of cellulitis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of cellulitis. http://purl.obolibrary.org/obo/OBIB_0000552 clinical history of blood transfusion in foreign country http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of receiving a blood transfusion while in another country. http://purl.obolibrary.org/obo/OBIB_0000553 clinical history of human tissue transplant http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of receiving a human tissue or organ transplant . http://purl.obolibrary.org/obo/OBIB_0000554 clinical history of animal tissue xenotransplant http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of receiving an animal tissue or organ xenotransplant. http://purl.obolibrary.org/obo/OBIB_0000555 clinical history of smallpox vaccination http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinic history in which there is a history of a recent of smallpox vaccination. http://purl.obolibrary.org/obo/OBIB_0000556 a clinical history of contact with someone with smallpox http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of contact with someone who recently had smallpox. http://purl.obolibrary.org/obo/OBIB_0000557 clinical history of dialysis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of significant regular dialysis treatment. http://purl.obolibrary.org/obo/OBIB_0000558 clinical history of cancer at death http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a current diagnosis of cancer at death. http://purl.obolibrary.org/obo/OBIB_0000559 clinical history of cancer within a time period before death http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of cancer diagnosis within a specified time frame. http://purl.obolibrary.org/obo/OBIB_0000560 clinical history of tuberculosis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of tuberculosis . http://purl.obolibrary.org/obo/OBIB_0000561 clinical history of meningitis at death http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there was active meningitis at death. http://purl.obolibrary.org/obo/OBIB_0000562 clinical history of encephalitis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there was active encephalitis at death. http://purl.obolibrary.org/obo/OBIB_0000563 clinical history of long term steroid use http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of long term steroid use. http://purl.obolibrary.org/obo/OBIB_0000564 clinical history of osteomyelitis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of osteomyelitis. http://purl.obolibrary.org/obo/OBIB_0000565 clinical history of unexplained seizures http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of unexplained seizures. http://purl.obolibrary.org/obo/OBIB_0000566 clinical history of unexplained weakness and fatigue http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of unexplained weakness and fatigue described as flu-like symptoms. http://purl.obolibrary.org/obo/OBIB_0000567 clinical history of exposure to toxins http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of exposure to toxic substances that may have led to chronic conditions. http://purl.obolibrary.org/obo/OBIB_0000568 clinical history of exposure to rabies http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of an animal bite in recent past, from an animal suspected to have rabies. http://purl.obolibrary.org/obo/OBIB_0000569 indication of heroin use http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether an individual ever used heroin in any manner. http://purl.obolibrary.org/obo/OBIB_0000570 Indication of recent cocaine use http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether an individual recently used cocaine. http://purl.obolibrary.org/obo/OBIB_0000571 indication of male homosexual sexual activity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in that indicates whether a man has ever had sex with another man. http://purl.obolibrary.org/obo/OBIB_0000572 an indication of illegal injectable drug use http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether an individual recently used injectable drugs for non-medical purposes in the recent past. http://purl.obolibrary.org/obo/OBIB_0000573 clinical history of clotting disorders http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of clotting disorders, such as hemophilia, requiring treatment with human-derived clotting factors. http://purl.obolibrary.org/obo/OBIB_0000574 clinical history of growth hormone use http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of growth hormone use. http://purl.obolibrary.org/obo/OBIB_0000575 clinical history of inability to have Human Immunodeficiency Virus testing due to hemodilution http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of the donor not being able to be tested for Human Immunodeficiency Virus (HIV) because of hemodilution. http://purl.obolibrary.org/obo/OBIB_0000576 clinical history of unexplained weight loss http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of unexplained weight loss. http://purl.obolibrary.org/obo/OBIB_0000577 clinical history of night sweats http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of night sweats. http://purl.obolibrary.org/obo/OBIB_0000578 clinical history of blue or purple spots on skin or mucous membranes http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a of blue or purple spots on the skin or mucus membranes (typical of Kaposi's sarcoma). http://purl.obolibrary.org/obo/OBIB_0000579 clinical history of unexplained lymphadenopathy http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of unexplained lymphadenopathy of a specific duration. http://purl.obolibrary.org/obo/OBIB_0000580 clinical history of a prolonged fever http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of fever of at least 38.6 Celsius for a specified duration. http://purl.obolibrary.org/obo/OBIB_0000581 clinical history of an unexplained cough or shortness of breath http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is are active signs of unexplained persistent cough and/or shortness of breath. http://purl.obolibrary.org/obo/OBIB_0000582 clinical history of opportunistic infections http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of opportunistic infections. http://purl.obolibrary.org/obo/OBIB_0000583 clinical history of sexually transmitted disease http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of sexually transmitted diseases http://purl.obolibrary.org/obo/OBIB_0000584 clinical history of drug abuse http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of drug abuse. http://purl.obolibrary.org/obo/OBIB_0000585 clinical history of Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of a Severe Acute Respiratory Syndrome (SARS) diagnosis. http://purl.obolibrary.org/obo/OBIB_0000586 clinical history of exposure to Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of recent contact with someone who has Severe Acute Respiratory Syndrome (SARS). http://purl.obolibrary.org/obo/OBIB_0000587 clinical history of West Nile Virus http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of West Nile Virus (WNV) infection. http://purl.obolibrary.org/obo/OBIB_0000588 clinical history of West Nile Virus exposure http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of contact with a human or animal who has West Nile Virus (WNV). http://purl.obolibrary.org/obo/OBIB_0000589 clinical history of gonorrhea http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of active gonorrhea infection or treatment for gonorrhea in the recent past. http://purl.obolibrary.org/obo/OBIB_0000590 clinical history of syphilis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of active syphilis infection or treatment for syphilis in the recent past. http://purl.obolibrary.org/obo/OBIB_0000591 clinical history of Hepatitis B http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Hepatitis B infection. http://purl.obolibrary.org/obo/OBIB_0000592 clinical history of Hepatitis C http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Hepatitis C infection. http://purl.obolibrary.org/obo/OBIB_0000593 clinical history of Human Immunodeficiency Virus http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Human Immunodeficiency Virus (HIV). http://purl.obolibrary.org/obo/OBIB_0000594 clinical history of lupus http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of systemic lupus http://purl.obolibrary.org/obo/OBIB_0000595 clinical history of sarcoidosis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of sarcoidosis. http://purl.obolibrary.org/obo/OBIB_0000596 clinical history of scleroderma http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of scleroderma. http://purl.obolibrary.org/obo/OBIB_0000597 clinical history of Reye's Syndrome http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Reye's Syndrome. http://purl.obolibrary.org/obo/OBIB_0000598 clinical history of rheumatoid arthritis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of rheumatoid arthritis. http://purl.obolibrary.org/obo/OBIB_0000599 clinical history of idiopathic heart disease http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of idiopathic heart disease. http://purl.obolibrary.org/obo/OBIB_0000600 clinical history of Alzheimer's disease http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Alzheimer's Disease. http://purl.obolibrary.org/obo/OBIB_0000601 clinical history of dementia of unknown cause http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of dementia with unknown cause that is not caused by a previous Cerebrovascular Accident (CVA) infection, head trauma or brain tumor). http://purl.obolibrary.org/obo/OBIB_0000602 clinical history of Multiple Sclerosis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Multiple Sclerosis (MS). http://purl.obolibrary.org/obo/OBIB_0000603 clinical history of Amyotrophic Lateral Sclerosis http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a history of Amyotrophic Lateral Sclerosis (ALS) http://purl.obolibrary.org/obo/OBIB_0000604 indication of having resided in a Northern European military base http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual resided on a Northern European military base for a specified duration during a specific time frame. http://purl.obolibrary.org/obo/OBIB_0000605 indication of having resided in Europe during a specific time frame http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual resided in Europe during a specific time frame http://purl.obolibrary.org/obo/OBIB_0000606 indication of performing sexual acts in exchange for money or drugs http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual ever performed sexual acts in exchange for money or drugs. http://purl.obolibrary.org/obo/OBIB_0000608 indication of a tattoo from unregulated tattoo parlor http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual had a tattoo done in a state that does not regulate tattoo parlors, in the recent past. http://purl.obolibrary.org/obo/OBIB_0000609 indication of illegal prescription drug use http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual has used prescription pills that were not prescribed to them. http://purl.obolibrary.org/obo/OBIB_0000610 indication of intravenous drug use http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual has used illegal intravenous drugs in a specified time frame. http://purl.obolibrary.org/obo/OBIB_0000611 indication of having lived in the United Kingdom during specific time frame http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual spent a total of three or more months in the United Kingdom, in a specified time frame. http://purl.obolibrary.org/obo/OBIB_0000612 indication of body piercing from non-professional http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual has signs of non-professional body piercing. http://purl.obolibrary.org/obo/OBIB_0000613 indication of tattoo from non-professional http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual has signs of non-professional tattoos. http://purl.obolibrary.org/obo/OBIB_0000614 indication of residence in state-run group home at time of death http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual was a resident of a state-run group home at time of death. http://purl.obolibrary.org/obo/OBIB_0000615 indication of having resided in Europe during specific time frame http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity in which there is an indication of whether an individual lived in Europe for at least 5 years during a specific time. http://purl.obolibrary.org/obo/CHEBI_35482 opioid analgesic http://purl.obolibrary.org/obo/OGMS_0000148 medication role A narcotic or opioid substance, synthetic or semisynthetic agent producing profound analgesia, drowsiness, and changes in mood. http://purl.obolibrary.org/obo/CHEBI_51371 muscle relaxant http://purl.obolibrary.org/obo/OGMS_0000148 medication role A drug used to produce muscle relaxation (excepting neuromuscular blocking agents). Its primary clinical and therapeutic use is the treatment of muscle spasm and immobility associated with strains, sprains, and injuries of the back and, to a lesser degree, injuries to the neck. Also used for the treatment of a variety of clinical conditions that have in common only the presence of skeletal muscle hyperactivity, for example, the muscle spasms that can occur in multiple sclerosis. http://purl.obolibrary.org/obo/CL_0000000 cell http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. http://purl.obolibrary.org/obo/CL_0000001 primary cultured cell http://purl.obolibrary.org/obo/CL_0000010 cultured cell A cultured cell that is freshly isolated from a organismal source, or derives in culture from such a cell prior to the culture being passaged. http://purl.obolibrary.org/obo/CL_0000003 native cell http://purl.obolibrary.org/obo/CL_0000000 cell A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment). http://purl.obolibrary.org/obo/CL_0000010 cultured cell http://purl.obolibrary.org/obo/CL_0000578 experimentally modified cell in vitro A cell in vitro that is or has been maintained or propagated as part of a cell culture. http://purl.obolibrary.org/obo/CL_0000232 erythrocyte http://purl.obolibrary.org/obo/CL_0000000 cell A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. http://purl.obolibrary.org/obo/CL_0000558 reticulocyte http://purl.obolibrary.org/obo/CL_0000000 cell An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds. http://purl.obolibrary.org/obo/CL_0000578 experimentally modified cell in vitro http://purl.obolibrary.org/obo/CL_0001034 cell in vitro A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure. http://purl.obolibrary.org/obo/CL_0000738 leukocyte http://purl.obolibrary.org/obo/CL_0000000 cell An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue. http://purl.obolibrary.org/obo/CL_0001034 cell in vitro http://purl.obolibrary.org/obo/CL_0000000 cell A cell that is maintained or propagated in a controlled artificial environment for use in an investigation. http://purl.obolibrary.org/obo/UBERON_0000029 lymph node http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph. http://purl.obolibrary.org/obo/UBERON_0000059 large intestine http://purl.obolibrary.org/obo/UBERON_0000064 organ part A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]. http://purl.obolibrary.org/obo/UBERON_0000945 stomach http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium. http://purl.obolibrary.org/obo/UBERON_0000955 brain http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. http://purl.obolibrary.org/obo/UBERON_0000970 eye http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity An organ that detects light. http://purl.obolibrary.org/obo/UBERON_0000990 reproductive system http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Anatomical system that has as its parts the organs concerned with reproduction. http://purl.obolibrary.org/obo/UBERON_0000995 uterus http://purl.obolibrary.org/obo/UBERON_0000064 organ part The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth. http://purl.obolibrary.org/obo/UBERON_0000996 vagina http://purl.obolibrary.org/obo/UBERON_0000064 organ part A fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. http://purl.obolibrary.org/obo/UBERON_0001134 skeletal muscle tissue http://purl.obolibrary.org/obo/UBERON_0000479 tissue Muscle tissue that consists primarily of skeletal muscle fibers. http://purl.obolibrary.org/obo/UBERON_0001159 sigmoid colon http://purl.obolibrary.org/obo/UBERON_0000064 organ part