Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/IAO_0000009 data item label http://purl.obolibrary.org/obo/IAO_0000030 information content entity datum label An information content entity that is part of some data item and is used to partially define the denotation of that data item. http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity data An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method that reliably tends to produce (approximately) truthful statements. http://purl.obolibrary.org/obo/IAO_0000109 measurement data item http://purl.obolibrary.org/obo/IAO_0000027 data item measurement datum A data item that is a recording of the output of an assay. http://purl.obolibrary.org/obo/IAO_0000300 textual entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity text A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc. http://purl.obolibrary.org/obo/IAO_0000577 CRID http://purl.obolibrary.org/obo/IAO_0000028 symbol centrally registered identifier A symbol that is sufficient to look up information about the corresponding entity from its CRID (centrally registered identifier) registry. http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier http://purl.obolibrary.org/obo/IAO_0000030 information content entity Centrally Registered IDentifier (CRID) An information content entity that consists of a CRID symbol and additional information about which CRID registry it belongs. http://purl.obolibrary.org/obo/IAO_0000579 CRID registry http://purl.obolibrary.org/obo/IAO_0000100 data set centrally registered identifier registry A data set that consists of CRIDs (centrally registered identifier) and additional information about their corresponding entities, that were recorded in the dataset through an assigning a centrally registered identifier process. http://purl.obolibrary.org/obo/OBI_0000070 assay http://purl.obolibrary.org/obo/OBI_0000011 planned process scientific observation A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. http://purl.obolibrary.org/obo/OBI_0000086 reagent role http://purl.obolibrary.org/obo/BFO_0000023 role reagent A role inhering in a biological or chemical entity that is intended to be applied in a scientific technique to participate (or have molecular components that participate) in a chemical reaction that facilitates the generation of data about some entity distinct from the bearer, or the generation of some specified material output distinct from the bearer. http://purl.obolibrary.org/obo/OBI_0000093 patient role http://purl.obolibrary.org/obo/BFO_0000023 role patient a role which inheres in a person and is realized by the process of being under the care of a physician or health care provider http://purl.obolibrary.org/obo/OBI_0000094 material processing http://purl.obolibrary.org/obo/OBI_0000011 planned process material transformation A planned process which results in physical changes in a specified input material http://purl.obolibrary.org/obo/OBI_0000102 responsible party role http://purl.obolibrary.org/obo/OBI_0000202 investigation agent role responsible party a study personnel role played by a party who is accountable for the execution of a study component and can make decisions about the conduct of the study http://purl.obolibrary.org/obo/OBI_0000103 principal investigator role http://purl.obolibrary.org/obo/OBI_0000102 responsible party role principal investigator a responsible party role played by a person responsible for the overall conduct of a study http://purl.obolibrary.org/obo/OBI_0000202 investigation agent role http://purl.obolibrary.org/obo/BFO_0000023 role investigator A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing. http://purl.obolibrary.org/obo/OBI_0000423 extract http://purl.obolibrary.org/obo/OBI_0000047 processed material extracted material an extract is a material entity which results from an extraction process http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification artifact creation objective an objective specifiction that creates an specific output object from input materials. http://purl.obolibrary.org/obo/OBI_0000674 center value http://purl.obolibrary.org/obo/IAO_0000027 data item median A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data. http://purl.obolibrary.org/obo/OBI_0000679 average value http://purl.obolibrary.org/obo/IAO_0000027 data item arithmetic mean A data item that is produced as the output of an averaging data transformation and represents the average value of the input data. http://purl.obolibrary.org/obo/OBI_0000747 material sample http://purl.obolibrary.org/obo/OBI_0100051 specimen sample population A material entity that has the material sample role http://purl.obolibrary.org/obo/OBI_0000750 study design independent variable http://purl.obolibrary.org/obo/IAO_0000033 directive information entity independent variable a directive information entity that is part of a study design. Independent variables are entities whose values are selected to determine its relationship to an observed phenomenon (the dependent variable). In such an experiment, an attempt is made to find evidence that the values of the independent variable determine the values of the dependent variable (that which is being measured). The independent variable can be changed as required, and its values do not represent a problem requiring explanation in an analysis, but are taken simply as given. The dependent variable on the other hand, usually cannot be directly controlled http://purl.obolibrary.org/obo/OBI_0000968 device http://purl.obolibrary.org/obo/OBI_0000047 processed material instrument A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. http://purl.obolibrary.org/obo/OBI_0001143 labeled nucleic acid extract