Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module subset ontology An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms. http://purl.obolibrary.org/obo/OGMS_0000105 relapse http://purl.obolibrary.org/obo/OBI_0000278 disease stage recurrent A disease stage which is preceded by a remission and characterized by the return of a manifestation of a disease. http://purl.obolibrary.org/obo/OGMS_0000089 congenital disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity congenital malformation A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism. http://purl.obolibrary.org/obo/OGMS_0000124 routine health care encounter http://purl.obolibrary.org/obo/OGMS_0000099 outpatient encounter routine clinical visit A health care encounter that is regularly scheduled for the purpose of health monitoring. http://purl.obolibrary.org/obo/OGMS_0000125 follow-up health care encounter http://purl.obolibrary.org/obo/OGMS_0000099 outpatient encounter follow-up clinical visit A health care encounter that is scheduled for the purpose of assessing a known set of specific issues http://purl.obolibrary.org/obo/IAO_8000002 editors ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module source ontology module An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users. http://purl.obolibrary.org/obo/IAO_8000005 import ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module import file A subset ontology module that is intended to be imported from another ontology. http://purl.obolibrary.org/obo/IAO_8000009 single layer subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module ribbon subset A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint. http://purl.obolibrary.org/obo/IAO_8000010 exclusion subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module antislim A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes. http://purl.obolibrary.org/obo/IAO_8000011 external import ontology module http://purl.obolibrary.org/obo/IAO_8000005 import ontology module external import An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach. http://purl.obolibrary.org/obo/IAO_8000012 species subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module taxon subset A subset ontology that is crafted to either include or exclude a taxonomic grouping of species. http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof. http://purl.obolibrary.org/obo/OGMS_0000129 physical sign http://purl.obolibrary.org/obo/BFO_0000040 material entity An abnormal material entity that is part of a patient and hypothesized to be clinically relevant. http://purl.obolibrary.org/obo/OGMS_0000130 allergic disease process http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process The process in which an allergic disease unfolds. http://purl.obolibrary.org/obo/OGMS_0000131 cancer process http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process The process in which cancer unfolds http://purl.obolibrary.org/obo/OGMS_0000132 autoimmune disease process http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process The process in which an autoimmune disease unfolds. http://purl.obolibrary.org/obo/OGMS_0000135 cancer progression stage 0 http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage A cancer progression stage characterized by abnormal cellular growth contained within normal tissue boundaries (e.g. carcinoma in situ). http://purl.obolibrary.org/obo/OGMS_0000136 cancer progression stage I http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass. http://purl.obolibrary.org/obo/OGMS_0000137 cancer progression stage II http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage A cancer progression stage characterized by abnormal cellular growth that extends well beyond normal local tissue boundaries as a contiguous mass. http://purl.obolibrary.org/obo/OGMS_0000138 cancer progression stage III http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass and includes metastasis to one or more regional draining lymph nodes. http://purl.obolibrary.org/obo/OGMS_0000139 cancer progression stage IV http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage A cancer progression stage characterized by abnormal cellular growth that extends through normal local tissue boundaries as a contiguous mass and includes metastasis to other distant tissues besides lymph nodes. http://purl.obolibrary.org/obo/OGMS_0000140 infectious disease process http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process The process in which an infectious disease unfolds http://purl.obolibrary.org/obo/OGMS_0000141 processual sign http://purl.obolibrary.org/obo/BFO_0000015 process An abnormal processual entity occuring in a patient that is hypothesized to be clinically relevant. http://purl.obolibrary.org/obo/OGMS_0000142 qualitative sign http://purl.obolibrary.org/obo/BFO_0000019 quality An abnormal observable quality of a part of a patient that is hypothesized