The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. http://purl.obolibrary.org/obo/UBERON_0001723 tongue http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity A muscular organ in the floor of the mouth. http://purl.obolibrary.org/obo/UBERON_0002106 spleen http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity The organ that functions to filter blood and to store red corpuscles and platelets. http://purl.obolibrary.org/obo/UBERON_0002107 liver http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]. http://purl.obolibrary.org/obo/UBERON_0002113 kidney http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity A paired organ of the urinary tract which has the production of urine as its primary function. http://purl.obolibrary.org/obo/UBERON_0002116 ileum http://purl.obolibrary.org/obo/UBERON_0000064 organ part The portion of the small intestine that extends from the jejunum to the colon. http://purl.obolibrary.org/obo/UBERON_0002358 peritoneum http://purl.obolibrary.org/obo/UBERON_0000064 organ part A serous membrane that lines the peritoneal cavity[VHOG,modified]. http://purl.obolibrary.org/obo/OBI_0002460 defined population inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that is based on fitting within the defined characteristics of a population based study design. http://purl.obolibrary.org/obo/HANCESTRO_0004 ancestry category http://purl.obolibrary.org/obo/OBI_0000181 population Population category defined using ancestry informative markers (AIMs) based on genetic/genomic data http://purl.obolibrary.org/obo/HANCESTRO_0008 Asian http://purl.obolibrary.org/obo/HANCESTRO_0004 ancestry category Includes individuals that either self-report or have been described as Asian but there was not sufficient information to allow classification as East Asian, Central Asian, South Asian or South-East Asian. http://purl.obolibrary.org/obo/HANCESTRO_0014 Hispanic or Latin American http://purl.obolibrary.org/obo/HANCESTRO_0004 ancestry category Includes individuals who either self-report or are described by authors as Hispanic, Latino, Latin American or one of the sub-populations from this region. This category includes individuals with known admixture of primarily European, African and Native American ancestries, though some may have also a degree of Asian (e.g. Peru). We also note that the levels of admixture vary depending on the country, with Caribbean countries carrying higher levels of African admixture when compared to South American countries, for example. This category also includes individuals who genetically cluster with reference populations from this region, for example 1000 Genomes and/or HapMap CLM, MXL, PEL and PUR populations http://purl.obolibrary.org/obo/CHEBI_33281 antimicrobial agent http://purl.obolibrary.org/obo/OGMS_0000148 medication role A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans. http://purl.obolibrary.org/obo/CHEBI_35717 sedative http://purl.obolibrary.org/obo/OGMS_0000148 medication role A central nervous system depressant used to induce drowsiness or sleep or to reduce psychological excitement or anxiety. http://purl.obolibrary.org/obo/CHEBI_50913 fixative http://purl.obolibrary.org/obo/BFO_0000023 role Any compound used for the purpose of preserving biological tissues from decay in such a way as to allow for the preparation of thin, stained sections for subsequent histological study. http://purl.obolibrary.org/obo/CHEBI_65265 antacid http://purl.obolibrary.org/obo/OGMS_0000148 medication role Any substance which is used to neutralise stomach acidity. http://purl.obolibrary.org/obo/UBERON_0000173 amniotic fluid http://purl.obolibrary.org/obo/UBERON_0000463 organism substance Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid. http://purl.obolibrary.org/obo/UBERON_0000341 throat http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]. http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Anatomical entity that has mass. http://purl.obolibrary.org/obo/UBERON_0000477 anatomical cluster http://purl.obolibrary.org/obo/BFO_0000040 material entity Anatomical group that has its parts adjacent to one another. http://purl.obolibrary.org/obo/UBERON_0000481 multi-tissue structure http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. http://purl.obolibrary.org/obo/UBERON_0001087 pleural fluid http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid Transudate contained in the pleural cavity. http://purl.obolibrary.org/obo/UBERON_0001088 urine http://purl.obolibrary.org/obo/UBERON_0000463 organism substance Excretion that is the output of a kidney. http://purl.obolibrary.org/obo/UBERON_0001089 sweat http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid Secretion produced by a sweat gland. http://purl.obolibrary.org/obo/UBERON_0001268 peritoneal fluid http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid Transudate contained in the peritoneal cavity. http://purl.obolibrary.org/obo/UBERON_0001567 cheek http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity A fleshy subdivision of one side of the face bounded by an eye, ear and the nose. http://purl.obolibrary.org/obo/UBERON_0001830 minor salivary gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. http://purl.obolibrary.org/obo/UBERON_0001968 semen http://purl.obolibrary.org/obo/UBERON_0000463 organism substance Organism substance that is composed of sperm cells suspended in seminal fluid. http://purl.obolibrary.org/obo/UBERON_0001970 bile http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid Vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium. http://purl.obolibrary.org/obo/UBERON_0002032 areola http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple. http://purl.obolibrary.org/obo/UBERON_0002118 right ovary http://purl.obolibrary.org/obo/UBERON_0000992 ovary An ovary that is part of a right side of organism [Automatically generated definition]. http://purl.obolibrary.org/obo/UBERON_0002119 left ovary http://purl.obolibrary.org/obo/UBERON_0000992 ovary An ovary that is part of a left side of organism [Automatically generated definition]. http://purl.obolibrary.org/obo/UBERON_0002167 right lung http://purl.obolibrary.org/obo/UBERON_0002048 lung Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]. http://purl.obolibrary.org/obo/UBERON_0002168 left lung http://purl.obolibrary.org/obo/UBERON_0002048 lung Lung which consists of the left upper lobe and left lower lobe.[FMA]. http://purl.obolibrary.org/obo/UBERON_0002409 pericardial fluid http://purl.obolibrary.org/obo/UBERON_0006314 bodily fluid Transudate contained in the pericardial cavity.[FMA]. http://purl.obolibrary.org/obo/UBERON_0003688 omentum http://purl.obolibrary.org/obo/UBERON_0000064 organ part A fold of peritoneum originating at the stomach and supporting the viscera. http://purl.obolibrary.org/obo/UBERON_0004538 left kidney http://purl.obolibrary.org/obo/UBERON_0002113 kidney A kidney that is part of a left side of organism [Automatically generated definition]. http://purl.obolibrary.org/obo/UBERON_0004539 right kidney http://purl.obolibrary.org/obo/UBERON_0002113 kidney A kidney that is part of a right side of organism [Automatically generated definition]. http://purl.obolibrary.org/obo/UBERON_0005448 greater omentum http://purl.obolibrary.org/obo/UBERON_0003688 omentum The greater omentum (also the great omentum, omentum majus, gastrocolic omentum, epiploön, or, especially in animals, caul) is a large fold of peritoneum that hangs down from the stomach, and extends from the stomach to the posterior abdominal wall after associating with the transverse colon. http://purl.obolibrary.org/obo/UBERON_0007106 chorionic villus http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta. http://purl.obolibrary.org/obo/UBERON_0007109 meconium http://purl.obolibrary.org/obo/UBERON_0001988 feces A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth. http://purl.obolibrary.org/obo/UBERON_0007311 sputum http://purl.obolibrary.org/obo/UBERON_0000463 organism substance Matter ejected from the lungs, bronchi, and trachea, through the mouth. http://purl.obolibrary.org/obo/UBERON_0007610 tibial artery http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot. http://purl.obolibrary.org/obo/UBERON_0012168 umbilical cord blood http://purl.obolibrary.org/obo/UBERON_0000178 blood Blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]. http://purl.obolibrary.org/obo/APOLLO_SV_00000033 counting http://purl.obolibrary.org/obo/OBI_0000011 planned process The planned process of finding the number of elements in a finite set of objects. http://purl.obolibrary.org/obo/GEO_000000004 subnational entity http://purl.obolibrary.org/obo/GEO_000000400 governmental organization a governmental organization that has a local, regional, or territorial government that recognizes a sovereign state as its higher political authority http://purl.obolibrary.org/obo/GEO_000000006 geopolitical dependency http://purl.obolibrary.org/obo/GEO_000000004 subnational entity A subnational entity that does not possess full political independence or sovereignty as a sovereign state, but remains politically outside of the controlling state and controls a geographical region that is outside the controlling state's integral region. http://purl.obolibrary.org/obo/GEO_000000370 geographical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is (1) a bona fide or fiat object part of the crust, any bodies of liquid on or contained within the crust, or planetary boundary layer (if present) of a terrestrial planet (including Earth), dwarf planet, exoplanet, natural satellite, planetesimal, or small Solar System body, and that (2) overlaps the planetary surface (including having a boundary that coincides with part of the planetary surface). http://purl.obolibrary.org/obo/GEO_000000372 geographical region http://purl.obolibrary.org/obo/GEO_000000370 geographical entity A geographical entity that is demarcated at least in part by one or more closed fiat boundaries all of whose lines are part of the planetary surface. http://purl.obolibrary.org/obo/GEO_000000400 governmental organization http://purl.obolibrary.org/obo/OBI_0000245 organization An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization". http://www.ebi.ac.uk/efo/EFO_0004950 date of birth http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum The point in time at which an individual was born. http://www.ebi.ac.uk/efo/EFO_0004953 date of diagnosis http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum The point at which a clinical diagnosis is made. http://purl.obolibrary.org/obo/CHEBI_50919 antiemetic http://purl.obolibrary.org/obo/OGMS_0000148 medication role A drug used to prevent nausea or vomiting. An antiemetic may act by a wide range of mechanisms: it might affect the medullary control centres (the vomiting centre and the chemoreceptive trigger zone) or affect the peripheral receptors. http://purl.obolibrary.org/obo/IAO_0020016 given name http://purl.obolibrary.org/obo/IAO_0020015 personal name A given name, in Western contexts often referred to as a first name, is a personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name http://purl.obolibrary.org/obo/IAO_0020017 family name http://purl.obolibrary.org/obo/IAO_0020015 personal name A family name (in Western contexts often referred to as a surname or last name) is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children. http://purl.obolibrary.org/obo/IAO_0020021 identity document http://purl.obolibrary.org/obo/IAO_0000310 document A document that denotes some identity and is concretized by the bearer of some credential role. http://purl.obolibrary.org/obo/IAO_0020022 documented identity http://purl.obolibrary.org/obo/IAO_0000030 information content entity A documented identity is the aggregate of all data items about an entity. Notice that a documented identity is not itself a document since a document is intended to be understood as a whole and data items about an individual are usually scattered across different documents. http://purl.obolibrary.org/obo/IAO_0020023 authentication http://purl.obolibrary.org/obo/BFO_0000015 process Authentication is the act of checking or verifying an identity claim (that is either tacit or explicit). http://purl.obolibrary.org/obo/IAO_0020024 credential role http://purl.obolibrary.org/obo/BFO_0000023 role A role that inheres in a concretization of an identity document and is realized by an authentication process. http://purl.obolibrary.org/obo/OMRSE_00000012 health care provider role http://purl.obolibrary.org/obo/OMRSE_00000010 human health care role A human health care role inhering in an organization or human being that is realized by a process of providing health care services to an organism. http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role A role inhering in an entity realized by social interactions in human society. http://purl.obolibrary.org/obo/ICO_0000146 eligibility of candidate participation http://purl.obolibrary.org/obo/BFO_0000017 realizable entity A role that represents the eligibility of a candidate according to a study protocol. http://purl.obolibrary.org/obo/GO_0006955 immune response http://purl.obolibrary.org/obo/GO_0008150 biological_process Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. http://purl.obolibrary.org/obo/GO_0008150 biological_process http://purl.obolibrary.org/obo/BFO_0000015 process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. http://purl.obolibrary.org/obo/GO_0032991 protein-containing complex http://purl.obolibrary.org/obo/BFO_0000040 material entity A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. http://purl.obolibrary.org/obo/GO_0019814 immunoglobulin complex http://purl.obolibrary.org/obo/GO_0032991 protein-containing complex A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. http://purl.obolibrary.org/obo/OBI_0002145 antigen specific antibodies assay http://purl.obolibrary.org/obo/OBI_0000443 analyte assay An analyte assay that measures the presence or amount of antibodies to a specified antigen. http://purl.obolibrary.org/obo/OMRSE_00000204 social identity information content entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is intended to be a truthful statement about some person and whether that person identifies as some particular aspect of social identity—such as a gender, an ethnicity, a race, or a sexual orientation—where the sense of identifying may correspond to either (i) an aspect of one’s cognitive representation of oneself, (ii) how one prefers to be regarded by others within some social context, or (iii) how one chooses to present oneself to others within some social context. http://purl.obolibrary.org/obo/OMRSE_00000205 ethnic identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000204 social identity information content entity A social identity information content entity that is about whether some person identifies as some ethnicity. http://purl.obolibrary.org/obo/OMRSE_00000206 OMB ethnic identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000205 ethnic identity information content entity An ethnic identity information content entity that uses OMB terminology for ethnicity or terminology that is strictly mapped onto the OMB ethnicity terms. http://purl.obolibrary.org/obo/OMRSE_00000207 OMB Hispanic or Latino identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000206 OMB ethnic identity information content entity An OMB ethnic identity information content entity that is about some person's identifying as Hispanic or Latino, which are intended to mean being of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin, regardless of race. http://purl.obolibrary.org/obo/OMRSE_00000208 OMB not Hispanic or Latino identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000206 OMB ethnic identity information content entity An OMB ethnic identity information content entity that is about some person's identifying as neither Hispanic nor Latino, which are intended to mean being of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin, regardless of race. http://purl.obolibrary.org/obo/OMRSE_00000209 gender identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000204 social identity information content entity A social identity information content entity that is about whether some person identifies as some gender. http://purl.obolibrary.org/obo/OMRSE_00000210 female gender identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000209 gender identity information content entity A gender identity information content entity that is about some person's identifying as female in gender. http://purl.obolibrary.org/obo/OMRSE_00000211 male gender identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000209 gender identity information content entity A gender identity information content entity that is about some person's identifying as male in gender. http://purl.obolibrary.org/obo/OMRSE_00000212 non-binary identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000209 gender identity information content entity A gender identity information content entity that is about some person's identifying as non-binary in gender. http://purl.obolibrary.org/obo/OMRSE_00000213 racial identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000204 social identity information content entity A social identity information content entity that is about whether some person identifies as some race. http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000213 racial identity information content entity A racial identity information content entity that uses OMB terminology and definitions for race or terminology that is strictly mapped onto the OMB race terms. http://purl.obolibrary.org/obo/OMRSE_00000215 OMB American Indian or Alaska Native identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity An OMB racial identity information content entity that is about some person's identifying as American Indian or Alaska Native, which is intended to mean having origins in any of the original peoples of North and South America (including Central America), and maintains tribal affiliation or community attachment. http://purl.obolibrary.org/obo/OMRSE_00000216 OMB Asian identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity An OMB racial identity information content entity that is about some person's identifying as Asian, which is intended to mean having origins in any of the original peoples of the Far East, Southeast Asia, or the Indian subcontinent. http://purl.obolibrary.org/obo/OMRSE_00000217 OMB black or African American identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity An OMB racial identity information content entity that is about some person's identifying as black or African American which is intended to mean having origins in any of the black racial groups of Africa. http://purl.obolibrary.org/obo/OMRSE_00000218 OMB Native Hawaiian or other Pacific Islander identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity An OMB racial identity information content entity that is about some person's identifying as Native Hawaiian or other Pacific Islander, which is intended to mean having origins in any of the original peoples of Hawaii, Guam, Samoa, or other Pacific Islands. http://purl.obolibrary.org/obo/OMRSE_00000219 OMB white identity information content entity http://purl.obolibrary.org/obo/OMRSE_00000214 OMB racial identity information content entity An OMB racial identity information content entity that is about some person's identifying as white which is intended to mean having origins in any of the original peoples of Europe, the Middle East, or North Africa. http://purl.obolibrary.org/obo/PR_000009054 insulin gene translation product http://purl.obolibrary.org/obo/PR_000000001 protein An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof. http://purl.obolibrary.org/obo/UBERON_0036214 rectosigmoid junction http://purl.obolibrary.org/obo/UBERON_0000064 organ part An anatomical junction that is between the sigmoid colon and rectum. http://purl.obolibrary.org/obo/OBI_0002650 biopsy http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive. http://purl.obolibrary.org/obo/OBI_0002653 ultrasound-guided needle biopsy http://purl.obolibrary.org/obo/OBI_0002651 image guided biopsy A needle biopsy guided by ultrasound visualization. http://purl.obolibrary.org/obo/OBI_0002654 needle biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy A biopsy that uses a hollow needle to extract cells. http://purl.obolibrary.org/obo/OBI_0002662 bone marrow biopsy http://purl.obolibrary.org/obo/OBI_0002650 biopsy A biopsy where a small amount of bone and a small amount of fluid and bone marrow are collected. http://purl.obolibrary.org/obo/OBI_0002679 vacuum-assisted biopsy needle http://purl.obolibrary.org/obo/OBI_0000436 needle A core biopsy needle integrated with a vacuum system which facilitates the collection of specimen material. http://purl.obolibrary.org/obo/OBI_0002746 induced sputum specimen http://purl.obolibrary.org/obo/OBI_0002508 sputum specimen A sputum specimen that is collected from an organism following its inhalation of a nebulized salt solution. http://purl.obolibrary.org/obo/OBI_0002774 platelet-poor plasma specimen http://purl.obolibrary.org/obo/OBI_0100016 blood plasma specimen A blood plasma specimen that is the output of some platelet-poor plasma preparation and is the portion of plasma that contains fewer than 10,000 platelets per microliter. http://purl.obolibrary.org/obo/OBI_0002775 platelet-poor plasma preparation process http://purl.obolibrary.org/obo/OBI_0600014 material component separation A material component separation process in which (1) whole blood is first centrifuged to separate red blood cells from blood plasma, which forms the supernatant, and (2) the blood plasma is then centrifuged to separate platelets from the plasm. http://purl.obolibrary.org/obo/OBI_2000000 uterine cervix specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some uterine cervix http://purl.obolibrary.org/obo/OBI_2000001 urethra specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some urethra http://purl.obolibrary.org/obo/OBI_2000002 cervical mucus specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from some cervical mucus http://purl.obolibrary.org/obo/OBI_2000003 throat specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some throat http://purl.obolibrary.org/obo/OBI_2000004 eye specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some eye http://purl.obolibrary.org/obo/OBI_2000005 respiratory system specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some respiratory system http://purl.obolibrary.org/obo/OBI_2000006 upper respiratory tract specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some upper respiratory tract http://purl.obolibrary.org/obo/OBI_2000007 nasopharynx specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some nasopharynx http://purl.obolibrary.org/obo/OBI_2000008 semen specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some semen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some bodily fluid http://purl.obolibrary.org/obo/OBI_2000010 chorionic villus specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from some chorionic villus http://purl.obolibrary.org/obo/OBI_2000011 meconium specimen http://purl.obolibrary.org/obo/OBI_0002503 feces specimen A specimen that is derived from some meconium http://purl.obolibrary.org/obo/OBI_2000012 umbilical cord blood specimen http://purl.obolibrary.org/obo/OBI_2000013 arterial blood specimen A specimen that is derived from some umbilical cord blood http://purl.obolibrary.org/obo/OBI_2000013 arterial blood specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from some arterial blood http://purl.obolibrary.org/obo/OBI_2000014 venous blood specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from some venous blood http://purl.obolibrary.org/obo/OBI_2000015 capillary blood specimen http://purl.obolibrary.org/obo/OBI_2000009 bodily fluid specimen A specimen that is derived from some capillary blood http://purl.obolibrary.org/obo/OBI_2000016 erythrocyte specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is derived from some erythrocytes http://purl.obolibrary.org/obo/OBI_2000017 reticulocyte specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is derived from some reticulocytes http://purl.obolibrary.org/obo/OBI_2000018 leukocyte specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is derived from some leukocytes http://purl.obolibrary.org/obo/IDO_0000456 immunosuppressed organism http://purl.obolibrary.org/obo/OBI_0100026 organism An organism that is experiencing pregnancy-induced or pathologic immunosuppression. http://purl.obolibrary.org/obo/IDO_0000528 pathogen http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity with a pathogenic disposition. http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression http://purl.obolibrary.org/obo/BFO_0000015 process A process that attenuates an immune response. http://purl.obolibrary.org/obo/IDO_0000612 pathologic immunosuppression http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression An immunosuppression process which arises as the result of a disorder. http://purl.obolibrary.org/obo/IDO_0000619 immunosuppressive disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition whose realization negatively regulates an immune response. http://purl.obolibrary.org/obo/IDO_0000644 pregnancy-induced immunosuppression http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression An immunosuppression induced by progesterone and other factors upregulated in pregnant women. http://purl.obolibrary.org/obo/OGMS_0000045 disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. http://vivoweb.org/ontology/core#Laboratory Laboratory http://purl.obolibrary.org/obo/OBI_0000245 organization An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis http://purl.obolibrary.org/obo/IAO_0000027 data item The representation of a conclusion of a diagnostic process. http://purl.obolibrary.org/obo/FMA_50707 Anatomical location http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity Spatial association relationship which describes the containment, adjacency and anatomical coordinates of physical anatomical entities. Examples: anatomical containment, anatomical adjacency, anatomical coordinate. http://www.ebi.ac.uk/efo/EFO_0003919 risk factor http://purl.obolibrary.org/obo/BFO_0000016 disposition An aspect of personal behavior or lifestyle, environmental exposure, or inborn or inherited characteristic, which, on the basis of epidemiologic evidence, is known to be associated with a health-related condition considered important to prevent. http://www.ebi.ac.uk/efo/EFO_0003961 hormone replacement therapy http://purl.obolibrary.org/obo/OGMS_0000090 treatment Therapeutic use of hormones to alleviate the effects of hormone deficiency. http://purl.obolibrary.org/obo/OBI_0002444 measurand role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role A role borne by a material entity and realized in an assay which achieves the objective to measure the magnitude/concentration/amount of the measurand in the entity bearing evaluant role. http://purl.obolibrary.org/obo/OBI_0002453 health status inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more clinically significant bodily components, dispositions, and/or bodily processes of an entity that are inferred from relevant clinical findings or self-reported, which, if met, makes the entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002454 clinically relevant lifestyle inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more clinically relevant planned processes that a human being actively participates in , which, if met, makes the human being suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002455 clinically relevant exposure inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more clinically relevant histories of exposure of an entity, which, if met, makes the entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002456 gravidity inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states one or more gravidity statuses of an organism, which, if met, makes the entity suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBIB_0000069 prosector role http://purl.obolibrary.org/obo/BFO_0000023 role A role which inheres in a person and is realized in the dissection of a body for anatomical instruction or pathological examination. http://purl.obolibrary.org/obo/IAO_8000001 base ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies. http://purl.obolibrary.org/obo/IAO_8000003 main release ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is intended to be the primary release product and the one consumed by the majority of tools. http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module. http://purl.obolibrary.org/obo/IAO_8000007 curation subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation. http://purl.obolibrary.org/obo/IAO_8000008 analysis subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module An ontology module that is intended for usage in analysis or discovery applications. http://purl.obolibrary.org/obo/IAO_8000013 reasoned ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available. http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV. http://purl.obolibrary.org/obo/IAO_8000015 template generated ontology module http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module An ontology module that is automatically generated from a template specification and fillers for slots in that template. http://purl.obolibrary.org/obo/IAO_8000018 obo basic subset ontology module http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports http://purl.obolibrary.org/obo/OBIB_0000616 biobank http://purl.obolibrary.org/obo/BFO_0000027 object aggregate A biobank is a collections of samples of biological substances (e.g. tissue, blood, DNA) which are linked to data about the samples and their donors. They have a dual nature as collections of samples and data. http://purl.obolibrary.org/obo/OBIB_0000617 human biobank http://purl.obolibrary.org/obo/OBIB_0000616 biobank A human biobank is a collections of samples of human body substances (e.g. Tissue, blood, DNA) which are linked to personal data and socio deographic information about the donors of the material. They have a dual nature as collections of samples and data." http://purl.obolibrary.org/obo/OBIB_0000620 ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that consists of two letters, is part of the ISO 3166-1, and designates countries, dependent territories, and special areas of geographical interest. http://purl.obolibrary.org/obo/OBIB_0000624 contacting http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that involves a human being and is intended to initiate a communication with another human being. http://purl.obolibrary.org/obo/OBIB_0000625 contact role http://purl.obolibrary.org/obo/OMRSE_00002072 role in human social processes A role borne by a human being that is part of an group of individuals and acts as contact person for the group. This role gets realized by the bearer being a participant in a contacting process. http://purl.obolibrary.org/obo/OBIB_0000626 biobank contact person http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens A human being that is member of a biobank organization and bears the organization contact role. http://purl.obolibrary.org/obo/OBIB_0000629 postal address of biobank contact person http://purl.obolibrary.org/obo/IAO_0000422 postal address Postal address used as a directive for deliveries to the biobank contact person. http://purl.obolibrary.org/obo/OBIB_0000630 department http://purl.obolibrary.org/obo/OBI_0000245 organization An organization with a specific responsibility that is a part of a larger organization with a specific responsibility. http://purl.obolibrary.org/obo/OBIB_0000634 telephone number http://purl.obolibrary.org/obo/IAO_0000300 textual entity A telephone number is a textual entity consisting of a sequence of digits used to call from one telephone line to another in a public switched telephone network. http://purl.obolibrary.org/obo/OBIB_0000636 post-office box number http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier denoting a post-office box. http://purl.obolibrary.org/obo/OBIB_0000637 post-office box http://purl.obolibrary.org/obo/BFO_0000040 material entity A post-office box is material entity that is a box on the premises of a post office station and is uniquely addressable. http://purl.obolibrary.org/obo/OBIB_0000640 ISO 3166-1 alpha-2 code for biobank contact person http://purl.obolibrary.org/obo/OBIB_0000620 ISO 3166-1 alpha-2 code The ISO 3166-1 alpha-2 code that is part of the biobank contact person's postal address. http://purl.obolibrary.org/obo/OBIB_0000641 settlement part of address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is part of a postal address and denotes a human settlement for the