to be clinically relevant. http://purl.obolibrary.org/obo/OGMS_0000143 transplantation http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure A therapeutic procedure in which a body part is transferred into a organism http://purl.obolibrary.org/obo/OGMS_0000144 solid organ transplant http://purl.obolibrary.org/obo/OGMS_0000143 transplantation A transplantation in which the body part is a non-fluid tissue http://purl.obolibrary.org/obo/OGMS_0000145 transfusion http://purl.obolibrary.org/obo/OGMS_0000143 transplantation A transplantation in which the body part is a bodily fluid http://purl.obolibrary.org/obo/OGMS_0000146 tissue disorder http://purl.obolibrary.org/obo/OGMS_0000045 disorder A disorder of some macroscopic part of a tissue http://purl.obolibrary.org/obo/OGMS_0000147 neoplasm http://purl.obolibrary.org/obo/OGMS_0000146 tissue disorder A tissue disorder that has resulted from a dysregulation of cell proliferation leading to a net increase in mass http://purl.obolibrary.org/obo/OGMS_0000107 ancillary health care process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that has the objective to support the objective of a health care process without directly involving the treatment, diagnosis, or prevention of disease or injury of a patient. http://purl.obolibrary.org/obo/OGMS_0000108 health care process assay http://purl.obolibrary.org/obo/OGMS_0000096 health care process A health care process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. http://purl.obolibrary.org/obo/OGMS_0000110 health care process data transformation http://purl.obolibrary.org/obo/OGMS_0000096 health care process A health care process that produces output from input data http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/BFO_0000015 process b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) http://purl.obolibrary.org/obo/BFO_0000145 relational quality http://purl.obolibrary.org/obo/BFO_0000019 quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A generically dependent continuant that is about some thing. http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. http://purl.obolibrary.org/obo/IAO_0000078 curation status specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part http://purl.obolibrary.org/obo/IAO_0000027 data item Data about an ontology part is a data item about a part of an ontology, for example a term http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000409 denotator type http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part A denotator type indicates how a term should be interpreted from an ontological perspective. http://purl.obolibrary.org/obo/IDO_0000586 infection http://purl.obolibrary.org/obo/BFO_0000040 material entity A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population. http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process A process that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000278 disease stage http://purl.obolibrary.org/obo/BFO_0000015 process a part of an occurrence of a disease process which is associated with position in the normal progression of the disease http://purl.obolibrary.org/obo/OGMS_0000015 clinical history http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item A series of statements representing health-relevant qualities of a patient and of a patient's family. http://purl.obolibrary.org/obo/OGMS_0000023 phenotype http://purl.obolibrary.org/obo/BFO_0000019 quality A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. http://purl.obolibrary.org/obo/OGMS_0000031 disease http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. http://purl.obolibrary.org/obo/OGMS_0000063 disease course http://purl.obolibrary.org/obo/BFO_0000015 process The totality of all processes through which a given disease instance is realized. http://purl.obolibrary.org/obo/OGMS_0000090 treatment http://purl.obolibrary.org/obo/OGMS_0000096 health care process A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate a disorder, the signs and symptoms of a disorder, or a pathological process http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter http://purl.obolibrary.org/obo/OGMS_0000096 health care process A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter http://purl.obolibrary.org/obo/OGMS_0000104 diagnostic process http://purl.obolibrary.org/obo/OGMS_0000096 health care process A health care process that involves the interpretation of a clinical picture from a given patient (input) and the assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these (output). http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process http://purl.obolibrary.org/obo/OGMS_0000060 bodily process A bodily process that is clinically abnormal. http://purl.obolibrary.org/obo/OGMS_0000087 extended organism http://purl.obolibrary.org/obo/BFO_0000040 material entity An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism. http://purl.obolibrary.org/obo/OGMS_0000106 