purpose of delivering mail. http://purl.obolibrary.org/obo/OBIB_0000643 intra-settlement specification part of address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is part of a postal address and specifies the location inside the settlement (which is specified by another part of the address). This can be a street name and a house number, or just a number or a post-office box number. http://purl.obolibrary.org/obo/OBIB_0000646 name of hosted study collection http://purl.obolibrary.org/obo/OBIB_0000001 sample collection identifier The proper name that designates a hosted study collection. http://purl.obolibrary.org/obo/OBIB_0000653 street http://purl.obolibrary.org/obo/BFO_0000040 material entity A street is a thoroughfare in a built environment. http://purl.obolibrary.org/obo/OBIB_0000657 CTEP organization identifier http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier for an organization that is assigned to that organization by the Cancer Therapy Evaluation Program. http://purl.obolibrary.org/obo/OBIB_0000658 biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifier http://purl.obolibrary.org/obo/OBIB_0000621 biobank idenfier with ISO 3166-1 alpha-2 code A biobank identifier that has both an ISO 3166-1 alpha-2 code and a CTEP organization code. http://purl.obolibrary.org/obo/OBIB_0000659 fixed tissue specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A processed specimen that is the output of a fixation process. http://purl.obolibrary.org/obo/OBIB_0000660 fixed tissue block specimen http://purl.obolibrary.org/obo/OBIB_0000659 fixed tissue specimen A fixed tissue specimen that is in block form. http://purl.obolibrary.org/obo/OBIB_0000661 fixed tissue slide specimen http://purl.obolibrary.org/obo/OBIB_0000659 fixed tissue specimen A fixed tissue specimen that is placed in a slide. http://purl.obolibrary.org/obo/OBIB_0000662 flash frozen specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen that has been instantly/quickly frozen by subjecting the specimen to cryogenic temperatures, or in direct contact with liquid nitrogen at -320.8F 0r -196C. http://purl.obolibrary.org/obo/OBIB_0000663 fresh tissue specimen http://purl.obolibrary.org/obo/OBI_0000971 fresh specimen A fresh specimen that is in a tissue form. http://purl.obolibrary.org/obo/OBIB_0000664 frozen tissue block specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen is a tissue sample preserved in a block. http://purl.obolibrary.org/obo/OBIB_0000665 frozen tissue slide specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen that has been sliced from a tissue block into thin layers that are placed on a glass to be examined under a microscope. http://purl.obolibrary.org/obo/OBIB_0000666 microdissected specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been procured from a histology slide under direct microscopic visualization. http://purl.obolibrary.org/obo/OBIB_0000667 survey data http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that contains the outcome of a survey. http://purl.obolibrary.org/obo/OBIB_0000668 sampling specimens for biobank http://purl.obolibrary.org/obo/OBI_0000011 planned process The process of collecting or selecting an aggregate of specimens into a biobank. http://purl.obolibrary.org/obo/OBIB_0000669 biobank contact role http://purl.obolibrary.org/obo/OBIB_0000625 contact role A contact role borne by a member of a biobank organization and realized by serving as the contact for one of its biobanks. http://purl.obolibrary.org/obo/OBIB_0000670 sample collection or study contact role http://purl.obolibrary.org/obo/OBIB_0000625 contact role A contact role borne by a member of a sample collection or study organization and realized by serving as the contact for the collection or the study. http://purl.obolibrary.org/obo/OBIB_0000671 sample collection or study contact person http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens A human being acting as bearing the contact role for a sample collection or a study. http://purl.obolibrary.org/obo/OBIB_0000672 specimen disease state datum http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the pathological assessment of a specimen. http://purl.obolibrary.org/obo/OBIB_0000673 diseased state specimen datum http://purl.obolibrary.org/obo/OBIB_0000672 specimen disease state datum A specimen disease state datum item that specifies that the specimen in question consists of a disorder. http://purl.obolibrary.org/obo/OBIB_0000674 mixed state specimen datum http://purl.obolibrary.org/obo/OBIB_0000672 specimen disease state datum A specimen disease state datum that specifies that the specimen in question consists of partially normal tissue and a disorder. http://purl.obolibrary.org/obo/OBIB_0000675 normal state specimen datum http://purl.obolibrary.org/obo/OBIB_0000672 specimen disease state datum A specimen disease state datum that specifies that the specimenin questions consists of normal tissue. http://purl.obolibrary.org/obo/OBIB_0000676 fixation http://purl.obolibrary.org/obo/OBI_0000094 material processing A material processing that uses chemical process by which biological tissues are preserved from decay. Fixation terminates any ongoing biochemical reactions and may increase stability of the treated tissues. http://purl.obolibrary.org/obo/OBIB_0000677 age interval information http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about a data set that has age information and specifies the range of age information in that data set. http://purl.obolibrary.org/obo/OBIB_0000678 average age http://purl.obolibrary.org/obo/OBI_0000679 average value An average value of age for a certain group of individuals. http://purl.obolibrary.org/obo/OBIB_0000680 date of data entry http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when data about the sample collection was reported into a database. http://purl.obolibrary.org/obo/OBIB_0000681 date of data update http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when data about the sample collection was last updated in a database. http://purl.obolibrary.org/obo/OBIB_0000682 end date of sampling for biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when the sampling of specimens for a biobank ended. http://purl.obolibrary.org/obo/OBIB_0000683 start date of sampling for biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when the sampling of specimens for a biobank started. http://purl.obolibrary.org/obo/OBIB_0000686 count of current sampled human study participant http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count that is about the aggregate of individuals who have contributed biological specimens in a study. http://purl.obolibrary.org/obo/OBIB_0000687 count of current total human study participant http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count that is about the aggregate of individuals who have been recruited to participate in a study. http://purl.obolibrary.org/obo/OBIB_0000688 physiological measurement data http://purl.obolibrary.org/obo/IAO_0000027 data item A measurement datum that contains the assessment information about the functioning of a major organ system, the extent of disease or disability,as well as the provision and/or response to therapeutic interventions. http://purl.obolibrary.org/obo/OBIB_0000689 storage temperature setting http://purl.obolibrary.org/obo/IAO_0000140 setting datum A setting datum that specifies the temperature inside a container participating in a storage process. http://purl.obolibrary.org/obo/OBIB_0000690 omics experiment on specimen http://purl.obolibrary.org/obo/OBI_0000471 study design execution An objective specification that aims at the collective characterization and quantification of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. http://purl.obolibrary.org/obo/OBIB_0000691 number of sampled human study participants objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the number of individuals to participate in a study and provide biological specimens to the study. http://purl.obolibrary.org/obo/OBIB_0000692 number of total human study participant objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the total number of individuals who are planned to participate in study. http://purl.obolibrary.org/obo/OBIB_0000693 case control study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that compares two groups of subjects; those with the disease or condtion under study and a similar group of subjects who do not have the condition. http://purl.obolibrary.org/obo/OBIB_0000694 cross sectional study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which all participants or a representative subset of participants are examined at only a single time for characteristics of a interest (e.g. a specific disease). http://purl.obolibrary.org/obo/OBIB_0000695 longitudinal study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that involves repeated observations of the same entity over time. In the biobank context, longitudinal studies sample a group of people in a given time period, and study them at intervals by the acquisition and analyses of data and/or samples over time. http://purl.obolibrary.org/obo/OBIB_0000696 cohort study design http://purl.obolibrary.org/obo/OBIB_0000695 longitudinal study design A longitudinal study that aims to study a case-defined population who presently have a certain condition or recepient of a particular treatment that are followed over time and are compared with a similar group who do not have condition. http://purl.obolibrary.org/obo/OBIB_0000697 panel study design http://purl.obolibrary.org/obo/OBIB_0000695 longitudinal study design A longitudinal study that samples a cross-section and studies it at regular intervals. http://purl.obolibrary.org/obo/OBIB_0000698 population based study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that is multidisciplinary done at the population level or among the population groups, generally to find the cause, incidence or spread of the disease or to see the response to the treatment, nutrition or environment. http://purl.obolibrary.org/obo/OBIB_0000699 quality control study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design where some aspect of the experiment is quality controlled for the purposes of quality assurance. http://purl.obolibrary.org/obo/OBIB_0000700 twin study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design usually in behavior genetics which aids the study of individual differences between genetically identical twins by highlighting the role of environmental and genetic causes on behavior. http://purl.obolibrary.org/obo/OBIB_0000701 survey plan specification http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification that is realized by process of gathering information (e.g. by asking questions). http://purl.obolibrary.org/obo/OBIB_0000702 medical record http://purl.obolibrary.org/obo/IAO_0000310 document A document that contains information representing health-relevant qualities of a patient written in a chronological manner and that is primarily used for patient care in a clinical setting. http://purl.obolibrary.org/obo/OBIB_0000703 sample medical record http://purl.obolibrary.org/obo/OBIB_0000702 medical record A medical record of a specimen donor. http://purl.obolibrary.org/obo/OBIB_0000704 sample handling summary http://purl.obolibrary.org/obo/IAO_0000310 document A document that outlines the procedures employed to preserve and protect the material collected during specimen collection as an indication of sample quality. http://purl.obolibrary.org/obo/OBIB_0000706 donor patient registry data http://purl.obolibrary.org/obo/OBIB_0000679 patient registry data Registry data for a patient who participates as a donor in a study. http://purl.obolibrary.org/obo/OBIB_0000707 study subject survey data http://purl.obolibrary.org/obo/OBIB_0000667 survey data A survey data for a specimen donor. http://purl.obolibrary.org/obo/OBIB_0000708 sample collection data entry http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that involves the initial entering of data about sample collection into a database. http://purl.obolibrary.org/obo/OBIB_0000709 sample collection data update http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process which involves editing of specimen collection data into a database after its initial entry. http://purl.obolibrary.org/obo/OBIB_0000710 survey execution http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that realizes the concretization of a survey to generate an output(survey data.) http://purl.obolibrary.org/obo/OBIB_0000711 temperature regulating http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that aims to control or maintain the temperature of a material entity to a given or required measurement datum. http://purl.obolibrary.org/obo/OBIB_0000712 comment from tissue procurement http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that states additional information about the specimen or donor that is deemed relevant for the specimen collection process. http://purl.obolibrary.org/obo/OBIB_0000713 specimen measurement http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum that is the result of measurement of the three dimensions of a specimen. http://purl.obolibrary.org/obo/OBIB_0000717 specimen preparation contact http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who prepared the specimen. http://purl.obolibrary.org/obo/OBIB_0000718 time in formalin measurement http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that states the duration during which a specimen was submerged in formalin. http://purl.obolibrary.org/obo/OBIB_0000719 specimen surgical removal http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism A collecting specimen from organism process that involves removing the specimen from an individual through a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000720 specimen freezing http://purl.obolibrary.org/obo/OBI_0000915 freezing storage A freezing storage for the specimen. http://purl.obolibrary.org/obo/OBIB_0000722 case ID http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that refers to a specimen donor who is participating in specimen collection process for tissue procurement purposes and is usually assigned at the time of donor procurement. http://purl.obolibrary.org/obo/OBIB_0000723 specimen measurement specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An directive information entity that states the technical standard measurement set and values that determines if a specimen qualifies for procurement or not. http://purl.obolibrary.org/obo/OBIB_0000724 time of specimen freezing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time when a specimen was frozen. http://purl.obolibrary.org/obo/OBIB_0000725 time of surgical removal of specimen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time when a specimen was collected by a surgical procedure. http://purl.obolibrary.org/obo/OBIB_0000726 normal specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that is normal. http://purl.obolibrary.org/obo/OBIB_0000727 hosting biobank http://purl.obolibrary.org/obo/OBIB_0000616 biobank A biobank that collects and stores specimen during specimen collection primarily for the purposes of some study. http://purl.obolibrary.org/obo/OBIB_0000730 start of sampling specimens for biobank http://purl.obolibrary.org/obo/BFO_0000035 process boundary The process boundary marking the beginning of a sampling of specimens into a biobank. http://purl.obolibrary.org/obo/OBIB_0000731 end of sampling specimens for biobank http://purl.obolibrary.org/obo/BFO_0000035 process boundary The process boundary marking the end of a sampling of specimens into a biobank. http://purl.obolibrary.org/obo/OBIB_0002001 specimen integrity http://purl.obolibrary.org/obo/PATO_0001442 wholeness A wholeness that inheres in a specimen. http://purl.obolibrary.org/obo/OBIB_0002002 specimen weight http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum A mass measurement datum that is the result of an assay to measure the weight of a specimen. http://purl.obolibrary.org/obo/OBIB_0002003 specimen slide ID http://purl.obolibrary.org/obo/IAO_0020000 identifier An identifier that specifically identifies a particular specimen slide. http://purl.obolibrary.org/obo/OBIB_0002004 surgical cancer treatment http://purl.obolibrary.org/obo/NCIT_C16212 Cancer Therapeutic Procedure A cancer therapeutic procedure that involves a surgical procedure as a main part. http://purl.obolibrary.org/obo/OBIB_0002005 specimen gross appearance of metastatic tumor http://purl.obolibrary.org/obo/OBIB_0000209 specimen gross appearance of tumor A specimen gross appearance of a tumor that has spread from its original site by discontinuous (not direct) spread, e.g. by blood or lymphatics. http://purl.obolibrary.org/obo/OBIB_0002006 specimen gross appearance of tumor center http://purl.obolibrary.org/obo/OBIB_0000209 specimen gross appearance of tumor A specimen gross appearance of the most internal topographic location of the tumor. http://purl.obolibrary.org/obo/OBIB_0002007 specimen gross appearance of tumor edge http://purl.obolibrary.org/obo/OBIB_0000209 specimen gross appearance of tumor A specimen gross appearance of the border of the tumor with non-tumorous tissue. http://purl.obolibrary.org/obo/OBIB_0002008 research authorization for post mortem specimen donation for a specific tissue or fluid http://purl.obolibrary.org/obo/OBIB_0000459 research authorization documentation for post mortem specimen donation A research authorization documentation for postmortem specimen donation in which the authorization is for a specified tissue or biological fluid. http://purl.obolibrary.org/obo/OBIB_0002013 tissue specimen suitability for molecular analysis http://purl.obolibrary.org/obo/IAO_0000144 conclusion textual entity A conclusion textual entity that signifies whether a specimen is acceptable for molecular analysis based on the assessment by a pathologist of a tissue specimen based on qualities such as purity and size. http://purl.obolibrary.org/obo/OGMS_0000148 medication role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by some material entity which can be delivered/administrated into some organism and the role is realized during a clinical treatment process aiming to treat symptoms, signs or diagnosed disease. http://purl.obolibrary.org/obo/OBI_0002554 vagina specimen http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism A specimen that is derived from vagina. http://purl.obolibrary.org/obo/OBI_0002191 courier tracking number http://purl.obolibrary.org/obo/IAO_0000577 centrally registered identifier symbol A centrally registered identifier symbol assigned by a courier organization in order to track the delivery of an item. http://purl.obolibrary.org/obo/OBI_0002192 Leica Peloris rapid tissue processor http://purl.obolibrary.org/obo/OBI_0001064 automatic tissue processor An automatic tissue processor that is a dual retort tissue processor manufactured by the Leica company to provide fast, high quality tissue processing for histology laboratories. http://purl.obolibrary.org/obo/OBI_0002194 Microm Ergostar HM200 http://purl.obolibrary.org/obo/OBI_0400168 microtome A microtome that is manufactured by Microm and uses a vertical cutting stroke common to all rotary microtomes engaged by a horizontal sliding movement. An operating arm replaces the handwheel and is attached to both sides of the instrument for greater convenience to permit control of sectioning from the left or right. http://purl.obolibrary.org/obo/OBI_0002195 microtome blade http://purl.obolibrary.org/obo/OBI_0000968 device A device that is the part of a microtome used to slice specimens to a desired thickness. http://purl.obolibrary.org/obo/OBI_0002196 Sakura Low profile Accu-Edge microtome blade http://purl.obolibrary.org/obo/OBI_0002195 microtome blade A microtome blade that is manufactured by Feather and is disposable. The ultra-sharp blades section specimens without striations, distortion or chattering. http://purl.obolibrary.org/obo/OBI_0002197 tissue section thickness http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum A length measurement datum that is the result of an assay measuring the thickness of a tissue section. http://purl.obolibrary.org/obo/OBI_0002199 reason for lack of data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that provides an explanation why a data item is not provided. http://purl.obolibrary.org/obo/OBI_0002201 determination if assay will provide reliable results http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that is used to assess whether an assay will provide reliable results based on the conditions or qualities of the inputs, devices, and other participants of the assay. http://purl.obolibrary.org/obo/OBI_0002202 GX http://purl.obolibrary.org/obo/OBI_0002200 cannot be assessed determination A cannot be assessed determination for histologic tumor grade. http://purl.obolibrary.org/obo/OBI_0002203 pTX http://purl.obolibrary.org/obo/OBI_0002200 cannot be assessed determination A cannot be assessed determination for pathologic primary tumor staging. http://purl.obolibrary.org/obo/OBI_0002204 pNX http://purl.obolibrary.org/obo/OBI_0002200 cannot be assessed determination A cannot be assessed determination of pathologic staging of lymph nodes. http://purl.obolibrary.org/obo/OBI_0002205 histologic grade according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system. http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is a histologic grade assigned to a ovarian tumor. http://purl.obolibrary.org/obo/OBI_0002216 histologic grade for ovarian tumor according to a two-tier grading system http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors. http://purl.obolibrary.org/obo/OBI_0002219 histologic grade for ovarian tumor according to the World Health Organization http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO). http://purl.obolibrary.org/obo/OBI_0002368 clinical history of cancer http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is a diagnosis of cancer. http://purl.obolibrary.org/obo/OBI_0002370 unknown clinical history of cancer http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which it is not known whether there was a diagnosis of cancer. http://purl.obolibrary.org/obo/OBI_0002373 aunt clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in the female sibling of a parent. http://purl.obolibrary.org/obo/OBI_0002374 brother clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a male sibling. http://purl.obolibrary.org/obo/OBI_0002375 daughter clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a person's female child. http://purl.obolibrary.org/obo/OBI_0002376 father clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a male parent. http://purl.obolibrary.org/obo/OBI_0002377 mother clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a female parent. http://purl.obolibrary.org/obo/OBI_0002378 sister clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a female sibling. http://purl.obolibrary.org/obo/OBI_0002379 son clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a person's male child. http://purl.obolibrary.org/obo/OBI_0002380 uncle clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a male sibling of a parent. http://purl.obolibrary.org/obo/OBI_0002381 grandmother clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a female parent of a parent. http://purl.obolibrary.org/obo/OBI_0002382 grandfather clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a male parent of a parent. http://purl.obolibrary.org/obo/OBI_0002383 nephew clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a male child of a sibling. http://purl.obolibrary.org/obo/OBI_0002384 niece clinical history of cancer http://purl.obolibrary.org/obo/OBI_0002372 family clinical history of cancer A clinical history in which there is a diagnosis of cancer in a female child of a sibling. http://purl.obolibrary.org/obo/OBI_0002385 diagnosis of infectious disease http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis A diagnosis that is an assertion that a patient who is the subject of a diagnostic process has an infectious disease. http://purl.obolibrary.org/obo/OBI_0002386 diagnosis of hepatitis B http://purl.obolibrary.org/obo/OBI_0002385 diagnosis of infectious disease A diagnosis of infectious disease caused by the hepatitis B virus. http://purl.obolibrary.org/obo/OBI_0002387 diagnosis of hepatitis C http://purl.obolibrary.org/obo/OBI_0002385 diagnosis of infectious disease A diagnosis of infectious disease caused by the hepatitis C virus. http://purl.obolibrary.org/obo/OBI_0002388 diagnosis of HIV http://purl.obolibrary.org/obo/OBI_0002385 diagnosis of infectious disease A diagnosis of infectious disease caused by the human immunodeficiency virus (1 or 2). http://purl.obolibrary.org/obo/OBI_0002389 clinical history of repeated HIV assays http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there is repeated reactive screening assays for human immunodeficiency virus (1 or 2) antibodies regardless of the results of supplemental assays. http://purl.obolibrary.org/obo/OBI_0002390 exposure to second hand smoke http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which there has been second hand exposure to tobacco smoking. http://purl.obolibrary.org/obo/OBI_0002391 exposure to second hand smoke in household during childhood http://purl.obolibrary.org/obo/OBI_0002390 exposure to second hand smoke An exposure to second hand smoke that occurred in the (patient's) household when the person was a child. http://purl.obolibrary.org/obo/OBI_0002392 exposure to second hand smoke in current household http://purl.obolibrary.org/obo/OBI_0002390 exposure to second hand smoke An exposure to second hand smoke in person's current household. http://purl.obolibrary.org/obo/OBI_0002393 pregnancy history http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which a female has had a pregnancy. http://purl.obolibrary.org/obo/OBI_0002394 number of pregnancies http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the total number of pregnancies a woman has had. http://purl.obolibrary.org/obo/OBI_0002395 number of live births http://purl.obolibrary.org/obo/IAO_0000109 measurement datum A measurement datum of the total number of live births a female has had. http://purl.obolibrary.org/obo/OBI_0002396 age when gave birth to first child http://purl.obolibrary.org/obo/OBI_0001167 age measurement datum An age measurement datum performed on a female when her first biological child was born. http://purl.obolibrary.org/obo/OBI_0002397 gynecologic surgery history http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which a woman has had gynecologic surgery in the past. http://purl.obolibrary.org/obo/OBI_0002398 hysterectomy history http://purl.obolibrary.org/obo/OBI_0002397 gynecologic surgery history A gynecologic surgery history in which a woman has had a hysterectomy. http://purl.obolibrary.org/obo/OBI_0002399 unilateral oophorectomy history http://purl.obolibrary.org/obo/OBI_0002397 gynecologic surgery history A gynecologic surgery history in which a woman has had a unilateral oophorectomy. http://purl.obolibrary.org/obo/OBI_0002400 neither hysterectomy nor oophorectomy history http://purl.obolibrary.org/obo/OBI_0002397 gynecologic surgery history A gynecologic surgery history in which a woman has not had either a hysterectomy or an oophorectomy. http://purl.obolibrary.org/obo/OBI_0002401 hormonal birth control use history http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates whether a woman has ever used oral contraceptives in order to block ovulation and prevent the occurrence of pregnancy. http://purl.obolibrary.org/obo/OBI_0002402 hormonal birth control former use history http://purl.obolibrary.org/obo/OBI_0002401 hormonal birth control use history A hormonal birth control use history that indicates an individual has previously been a hormonal birth control user but is not a current user. http://purl.obolibrary.org/obo/OBI_0002403 hormonal birth control current use history http://purl.obolibrary.org/obo/OBI_0002401 hormonal birth control use history A hormonal birth control use history that indicates an individual is currently a hormonal birth control user. http://purl.obolibrary.org/obo/OBI_0002404 no hormonal birth control use history http://purl.obolibrary.org/obo/OBI_0002401 hormonal birth control use history A hormonal birth control use history that indicates an individual has not ever been a hormonal birth control user. http://purl.obolibrary.org/obo/OBI_0002405 hormonal replacement therapy history http://purl.obolibrary.org/obo/OGMS_0000015 clinical history A clinical history in which an individual has had hormonal replacement therapy in the past. http://purl.obolibrary.org/obo/OBI_0002407 pill delivery form for hormonal replacement therapy http://purl.obolibrary.org/obo/OBI_0002406 delivery form for hormonal replacement therapy A delivery form for hormonal replacement therapy that is a pill for oral administration. http://purl.obolibrary.org/obo/OBI_0002408 patch delivery form for hormonal replacement therapy http://purl.obolibrary.org/obo/OBI_0002406 delivery form for hormonal replacement therapy A delivery form for hormonal replacement therapy that is a patch for transdermal administration. http://purl.obolibrary.org/obo/OBI_0002409 cream delivery form for hormonal replacement therapy http://purl.obolibrary.org/obo/OBI_0002406 delivery form for hormonal replacement therapy A delivery form for hormonal replacement therapy that is a cream for transdermal administration. http://purl.obolibrary.org/obo/OBI_0002410 menopausal status http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates the state of a female's cessation of menstruation. http://purl.obolibrary.org/obo/OBI_0002411 indeterminate menopausal status http://purl.obolibrary.org/obo/OBI_0002410 menopausal status A menopausal status that is neither pre- nor post-menopausal. http://purl.obolibrary.org/obo/OBI_0002412 premenopausal status http://purl.obolibrary.org/obo/OBI_0002410 menopausal status A menopausal status indicating that less than 6 months has passed since the last menstrual period and there has not been prior bilateral oophorectomy and not on estrogen replacement. http://purl.obolibrary.org/obo/OBI_0002413 perimenopausal status http://purl.obolibrary.org/obo/OBI_0002410 menopausal status A menopausal status indicating that it has been 6-12 months since last menstrual period. http://purl.obolibrary.org/obo/OBI_0002414 postmenopausal status http://purl.obolibrary.org/obo/OBI_0002410 menopausal status A menopausal status indicating that it has been more than 12 months since the last menstrual period with no prior hysterectomy or that there has been a prior bilateral oophorectomy. http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that indicates the exposure of an individual to carcinogens in the workplace or environment. http://purl.obolibrary.org/obo/OBI_0002416 exposure to arsenic history http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history An exposure to environmental and workplace carcinogens history where the carcinogen is arsenic. http://purl.obolibrary.org/obo/OBI_0002417 exposure to asbestos history http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history An exposure to environmental and workplace carcinogens history where the carcinogen is asbestos. http://purl.obolibrary.org/obo/OBI_0002418 exposure to diesel exhaust history http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history An exposure to environmental and workplace carcinogens history where the carcinogen is diesel exhaust. http://purl.obolibrary.org/obo/OBI_0002419 exposure to chromium history http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history An exposure to environmental and workplace carcinogens history where the carcinogen is chromium. http://purl.obolibrary.org/obo/OBI_0002420 exposure to silica history http://purl.obolibrary.org/obo/OBI_0002415 exposure to environmental and workplace carcinogens history An exposure to environmental and workplace carcinogens history where the carcinogen is silica. http://purl.obolibrary.org/obo/OBI_0002423 age of majority inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that uses the age of majority for a state or institution, where one is generally considered to be an adult, which if met, makes an individual suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002424 chemotherapy treatment exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether chemotherapy was received or is being received for a previous or current cancer, which when met, makes an individual unsuitable for a given task or participation in a given process http://purl.obolibrary.org/obo/OBI_0002425 radiation treatment exclusion criteria http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether radiation was received or is being received