remission http://purl.obolibrary.org/obo/OBI_0000278 disease stage A disease stage which is characterized by the lack of a manifestation of a disease http://purl.obolibrary.org/obo/OGMS_0000016 clinical picture http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings. http://purl.obolibrary.org/obo/OGMS_0000017 image finding http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding A representation of an image that supports an inference to an assertion about some quality of a patient. http://purl.obolibrary.org/obo/OGMS_0000018 laboratory finding http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient. http://purl.obolibrary.org/obo/OGMS_0000019 preclinical finding http://purl.obolibrary.org/obo/IAO_0000027 data item A representation of a quality of a patient that is (1) recorded by a clinician because the quality is hypothesized to be of clinical significance and (2) refers to qualities obtaining in the patient prior to their becoming detectable in a clinical history taking or physical examination. http://purl.obolibrary.org/obo/OGMS_0000022 manifestation of a disease http://purl.obolibrary.org/obo/BFO_0000019 quality A quality of a patient that is (a) a deviation from clinical normality that exists in virtue of the realization of a disease and (b) is observable. http://purl.obolibrary.org/obo/OGMS_0000025 clinical manifestation of a disease http://purl.obolibrary.org/obo/OGMS_0000022 manifestation of a disease A manifestation of a disease that is detectable in a clinical history taking or physical examination. http://purl.obolibrary.org/obo/OGMS_0000026 preclinical manifestation of a disease http://purl.obolibrary.org/obo/OGMS_0000022 manifestation of a disease A manifestation of a disease that exists prior to the time at which it would be detected in a clinical history taking or physical examination, if the patient were to present to a clinician. A realization of a disease that exists prior to its becoming detectable in a clinical history taking or physical examination. http://purl.obolibrary.org/obo/OGMS_0000027 clinical phenotype http://purl.obolibrary.org/obo/OGMS_0000023 phenotype A clinically abnormal phenotype. http://purl.obolibrary.org/obo/OGMS_0000028 disease phenotype http://purl.obolibrary.org/obo/OGMS_0000023 phenotype A clinically abnormal phenotype that is characteristic of a single disease. http://purl.obolibrary.org/obo/OGMS_0000029 vital sign http://purl.obolibrary.org/obo/OGMS_0000129 physical sign A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive. http://purl.obolibrary.org/obo/OGMS_0000030 predisposition to disease of type X http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X. http://purl.obolibrary.org/obo/OGMS_0000033 genetic predisposition to disease of type X http://purl.obolibrary.org/obo/OGMS_0000030 predisposition to disease of type X A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X. http://purl.obolibrary.org/obo/OGMS_0000034 acquired genetic disease http://purl.obolibrary.org/obo/OGMS_0000031 disease A disease whose physical basis is an acquired genetic disorder. http://purl.obolibrary.org/obo/OGMS_0000035 constitutional genetic disease http://purl.obolibrary.org/obo/OGMS_0000031 disease A disease whose physical basis is a constitutional genetic disorder. http://purl.obolibrary.org/obo/OGMS_0000037 abnormal homeostasis http://purl.obolibrary.org/obo/OGMS_0000032 homeostasis Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment. http://purl.obolibrary.org/obo/OGMS_0000038 normal homeostasis http://purl.obolibrary.org/obo/OGMS_0000032 homeostasis Homeostasis of a type that is not clinically abnormal. http://purl.obolibrary.org/obo/OGMS_0000039 configuration http://purl.obolibrary.org/obo/BFO_0000019 quality A quality which is an spatial arrangement or distribution of a(n) independent continuant(s) across a Three Dimensional Region. http://purl.obolibrary.org/obo/OGMS_0000040 pathological physical configuration http://purl.obolibrary.org/obo/OGMS_0000039 configuration A configuration which deviates in some way from a canonical configuration for a particular organism. http://purl.obolibrary.org/obo/OGMS_0000046 epigenetic disorder http://purl.obolibrary.org/obo/OGMS_0000045 disorder A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence. http://purl.obolibrary.org/obo/OGMS_0000047 genetic disorder http://purl.obolibrary.org/obo/OGMS_0000045 disorder A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome. http://purl.obolibrary.org/obo/OGMS_0000050 acquired genetic disorder http://purl.obolibrary.org/obo/OGMS_0000047 genetic disorder A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder. http://purl.obolibrary.org/obo/OGMS_0000051 constitutional genetic disorder http://purl.obolibrary.org/obo/OGMS_0000047 genetic disorder A genetic disorder inherited during conception that is part of all cells in the organism. http://purl.obolibrary.org/obo/OGMS_0000055 clinical history taking http://purl.obolibrary.org/obo/OGMS_0000108 health care process assay A health care process in which a clinician elicits a description of previous sign and symptoms of disease from a patient or from a third party who is reporting on behalf of the patient. http://purl.obolibrary.org/obo/OGMS_0000056 clinical laboratory test http://purl.obolibrary.org/obo/OGMS_0000108 health care process assay A measurement assay that has as input a patient-derived specimen and as output a data item that is about a quality of the specimen. http://purl.obolibrary.org/obo/OGMS_0000057 physical examination http://purl.obolibrary.org/obo/OGMS_0000108 health care process assay A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation. http://purl.obolibrary.org/obo/OGMS_0000059 etiological process http://purl.obolibrary.org/obo/BFO_0000015 process A process in an organism that leads to a subsequent disorder. http://purl.obolibrary.org/obo/OGMS_0000064 chronic disease course http://purl.obolibrary.org/obo/OGMS_0000063 disease course A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range. http://purl.obolibrary.org/obo/OGMS_0000065 progressive disease course http://purl.obolibrary.org/obo/OGMS_0000063 disease course A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis. http://purl.obolibrary.org/obo/OGMS_0000066 transient disease course http://purl.obolibrary.org/obo/OGMS_0000063 disease course A disease course that terminates in a return to normal homeostasis. http://purl.obolibrary.org/obo/OGMS_0000074 normal value http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population. http://purl.obolibrary.org/obo/OGMS_0000077 pathological formation http://purl.obolibrary.org/obo/BFO_0000040 material entity TODO: Define, relate to disorder, and place in the OGMS hierarchy. http://purl.obolibrary.org/obo/OGMS_0000078 pathological anatomical structure http://purl.obolibrary.org/obo/BFO_0000040 material entity An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs. http://purl.obolibrary.org/obo/OGMS_0000079 portion of pathological body substance http://purl.obolibrary.org/obo/BFO_0000040 material entity TODO: Define, relate to disorder, and place in the OGMS hierarchy. http://purl.obolibrary.org/obo/OGMS_0000080 pathological transformation http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process A pathological bodily process in which a canonical anatomical structure becomes a pathological anatomical structure. http://purl.obolibrary.org/obo/OGMS_0000081 pathological derivation http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process A pathological bodily process in which matter is reorganized in such a way as to give rise to new pathological formations which take the place of entities existing earlier. http://purl.obolibrary.org/obo/OGMS_0000082 pathological invasion http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process TODO: Define. http://purl.obolibrary.org/obo/OGMS_0000083 physical examination finding http://purl.obolibrary.org/obo/OGMS_0000014 clinical finding TODO: Define. http://purl.obolibrary.org/obo/OGMS_0000084 organism population http://purl.obolibrary.org/obo/BFO_0000040 material entity An aggregate of organisms of the same type. http://purl.obolibrary.org/obo/OGMS_0000085 pain http://purl.obolibrary.org/obo/OGMS_0000020 symptom A bodily process in an organism S involving two integrated levels: (a) activation of the nociceptive system and associated emotion generating brain components of S, and (b) a simultaneous aversive sensory and emotional experience on the part of S, where (b) is phenomenologically similar to the sort of aversive experience involved in pain with concordant tissue damage. http://purl.obolibrary.org/obo/OGMS_0000086 syndrome http://purl.obolibrary.org/obo/BFO_0000019 quality A pattern of signs and symptoms that typically co-occur. http://purl.obolibrary.org/obo/OGMS_0000088 patient symptom report http://purl.obolibrary.org/obo/IAO_0000030 information content entity A communication from a patient about something they perceive as being abnormal about their body or life. http://purl.obolibrary.org/obo/OGMS_0000091 convalescence http://purl.obolibrary.org/obo/BFO_0000015 process A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. http://purl.obolibrary.org/obo/OGMS_0000092 life course http://purl.obolibrary.org/obo/BFO_0000015 process A process which has as parts all the processes in which a given organism is participant. http://purl.obolibrary.org/obo/OGMS_0000093 prognosis http://purl.obolibrary.org/obo/IAO_0000027 data item A hypothesis about some future part of a disease course. http://purl.obolibrary.org/obo/OGMS_0000094 acute disease course http://purl.obolibrary.org/obo/OGMS_0000063 disease course A disease course with an acute onset http://purl.obolibrary.org/obo/OGMS_0000095 inflammatory process http://purl.obolibrary.org/obo/OGMS_0000060 