for a previous or current cancer, which when met, makes an individual unsuitable for a given task or participation in a given process http://purl.obolibrary.org/obo/OBI_0002426 chemotherapy treatment within the recent past exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether chemotherapy was received within a certain timeframe, which when met, makes an individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002427 radiation treatment within the recent past exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that defines whether radiation was received within a certain timeframe, which when met, makes an individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002428 BMI range inclusion criterion http://purl.obolibrary.org/obo/OBI_0500027 inclusion criterion An inclusion criterion that defines and states a Body Mass Index range, which if met, makes an individual suitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002429 blood transfusion exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion that is defined by whether the specimen donor received a whole blood transfusion within a specified time frame prior to death, which if met, makes a specimen donor unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002430 history of metastatic cancer exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as whether an individual has ever been diagnosed with metastatic cancer (cancer that spread beyond the initial site such as to other organs like brain bone or liver), which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002431 intravenous drug use exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as when an individual has a history of intravenous drug abuse for a specific timeframe, which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002432 history of sex with someone with a history of blood borne infection exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as whether an individual has a history of sex with someone who has been diagnosed or at risk for a blood borne infections disease in a specified time frame, which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002433 history of sex with someone with a history of intravenous drugs exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as whether an individual has a history of sex with someone who has used intravenous drugs in a specified time frame, which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002434 HIV exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as whether an individual has a history of repeatedly reactive screening assays for HIV-1 or HIV-2 antibody regardless of the results of supplemental assays, which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002435 exposure to blood borne infectious disease exclusion criterion http://purl.obolibrary.org/obo/OBI_0500028 exclusion criterion An exclusion criterion defined as whether an individual has been exposed to a blood borne infections disease through needle sticks and/or contact with non-intact skin and/or contact with open wounds and/or contact with mucous membranes, which if met, makes the individual unsuitable for a given task or participation in a given process. http://purl.obolibrary.org/obo/OBI_0002989 material supplier http://purl.obolibrary.org/obo/BFO_0000040 material entity A person or organization that provides material supplies to other people or organizations. http://purl.obolibrary.org/obo/OBI_0002123 IHC slide staining http://purl.obolibrary.org/obo/OBI_0302887 staining A staining using labeled antibodies, i.e. the analytical part of immunohistochemistry. The staining is applied to fixed specimens on slides to identify biomarkers in tissues. http://purl.obolibrary.org/obo/OBI_0002124 H&E slide staining http://purl.obolibrary.org/obo/OBI_0302887 staining A staining using hematoxylin and eosin. The staining is applied to fixed specimens on slides to observe the whole structure and morphology of cells in a tissue; nuclei are stained dark blue/purple while cytoplasm is stained pink. http://purl.obolibrary.org/obo/OBI_0002125 H&E-stained fixed tissue slide specimen http://purl.obolibrary.org/obo/OMIABIS_0000052 obsolete fixed tissue slide specimen A fixed tissue slide specimen that is the output of H&E slide staining. http://purl.obolibrary.org/obo/OBI_0002599 swab specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that is stored on a swab as the output of a collecting specimen with swab process. http://purl.obolibrary.org/obo/OBI_0002600 collecting specimen with swab http://purl.obolibrary.org/obo/OBI_0000659 specimen collection process A specimen collection process that uses a swab as the collection device. A swab is an absorbent material (e.g. cotton) on a rod (e.g., wooden stick). http://purl.obolibrary.org/obo/OBI_0002603 areolar swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of an areola of a breast. http://purl.obolibrary.org/obo/OBI_0002604 breast swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a breast. http://purl.obolibrary.org/obo/OBI_0002605 cheek swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the cheek portion of the inside surface of a mouth. http://purl.obolibrary.org/obo/OBI_0002606 nasopharyngeal swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a nasopharynx. http://purl.obolibrary.org/obo/OBI_0002607 oral swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the inside surface of a mouth. http://purl.obolibrary.org/obo/OBI_0002608 oropharyngeal swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a oropharynx. http://purl.obolibrary.org/obo/OBI_0002609 rectal swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a rectum. http://purl.obolibrary.org/obo/OBI_0002610 tongue swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a tongue. http://purl.obolibrary.org/obo/OBI_0002611 vagina swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of a vagina. http://purl.obolibrary.org/obo/OBI_0002613 environmental swab specimen http://purl.obolibrary.org/obo/OBI_0002599 swab specimen A specimen that is collected with a swab from the surface of an environmenal material. http://purl.obolibrary.org/obo/OBI_0002614 birth cohort study design http://purl.obolibrary.org/obo/OBI_0500000 study design A cohort study design for which the subjects are followed from the time of birth usually including information about gestation and follow up. http://purl.obolibrary.org/obo/OBI_0002615 disease specific study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design for which material and information is collected from subjects that have already developed a particular disease. http://purl.obolibrary.org/obo/OBI_0002616 genealogical record http://purl.obolibrary.org/obo/IAO_0000310 document A document about the family relationships of persons related as members of a domestic group linked through descent from a common ancestor, marriage, or adoption. http://purl.obolibrary.org/obo/OBI_0002617 national registry http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that contains information about a nationwide group of individuals. http://purl.obolibrary.org/obo/OBI_0002618 national biomedical registry http://purl.obolibrary.org/obo/OBI_0002617 national registry A national registry that contains information about individuals that was accumulated for a biomedical purpose, such as diagnoses, treatments, or outcomes. http://purl.obolibrary.org/obo/OBIB_0000721 specimen ID http://purl.obolibrary.org/obo/IAO_0020000 identifier A proper name that identifies a specimen and is usually in form of a label included in the specimen cassette. http://purl.obolibrary.org/obo/OBIB_0000716 surgical procedure http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that uses operative manual and instrumental techniques on a patient to investigate and/or treat a pathological condition such as disease or injury, or to help improve bodily function or appearance. http://purl.obolibrary.org/obo/ICO_0000075 obsolete authorization document http://purl.obolibrary.org/obo/IAO_0000310 document A document that is the output of an authorization process. http://purl.obolibrary.org/obo/ICO_0000147 candidate eligible for study role http://purl.obolibrary.org/obo/ICO_0000146 eligibility of candidate participation A role inhering in a participant who meets all eligibility criteria defined within a study protocol. http://purl.obolibrary.org/obo/ICO_0000148 candidate ineligible for study role http://purl.obolibrary.org/obo/ICO_0000146 eligibility of candidate participation A role inhering in a participant who does not meet all eligibility criteria defined within the study protocol. http://purl.obolibrary.org/obo/FMA_37829 Skin of right leg http://purl.obolibrary.org/obo/UBERON_0002097 skin of body Right leg skin http://purl.obolibrary.org/obo/FMA_37830 Skin of left leg http://purl.obolibrary.org/obo/UBERON_0002097 skin of body Left leg skin http://purl.obolibrary.org/obo/NCBITaxon_10407 Hepatitis B virus http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses human hepatitis B virus HBV http://purl.obolibrary.org/obo/NCBITaxon_11103 Hepacivirus C http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses human hepatitis virus C HCV http://purl.obolibrary.org/obo/NCBITaxon_11676 Human immunodeficiency virus 1 http://purl.obolibrary.org/obo/NCBITaxon_11646 Lentivirus human immunodeficiency virus-1 HIV-1 http://purl.obolibrary.org/obo/NCBITaxon_11709 Human immunodeficiency virus 2 http://purl.obolibrary.org/obo/NCBITaxon_11646 Lentivirus human immunodeficiency virus type 2, HIV-2 http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region temporal instant. http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires human http://purl.obolibrary.org/obo/UO_0000003 time unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label time derived unit http://purl.obolibrary.org/obo/UO_0000005 temperature unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label temperature derived unit http://purl.obolibrary.org/obo/FMA_242207 Cortex of right frontal lobe http://purl.obolibrary.org/obo/UBERON_0000064 organ part Right frontal lobe cortex http://purl.obolibrary.org/obo/OMIABIS_0000002 obsolete settlement part of address of sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact city http://purl.obolibrary.org/obo/OMIABIS_0000003 obsolete biobank proper name http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Name of biobank http://purl.obolibrary.org/obo/OMIABIS_0000005 obsolete biobank idenfier with ISO 3166-1 alpha-2 code http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank ID http://purl.obolibrary.org/obo/OMIABIS_0000006 obsolete sample collection or study identifier http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study ID http://purl.obolibrary.org/obo/OMIABIS_0000007 obsolete ISO 3166-1 alpha-2 code for sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact country http://purl.obolibrary.org/obo/OMIABIS_0000010 obsolete biobank organization http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class biobank juristic person http://purl.obolibrary.org/obo/OMIABIS_0000014 obsolete name of biobank contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact person http://purl.obolibrary.org/obo/OMIABIS_0000015 obsolete email address of biobank contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact email http://purl.obolibrary.org/obo/OMIABIS_0000018 obsolete department of biobank contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact department http://purl.obolibrary.org/obo/OMIABIS_0000019 obsolete unique resource locator http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class uri http://purl.obolibrary.org/obo/OMIABIS_0000020 obsolete biobank's unique resource locator http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank URL http://purl.obolibrary.org/obo/OMIABIS_0000022 obsolete telephone number of biobank contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact phone http://purl.obolibrary.org/obo/OMIABIS_0000025 obsolete telephone number of sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact phone http://purl.obolibrary.org/obo/OMIABIS_0000027 obsolete postal code of biobank contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact ZIP http://purl.obolibrary.org/obo/OMIABIS_0000028 obsolete ISO 3166-1 alpha-2 code for biobank contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank country code http://purl.obolibrary.org/obo/OMIABIS_0000030 obsolete settlement part of address biobank contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact city http://purl.obolibrary.org/obo/OMIABIS_0000032 obsolete intra-settlement specification part of address of biobank contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank contact address http://purl.obolibrary.org/obo/OMIABIS_0000033 obsolete hosted study collection http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Hosted studies http://purl.obolibrary.org/obo/OMIABIS_0000035 obsolete email address of sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact email http://purl.obolibrary.org/obo/OMIABIS_0000036 obsolete sample collection or study aim description http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample collection or study description http://purl.obolibrary.org/obo/OMIABIS_0000037 obsolete study proper name http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Study name http://purl.obolibrary.org/obo/OMIABIS_0000038 obsolete name of sample collection responsible or principal investigator http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection Responsible / Principal Investigator http://purl.obolibrary.org/obo/OMIABIS_0000039 obsolete name of sample collection or study contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact person http://purl.obolibrary.org/obo/OMIABIS_0000040 obsolete department of sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact department http://purl.obolibrary.org/obo/OMIABIS_0000043 obsolete intra-settlement specification part of address of sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact address http://purl.obolibrary.org/obo/OMIABIS_0000044 obsolete postal code for sample collection or study contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Sample Collection/Study contact ZIP http://purl.obolibrary.org/obo/OMIABIS_0000045 obsolete biobank location ISO 3166-1 alpha-2 code http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class Biobank country code http://purl.obolibrary.org/obo/OMIABIS_0000912 obsolete addition of molecular label http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class labeling http://purl.obolibrary.org/obo/OMIABIS_0001002 obsolete patient registry data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class patient register data http://purl.obolibrary.org/obo/OMIABIS_0001009 obsolete primary diagnosis http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class main diagnosis http://purl.obolibrary.org/obo/OMIABIS_0001029 obsolete age interval information for sampled donors http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class sampled group age interval http://purl.obolibrary.org/obo/OMIABIS_0001039 obsolete date of specimen collection http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class date of specimen preparation http://purl.obolibrary.org/obo/OMIABIS_0001040 obsolete specimen meeting specification http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class adherance to specification http://purl.obolibrary.org/obo/OMIABIS_0001079 obsolete specimen donor http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class sample donor http://purl.obolibrary.org/obo/OMIABIS_0001080 obsolete sample handling http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class specimen handling http://purl.obolibrary.org/obo/CHEBI_6015 isoflurane http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Isoflurane http://purl.obolibrary.org/obo/CHEBI_7773 Ondansetron http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Ondansetron http://purl.obolibrary.org/obo/NCBITaxon_10376 Human gammaherpesvirus 4 http://purl.obolibrary.org/obo/NCBITaxon_10292 Herpesviridae Human herpesvirus type 4 http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/OBI_0100026 organism eubacteria http://purl.obolibrary.org/obo/NCBITaxon_11646 Lentivirus http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses Lentivirinae http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata bony vertebrates http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/OBI_0100026 organism eukaryotes