bodily process A bodily process caused by some disorder that results in recruitment of leukocytes into a localized tissue site, typically causing localized pain and swelling. http://purl.obolibrary.org/obo/OGMS_0000096 health care process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient http://purl.obolibrary.org/obo/OGMS_0000098 hospitalization http://purl.obolibrary.org/obo/OGMS_0000096 health care process TODO http://purl.obolibrary.org/obo/OGMS_0000099 outpatient encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter TODO http://purl.obolibrary.org/obo/OGMS_0000100 inpatient encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter A health care encounter involving a patient who has been admitted to a health care facility and remains in a hospital facility for at least one night. http://purl.obolibrary.org/obo/OGMS_0000101 emergency department encounter http://purl.obolibrary.org/obo/OGMS_0000097 health care encounter A health care encounter in which care is provided for undifferentiated and unscheduled patients with illnesses or injuries requiring immediate medical attention. http://purl.obolibrary.org/obo/OGMS_0000102 injury http://purl.obolibrary.org/obo/OGMS_0000045 disorder A disorder that involves some structural damage that is immediately caused by a catastrophic external force. http://purl.obolibrary.org/obo/OGMS_0000103 disease prophylaxis http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process whose completion is hypothesized by a health care provider to reduce the risk of developing a disorder or the signs and symptoms of a disorder. http://purl.obolibrary.org/obo/OGMS_0000126 congenital infection http://purl.obolibrary.org/obo/OGMS_0000089 congenital disorder A congenital disorder arising as a result of an infectious process http://purl.obolibrary.org/obo/OGMS_0000127 drug induced congenital malformation http://purl.obolibrary.org/obo/OGMS_0000089 congenital disorder A congenital disorder arising as a result of a drug exposure causing an anatomical abnormality http://purl.obolibrary.org/obo/OGMS_0000128 congenital process http://purl.obolibrary.org/obo/OGMS_0000061 pathological bodily process A pathological bodily process that occurs in the fetus during fetal development http://purl.obolibrary.org/obo/OGMS_0000109 health care process biomaterial transformation http://purl.obolibrary.org/obo/OGMS_0000096 health care process A health care process which results in physical changes in a specified input material http://purl.obolibrary.org/obo/IDO_0000504 infectious disorder http://purl.obolibrary.org/obo/OGMS_0000045 disorder An infection that is clinically abnormal. http://purl.obolibrary.org/obo/IDO_0000630 hospital-acquired infection http://purl.obolibrary.org/obo/IDO_0000586 infection An infection resulting from a transmission process that unfolds in a hospital. http://purl.obolibrary.org/obo/OGMS_0000020 symptom http://purl.obolibrary.org/obo/BFO_0000015 process A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant. http://purl.obolibrary.org/obo/OGMS_0000045 disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item The representation of a conclusion of a diagnostic process. http://purl.obolibrary.org/obo/OGMS_0000111 prophylactic treatment http://purl.obolibrary.org/obo/OGMS_0000090 treatment A treatment whose completion is hypothesized by a health care provider to prevent the signs and symptoms of a disorder or pathological process. http://purl.obolibrary.org/obo/IAO_8000001 base ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies. http://purl.obolibrary.org/obo/IAO_8000003 main release ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is intended to be the primary release product and the one consumed by the majority of tools. http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module. http://purl.obolibrary.org/obo/IAO_8000007 curation subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation. http://purl.obolibrary.org/obo/IAO_8000008 analysis subset ontology module http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module An ontology module that is intended for usage in analysis or discovery applications. http://purl.obolibrary.org/obo/IAO_8000013 reasoned ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available. http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module http://purl.obolibrary.org/obo/IAO_8000000 ontology module An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV. http://purl.obolibrary.org/obo/IAO_8000015 template generated ontology module http://purl.obolibrary.org/obo/IAO_8000014 generated ontology module An ontology module that is automatically generated from a template specification and fillers for slots in that template. http://purl.obolibrary.org/obo/IAO_8000018 obo basic subset ontology module http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports http://purl.obolibrary.org/obo/OGMS_0000148 medication role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by some material entity which can be delivered/administrated into some organism and the role is realized during a clinical treatment process aiming to treat symptoms, signs or diagnosed disease. http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure http://purl.obolibrary.org/obo/OGMS_0000090 treatment A treatment whose completion is hypothesized by a health care provider to eliminate a disorder or to alleviate the signs and symptoms of a disorder or pathological process. http://purl.obolibrary.org/obo/OGMS_0000113 chemotherapy procedure http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure A therapeutic procedure that uses synthetic or naturally-occurring chemicals http://purl.obolibrary.org/obo/OGMS_0000114 immunotherapy procedure http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure A therapeutic procedure that uses immune system derived entities. http://purl.obolibrary.org/obo/OGMS_0000115 physical therapy procedure http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure A therapeutic procedure that uses physical conditioning http://purl.obolibrary.org/obo/OGMS_0000116 radiation therapy procedure http://purl.obolibrary.org/obo/OGMS_0000112 therapeutic procedure A therapeutic procedure that uses radiation. http://purl.obolibrary.org/obo/OGMS_0000117 asymptomatic http://purl.obolibrary.org/obo/OBI_0000278 disease stage A disease stage characterized by the lack of symptoms associated with a given disease http://purl.obolibrary.org/obo/OGMS_0000118 onset http://purl.obolibrary.org/obo/OBI_0000278 disease stage A disease stage that marks the beginning of a disease http://purl.obolibrary.org/obo/OGMS_0000119 acute onset http://purl.obolibrary.org/obo/OGMS_0000118 onset A disease stage with a rapid unfolding of signs and symptoms http://purl.obolibrary.org/obo/OGMS_0000120 complete remission http://purl.obolibrary.org/obo/OGMS_0000106 remission A remission which is characterized by a prolonged lack of all manifestations of a disease http://purl.obolibrary.org/obo/OGMS_0000121 partial remission http://purl.obolibrary.org/obo/OGMS_0000106 remission A remission which is characterized by a prolonged lack of some manifestations of a disease http://purl.obolibrary.org/obo/OGMS_0000122 recovered from disease http://purl.obolibrary.org/obo/BFO_0000019 quality A quality in which complete clearance of the disorder is attained; however, physiological 'memory' may persist http://purl.obolibrary.org/obo/OGMS_0000123 clinical data item http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is about a patient and is the specified output of a health care process assay or diagnostic process http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region temporal instant. http://purl.obolibrary.org/obo/IAO_8000000 ontology module http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part ontology file http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000006 subset ontology module http://purl.obolibrary.org/obo/OGMS_0000134 cancer progression stage http://purl.obolibrary.org/obo/OGMS_0000133 progression stage http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/OGMS_0000067 _undefined primitive term http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000182 history http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/OGMS_0000060 bodily process http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/OGMS_0000032 homeostasis http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000024 fiat object part http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000027 object aggregate http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000142 one-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000146 two-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000147 zero-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000029 site http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/OGMS_0000133 progression stage http://purl.obolibrary.org/obo/OBI_0000278 disease stage http://purl.obolibrary.org/obo/OGMS_0000069 clinically abnormal http://purl.obolibrary.org/obo/OGMS_0000067 _undefined primitive term http://purl.obolibrary.org/obo/OGMS_0000070 physical basis http://purl.obolibrary.org/obo/OGMS_0000067 _undefined primitive term http://purl.obolibrary.org/obo/OGMS_0000071 realization http://purl.obolibrary.org/obo/OGMS_0000067 _undefined primitive term http://purl.obolibrary.org/obo/IAO_8000016 taxonomic bridge ontology module http://purl.obolibrary.org/obo/IAO_8000004 bridge ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/IAO_8000017 ontology module subsetted by expressivity http://purl.obolibrary.org/obo/IAO_8000020 EL++ ontology module http://purl.obolibrary.org/obo/IAO_8000019 ontology module subsetted by OWL profile http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/OGMS_0000024 obsolete_sign