http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi tetrapods http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda amniotes http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota mammals http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria vertebrates http://purl.obolibrary.org/obo/UBERON_0006911 digestive system secreted substance http://purl.obolibrary.org/obo/UBERON_0000463 organism substance digestive system fluid or secretion http://purl.obolibrary.org/obo/OMIABIS_0001008 obsolete comorbidity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class secondary infection, nosocomial infection http://purl.obolibrary.org/obo/CHEBI_27338 xylene http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity xylene http://purl.obolibrary.org/obo/FMA_15584 Cortex of left kidney http://purl.obolibrary.org/obo/UBERON_0000064 organ part Left renal cortex http://purl.obolibrary.org/obo/FMA_17181 Wall of distal part of ileum http://purl.obolibrary.org/obo/UBERON_0000064 organ part Wall of distal ileum http://purl.obolibrary.org/obo/FMA_19972 Anterior wall of vagina http://purl.obolibrary.org/obo/UBERON_0000064 organ part Paries anterior (vagina) http://purl.obolibrary.org/obo/FMA_19973 Posterior wall of vagina http://purl.obolibrary.org/obo/UBERON_0000064 organ part Paries posterior (vagina) http://purl.obolibrary.org/obo/IAO_8000000 ontology module http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part ontology file http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/NCBITaxon_10292 Herpesviridae http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses http://purl.obolibrary.org/obo/NCBITaxon_388799 HIV-1 group O http://purl.obolibrary.org/obo/NCBITaxon_11676 Human immunodeficiency virus 1 http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000182 history http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000024 fiat object part http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000027 object aggregate http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000142 one-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000146 two-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000147 zero-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000029 site http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/UO_0000001 length unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/UO_0000002 mass unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/UO_0000051 concentration unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/UO_0000095 volume unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/IAO_0000429 email address http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/IAO_0000582 time stamped measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.obolibrary.org/obo/DRON_00015464 Paraffin http://purl.obolibrary.org/obo/OBI_0000047 processed material http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2157 Archaea http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/OMIABIS_0000000 obsolete biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000001 obsolete human biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000004 obsolete ISO 3166-1 alpha-2 code http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000011 obsolete contacting http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000012 obsolete contact role http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000013 obsolete biobank contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000016 obsolete postal address of biobank contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000017 obsolete department http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000021 obsolete telephone number http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000023 obsolete post-office box number http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000024 obsolete post-office box http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000026 obsolete postal code http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000029 obsolete settlement part of address http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000031 obsolete intra-settlement specification part of address http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000034 obsolete name of hosted study collection http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000041 obsolete street http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000046 obsolete CTEP organization identifier http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000047 obsolete biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifier http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000049 obsolete bone marrow specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000050 obsolete fixed tissue specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000051 obsolete fixed tissue block specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000052 obsolete fixed tissue slide specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000053 obsolete flash frozen specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000054 obsolete fresh tissue specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000055 obsolete frozen tissue block specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000056 obsolete frozen tissue slide specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000057 obsolete microdissected specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000060 obsolete survey data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000061 obsolete sampling specimens for biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000093 obsolete biobank contact role http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000094 obsolete sample collection or study contact role http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000099 obsolete sample collection or study contact person http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000100 obsolete study principle investigator or responsible http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_00001006 obsolete specimen disease state datum http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_00001010 obsolete diseased state specimen datum http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_00001011 obsolete mixed state specimen datum http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_00001012 obsolete normal state specimen datum http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_00001013 obsolete unknown state specimen data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0000911 obsolete fixation http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001000 obsolete age interval information http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001001 obsolete average age http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001003 obsolete survey data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001004 obsolete date of data entry http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001005 obsolete date of data update http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001006 obsolete end date of sampling for biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001007 obsolete start date of sampling for biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001010 obsolete count of current sampled human study participant http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001011 obsolete count of current total human study participant http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001012 obsolete physiological measurement data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001013 obsolete storage temperature setting http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001014 obsolete omics experiment on specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001015 obsolete number of sampled human study participants objective http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001016 obsolete number of total human study participant objective http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001017 obsolete case control study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001018 obsolete cross sectional study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001019 obsolete longitudinal study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001020 obsolete cohort study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001021 obsolete panel study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001022 obsolete population based study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001023 obsolete quality control study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001024 obsolete twin study design http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001025 obsolete survey plan specification http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001026 obsolete medical record http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001027 obsolete sample medical record http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001028 obsolete sample handling summary http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001031 obsolete donor patient registry data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001032 obsolete study subject survey data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001033 obsolete sample collection data entry http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001034 obsolete sample collection data update http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001035 obsolete survey execution http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001036 obsolete temperature regulating http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001037 obsolete comment from tissue procurement http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001038 obsolete specimen measurement http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001041 obsolete surgical procedure http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001042 obsolete specimen preparation contact http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001043 obsolete time in formalin measurement http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001044 obsolete specimen surgical removal http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001045 obsolete specimen freezing http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001046 obsolete specimen ID http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001047 obsolete case ID http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001048 obsolete specimen measurement specification http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001049 obsolete time of specimen freezing http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001050 obsolete time of surgical removal of specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001054 obsolete normal specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001075 obsolete cerebrospinal fluid specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001076 obsolete faeces specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001077 obsolete saliva specimen http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001078 obsolete hosting biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001081 obsolete start of sampling specimens for biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/OMIABIS_0001082 obsolete end of sampling specimens for biobank http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/CHEBI_38877 intravenous anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867 anaesthetic http://purl.obolibrary.org/obo/CHEBI_38870 inhalation anaesthetic http://purl.obolibrary.org/obo/CHEBI_38867 anaesthetic http://purl.obolibrary.org/obo/FMA_22109 Right tibial nerve http://purl.obolibrary.org/obo/UBERON_0001323 tibial nerve http://purl.obolibrary.org/obo/FMA_22110 Left tibial nerve http://purl.obolibrary.org/obo/UBERON_0001323 tibial nerve http://purl.obolibrary.org/obo/HANCESTRO_0463 American http://purl.obolibrary.org/obo/HANCESTRO_0004 ancestry category http://purl.obolibrary.org/obo/HANCESTRO_0019 Japanese http://purl.obolibrary.org/obo/HANCESTRO_0008 Asian http://purl.obolibrary.org/obo/HANCESTRO_0021 Chinese http://purl.obolibrary.org/obo/HANCESTRO_0008 Asian http://purl.obolibrary.org/obo/HANCESTRO_0487 Indian http://purl.obolibrary.org/obo/HANCESTRO_0008 Asian http://purl.obolibrary.org/obo/HANCESTRO_0590 European American http://purl.obolibrary.org/obo/HANCESTRO_0463 American http://purl.obolibrary.org/obo/HANCESTRO_0568 African American http://purl.obolibrary.org/obo/HANCESTRO_0463 American http://purl.obolibrary.org/obo/NCBITaxon_10358 Cytomegalovirus http://purl.obolibrary.org/obo/NCBITaxon_10292 Herpesviridae http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/FMA_83876 Right hemisphere of cerebellum http://purl.obolibrary.org/obo/UBERON_0000064 organ part http://purl.obolibrary.org/obo/FMA_24980 Right leg http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/FMA_24981 Left leg http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/FMA_57987 Right mammary gland http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/FMA_63008 Mucosa of abdominal part of esophagus http://purl.obolibrary.org/obo/UBERON_0002469 esophagus mucosa http://purl.obolibrary.org/obo/FMA_63062 Muscularis mucosae of abdominal part of esophagus http://purl.obolibrary.org/obo/UBERON_0004648 esophagus muscularis mucosa http://purl.obolibrary.org/obo/FMA_43899 Left posterior tibial artery http://purl.obolibrary.org/obo/UBERON_0007610 tibial artery http://purl.obolibrary.org/obo/OMRSE_00000050 Homo sapiens role http://purl.obolibrary.org/obo/OMRSE_00000048 material entity role http://purl.obolibrary.org/obo/IAO_8000016 taxonomic bridge ontology module http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000020 EL++ ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/NCIT_C126303 Tubulocystic Renal Cell Carcinoma Tubulocystic Renal Cell Cancer A rare, cytologically high grade carcinoma that arises from the renal parenchyma. It is characterized by the presence of prominently dilated cystic spaces in a bland, fibrotic stroma. The lining cells have large irregular nuclei with prominent nucleoli and abundant eosinophilic cytoplasm. Necrosis and mitotic figures are not present. It rarely metastasizes. http://purl.obolibrary.org/obo/NCIT_C27891 Renal Cell Carcinoma Associated with Xp11.2 Translocations/TFE3 Gene Fusions TFE3-Rearranged Renal Cell Carcinoma A group of renal cell carcinomas characterized by the presence of different translocations involving the chromosome Xp11.2. These translocations result in the creation of gene fusions involving the TFE3 gene. Patients are usually children and young adults. Morphologically, the malignant epithelial cells form papillary patterns. http://purl.obolibrary.org/obo/NCIT_C40037 Borderline Ovarian Mucinous Tumor, Intestinal Type Borderline Ovarian Mucinous Tumor, Intestinal Type A neoplasm of low malignant potential arising from the ovary. It is characterized by the proliferation of neoplastic mucinous epithelial cells that resemble intestinal epithelial cells. There is no evidence of stromal invasion. http://purl.obolibrary.org/obo/NCIT_C40038 Borderline Ovarian Mucinous Tumor, Endocervical-Like Borderline Ovarian Mucinous Tumor, Endocervical-Like A neoplasm of low malignant potential arising from the ovary. It is characterized by the proliferation of neoplastic epithelial cells that resemble endocervical epithelial cells. There is no evidence of stromal invasion. http://purl.obolibrary.org/obo/NCIT_C40080 Borderline Ovarian Clear Cell Tumor Clear cell cystic tumor of borderline malignancy An epithelial neoplasm with low malignant potential affecting the ovary. It is characterized by the presence of clear or hobnail cells. In some cases, the cells may display nuclear atypia and prominent nucleoli. When such cells are present, they remain confined to the glands. There is no evidence of stromal invasion. http://purl.obolibrary.org/obo/NCIT_C40088 Borderline Ovarian Transitional Cell Tumor Borderline Ovarian Transitional Cell Neoplasm An ovarian epithelial neoplasm that resembles the transitional cell neoplasms found in the urinary tract. It is characterized by the presence of atypia and absence of stromal invasion. http://purl.obolibrary.org/obo/NCIT_C4509 Ovarian Undifferentiated Carcinoma Ovarian Undifferentiated Carcinoma An aggressive carcinoma arising from the ovary. Most patients present with advanced disease. Microscopically, it is characterized by significant cytologic atypia, increased mitotic activity, and necrosis. The prognosis is usually poor. http://purl.obolibrary.org/obo/NCIT_C45502 Lung Squamous Cell Carcinoma, Papillary Variant Lung Squamous Cell Carcinoma, Papillary Variant A morphologic variant of squamous cell lung carcinoma characterized by the presence of papillary structures. http://purl.obolibrary.org/obo/NCIT_C45503 Lung Squamous Cell Carcinoma, Clear Cell Variant Lung Squamous Cell Carcinoma, Clear Cell Variant A morphologic variant of squamous cell lung carcinoma characterized by the presence of clear cells. http://purl.obolibrary.org/obo/NCIT_C45504 Lung Squamous Cell Carcinoma, Small Cell Variant Lung Squamous Cell Carcinoma, Small Cell Variant A poorly differentiated morphologic variant of squamous cell lung carcinoma characterized by the presence of small tumor cells with focal squamous differentiation. http://purl.obolibrary.org/obo/NCIT_C45512 Lung Colloid Adenocarcinoma Lung Mucinous Cystic Tumor of Borderline Malignancy A morphologic variant of lung adenocarcinoma characterized by the presence of mucin pools containing islands of well differentiated adenocarcinoma cells. http://purl.obolibrary.org/obo/NCIT_C45514 Lung Signet Ring Cell Carcinoma Lung Signet-Ring Cell Carcinoma A morphologic variant of lung adenocarcinoma characterized by the presence of signet ring cells. http://purl.obolibrary.org/obo/NCIT_C5226 Borderline Ovarian Serous Tumor Serous Tumor of the Ovary with Low Malignant Potential A low grade serous epithelial neoplasm arising from the ovary. It is characterized by an atypical proliferation of serous-type epithelial cells without evidence of stromal invasion. It is often asymptomatic but rarely it may present with abdominal pain or abdominal enlargement due to rupture or torsion. http://purl.obolibrary.org/obo/NCIT_C5651 Solid Lung Adenocarcinoma Solid adenocarcinoma A morphologic variant of lung adenocarcinoma characterized by the presence of polygonal malignant cells forming sheets. Acinar, papillary, micropapillary, or lepidic growth patterns are absent. If the tumor is 100 percent solid, intracellular mucin should be present in at least five tumor cells in each of two high-power fields and confirmed with mucin immunohistochemical stains. Tumors formerly classified as large cell carcinomas expressing pneumocyte immunohistochemical markers, even if intracellular mucin is absent, are now included in this category. http://purl.obolibrary.org/obo/NCIT_C7100 Colon Undifferentiated Carcinoma Undifferentiated Colon Cancer An invasive malignant epithelial tumor that arises from the colon. There is no morphologic, immunophenotypic, or molecular biological evidence of glandular or squamous differentiation. http://purl.obolibrary.org/obo/NCIT_C7983 Borderline Ovarian Endometrioid Tumor/Atypical Proliferative Ovarian Endometrioid Tumor Endometrioid tumor of low malignant potential An epithelial neoplasm that arises from the ovary characterized by the presence of glandular or cystic spaces which contain atypical glandular epithelial cells resembling endometrial cells. The surrounding ovarian stroma is often fibrotic. There is no evidence of stromal invasion. http://purl.obolibrary.org/obo/NCIT_C7281 Borderline Ovarian Seromucinous Tumor/Atypical Proliferative Ovarian Seromucinous Tumor Borderline Ovarian Seromucinous Tumor/Atypical Proliferative Ovarian Seromucinous Tumor A low grade, non-invasive ovarian epithelial neoplasm characterized by the presence of atypical neoplastic serous and mucinous cells. http://purl.obolibrary.org/obo/BFO_0000001 entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/RO_0002234 has output http://purl.obolibrary.org/obo/RO_0000057 has participant produces p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p. http://purl.obolibrary.org/obo/RO_0000079 function of http://purl.obolibrary.org/obo/RO_0000052 characteristic of is function of a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000080 quality of http://purl.obolibrary.org/obo/RO_0000052 characteristic of quality_of a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000085 has function http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_function a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000086 has quality http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_quality a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002350 member of http://purl.obolibrary.org/obo/BFO_0000050 part of member part of is member of is a mereological relation between a item and a collection. http://purl.obolibrary.org/obo/RO_0000087 has role http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_role a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/BFO_0000062 preceded by http://purl.obolibrary.org/obo/RO_0002222 temporally related to preceded_by x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0000081 role of http://purl.obolibrary.org/obo/RO_0000052 characteristic of role_of a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002233 has input http://purl.obolibrary.org/obo/RO_0000057 has participant consumes p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes influences (processual) p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. http://purl.obolibrary.org/obo/BFO_0000184 history of http://purl.obolibrary.org/obo/BFO_0000066 occurs in [copied from inverse property 'has history'] b has_history c iff c history_of b [XXX-001 http://purl.obolibrary.org/obo/BFO_0000185 has history http://purl.obolibrary.org/obo/BFO_0000067 contains process b has_history c iff c history_of b [XXX-001 http://purl.obolibrary.org/obo/BFO_0000063 precedes http://purl.obolibrary.org/obo/RO_0002222 temporally related to x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/IAO_0000219 denotes http://purl.obolibrary.org/obo/IAO_0000136 is about A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically http://purl.obolibrary.org/obo/IAO_0000221 is quality measurement of http://purl.obolibrary.org/obo/IAO_0000136 is about m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q http://purl.obolibrary.org/obo/IAO_0000413 is duration of http://purl.obolibrary.org/obo/IAO_0000136 is about relates a process to a time-measurement-datum that represents the duration of the process http://purl.obolibrary.org/obo/IAO_0000581 has time stamp http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken http://purl.obolibrary.org/obo/IAO_0000583 has measurement datum http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the measurement datum that was measured http://purl.obolibrary.org/obo/OBI_0000107 provides_service_consumer_with http://purl.obolibrary.org/obo/BFO_0000051 has part A relation between a service and the primary processual part of the service that is performed by the provider for the consumer. http://purl.obolibrary.org/obo/OBI_0000293 has_specified_input http://purl.obolibrary.org/obo/RO_0000057 has participant The inverse property of is_specified_input_of http://purl.obolibrary.org/obo/OBI_0000295 is_specified_input_of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000299 has_specified_output http://purl.obolibrary.org/obo/RO_0000057 has participant The inverse property of is_specified_output_of http://purl.obolibrary.org/obo/OBI_0000312 is_specified_output_of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000643 has grain http://purl.obolibrary.org/obo/BFO_0000051 has part the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car. http://purl.obolibrary.org/obo/OBI_0001927 specifies value of http://purl.obolibrary.org/obo/IAO_0000136 is about A relation between a value specification and an entity which the specification is about. http://purl.obolibrary.org/obo/OBI_0001937 has specified numeric value http://purl.obolibrary.org/obo/OBI_0002135 has specified value A relation between a value specification and a number that quantifies it. http://purl.obolibrary.org/obo/OBI_0001938 has value specification http://purl.obolibrary.org/obo/BFO_0000051 has part A relation between an information content entity and a value specification that specifies its value. http://purl.obolibrary.org/obo/RO_0002223 starts http://purl.obolibrary.org/obo/RO_0002222 temporally related to inverse of starts with http://purl.obolibrary.org/obo/RO_0002351 has member http://purl.obolibrary.org/obo/BFO_0000051 has part has member is a mereological relation between a collection and an item. http://purl.obolibrary.org/obo/RO_0002305 causally upstream of, negative effect http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q. http://purl.obolibrary.org/obo/RO_0000091 has disposition http://purl.obolibrary.org/obo/RO_0000053 has characteristic a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002411 causally upstream of http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q. http://purl.obolibrary.org/obo/RO_0002211 regulates http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q. http://purl.obolibrary.org/obo/RO_0002212 negatively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q. http://purl.obolibrary.org/obo/RO_0002180 has component http://purl.obolibrary.org/obo/BFO_0000051 has part w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. http://purl.obolibrary.org/obo/RO_0002352 input of http://purl.obolibrary.org/obo/RO_0000056 participates in inverse of has input http://purl.obolibrary.org/obo/RO_0002353 output of http://purl.obolibrary.org/obo/RO_0000056 participates in inverse of has output http://purl.obolibrary.org/obo/OBIB_0000734 is contact information about http://purl.obolibrary.org/obo/IAO_0000136 is about a is contact information for b, if a is a information content entity, b is a human being or an organization and a identifies a physical location or electronic resource that allows to initiate communication with a. http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes http://purl.obolibrary.org/obo/RO_0002410 causally related to p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. http://purl.obolibrary.org/obo/RO_0002295 results in developmental progression of http://purl.obolibrary.org/obo/RO_0002324 developmentally related to p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). http://purl.obolibrary.org/obo/RO_0002297 results in formation of http://purl.obolibrary.org/obo/RO_0002295 results in developmental progression of http://purl.obolibrary.org/obo/RO_0000092 disposition of http://purl.obolibrary.org/obo/RO_0000052 characteristic of http://purl.obolibrary.org/obo/IAO_0000039 has measurement unit label http://purl.obolibrary.org/obo/BFO_0000051 has part http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0000052 characteristic of inheres_in a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. http://purl.obolibrary.org/obo/RO_0000053 has characteristic is bearer of Inverse of characteristic_of http://purl.obolibrary.org/obo/RO_0000056 participates in participates_in a relation between a continuant and a process, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0000057 has participant has_participant a relation between a process and a continuant, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0001000 derives from derives_from a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001001 derives into derives_into a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001015 location of location_of a relation between two independent continuants, the location and the target, in which the target is entirely within the location http://purl.obolibrary.org/obo/RO_0002000 2D boundary of is boundary of a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0002002 has 2D boundary has_2D_boundary a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0001025 located in located_in a relation between two independent continuants, the target and the location, in which the target is entirely within the location http://purl.obolibrary.org/obo/BFO_0000051 has part has_part a core relation that holds between a whole and its part http://purl.obolibrary.org/obo/BFO_0000050 part of part_of a core relation that holds between a part and its whole http://purl.obolibrary.org/obo/BFO_0000066 occurs in unfolds_in b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t http://purl.obolibrary.org/obo/RO_0002324 developmentally related to A relationship that holds between entities participating in some developmental process (GO:0032502) http://purl.obolibrary.org/obo/OBI_0002135 has specified value A relation between a value specification and a literal. http://purl.obolibrary.org/obo/BFO_0000067 contains process [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t http://purl.obolibrary.org/obo/IAO_0000136 is about A (currently) primitive relation that relates an information artifact to an entity. http://purl.obolibrary.org/obo/IAO_0000417 is quality measured as inverse of the relation of is quality measurement of http://purl.obolibrary.org/obo/OBI_0000124 is_supported_by_data The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process http://purl.obolibrary.org/obo/OBI_0000417 achieves_planned_objective This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0000833 objective_achieved_by This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0000846 is member of organization Relating a legal person or organization to an organization in the case where the legal person or organization has a role as member of the organization. http://purl.obolibrary.org/obo/OBI_0001637 has disposition to bind A relationship between two material entitites that each have disposition to form a complex with the other. http://purl.obolibrary.org/obo/OBI_0001688 has organization member Relating an organization to a legal person or organization. http://purl.obolibrary.org/obo/RO_0000058 is concretized as A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants. http://purl.obolibrary.org/obo/RO_0000059 concretizes A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant. http://purl.obolibrary.org/obo/IAO_0020012 designates x designates y, if for any given group of language users, x is an information content entity, is about y, and represents y in a linguistic context.. http://purl.obolibrary.org/obo/IAO_0020018 is designated by p1 is designated by p2, if p2 is an information content entity that represents p1 in a linguistic context. http://purl.obolibrary.org/obo/OBIB_0000037 has maximum capacity A relation that relates a container to a measurement datum that specifies the maximum capacity of the container. http://purl.obolibrary.org/obo/OBIB_0000038 has actual load A relation that relates a container to a measurement datum that specifies the actual amount of material in the container. http://purl.obolibrary.org/obo/GEO_000000329 is subordinate authority of A governing organization G1 is subordinate to another governing organization G2 iff there is some authority possessed by G2 that is not possessed by G1 and G1's jurisdiction falls within the relevant jurisdiction of G2. http://purl.obolibrary.org/obo/IAO_0000235 denoted by inverse of the relation 'denotes' http://purl.obolibrary.org/obo/OBIB_0000733 administrates a administrates b if c owns b and some rights and obligations grounded in the owning relation regarding b are transferred from c to a. http://purl.obolibrary.org/obo/OBIB_0000735 is owned by a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b. http://purl.obolibrary.org/obo/RO_0002410 causally related to relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. http://purl.obolibrary.org/obo/BFO_0000054 realized in realized_in http://purl.obolibrary.org/obo/BFO_0000055 realizes http://purl.obolibrary.org/obo/IAO_0000004 has measurement value http://purl.obolibrary.org/obo/OMIABIS_0000008 obsolete owns http://purl.obolibrary.org/obo/OMIABIS_0000009 obsolete administrates http://purl.obolibrary.org/obo/OMIABIS_0000042 obsolete is contact information about http://purl.obolibrary.org/obo/OMIABIS_0000048 obsolete is owned by http://purl.obolibrary.org/obo/RO_0004096 DEPRECATED inheres in http://purl.obolibrary.org/obo/RO_0004097 DEPRECATED bearer of http://purl.obolibrary.org/obo/BFO_0000156 has temporal occupant http://purl.obolibrary.org/obo/OMRSE_00000020 is-aggregate-of http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/cl#lacks_part lacks_part http://purl.obolibrary.org/obo/IDO_0000660 results_in http://purl.obolibrary.org/obo/OBIB_0000732 owns