http://purl.obolibrary.org/obo/OBI_0000924 labeled specimen labeled extract a labeled specimen that is the output of a labeling process and has grain labeled nucleic acid for detection of the nucleic acid in future experiments. http://purl.obolibrary.org/obo/OBI_0001755 selection criterion http://purl.obolibrary.org/obo/IAO_0000033 directive information entity selection rule A directive information entity which defines and states a principle of standard by which selection process may take place. http://purl.obolibrary.org/obo/OBI_0001928 selection http://purl.obolibrary.org/obo/OBI_0000011 planned process selection process A planned process which results in the creation of group of entity from a larger group by the application of predefined criteria. http://purl.obolibrary.org/obo/OBI_0100016 blood plasma specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen plasma a material entity which corresponds to the liquid component of blood, in which the blood cells are suspended. http://purl.obolibrary.org/obo/OBI_0100060 cultured cell population http://purl.obolibrary.org/obo/OBI_0000047 processed material cell culture sample A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history. http://purl.obolibrary.org/obo/OBI_0100067 bronchial alveolar lavage http://purl.obolibrary.org/obo/OBI_0100051 specimen BAL Group of biomaterials present in the bronchial aveolar space of an organism which are collected through lavage including the reagents used to for the lavage process, organisms, cells, and cellular secretions present in the bronchial aveolar space. http://purl.obolibrary.org/obo/OBI_0200000 data transformation http://purl.obolibrary.org/obo/OBI_0000011 planned process data processing A planned process that produces output data from input data. http://purl.obolibrary.org/obo/OBI_0200125 data combination http://purl.obolibrary.org/obo/OBI_0200000 data transformation data pooling A data transformation in which individual input data elements and values are merged together into a output set of data elements and values. http://purl.obolibrary.org/obo/OBI_0200189 merging objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective combining objective A merging objective is a data transformation objective in which the data transformation has the aim of performing a union of two or more sets. http://purl.obolibrary.org/obo/OBI_0500000 study design http://purl.obolibrary.org/obo/IAO_0000104 plan specification experimental design A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. http://purl.obolibrary.org/obo/OBI_0600010 material acquisition http://purl.obolibrary.org/obo/OBI_0600008 acquisition material procurement An acquisition in which possession of a material entity is gained. http://purl.obolibrary.org/obo/OBI_0600013 information acquisition http://purl.obolibrary.org/obo/OBI_0600008 acquisition data collection An acquisition in which possession of information is gained. http://purl.obolibrary.org/obo/OBI_0600038 addition of molecular label http://purl.obolibrary.org/obo/OBI_0000094 material processing labeling a material processing technique intended to add a molecular label to some input material entity, to allow detection of the molecular target of this label in a detection of molecular label assay http://purl.obolibrary.org/obo/OBI_1000049 whole mount tissue http://purl.obolibrary.org/obo/OBI_0001479 tissue specimen whole mount sample A whole organism preparation resulting from a histological preparation known as whole mount preparation where the whole specimen is mounted or spread on the microscope (glass) slide http://purl.obolibrary.org/obo/OBI_1110087 donor http://purl.obolibrary.org/obo/BFO_0000023 role donor role A role which inheres in an organism or part thereof from which any part including cell, organ or tissue is removed with the intention that the donated part will be placed into another organism and/or cultured in vitro. http://purl.obolibrary.org/obo/REO_0000171 molecular label role http://purl.obolibrary.org/obo/BFO_0000023 role molecular tracer role a reagent role inhering in a molecular entity intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay. http://purl.obolibrary.org/obo/REO_0000280 molecular label http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity molecular tracer a molecular reagent intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay http://purl.obolibrary.org/obo/OMIABIS_0000002 settlement part of address of sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000029 settlement part of address Sample Collection/Study contact city The part of a sample collection or study contact's adress denoting a settlement. http://purl.obolibrary.org/obo/OMIABIS_0000003 biobank proper name http://purl.obolibrary.org/obo/IAO_0020000 proper name Name of biobank An identifier in natural language referring to a biobank. http://purl.obolibrary.org/obo/OMIABIS_0000005 biobank idenfier with ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/OMIABIS_0000003 biobank proper name Biobank ID A biobank identifier that has an ISO 3166-1 alpha-2 code as a part. http://purl.obolibrary.org/obo/OMIABIS_0000007 ISO 3166-1 alpha-2 code for sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000004 ISO 3166-1 alpha-2 code Sample Collection/Study contact country The ISO 3166-1 alpha-2 code that is part of the sample collection or study contact's postal address. http://purl.obolibrary.org/obo/OMIABIS_0000010 biobank organization http://purl.obolibrary.org/obo/OBI_0000245 organization biobank juristic person An organization bearing legal personality that ownes or adminstrates a biobank. http://purl.obolibrary.org/obo/OMIABIS_0000014 name of biobank contact person http://purl.obolibrary.org/obo/IAO_0020015 personal name Biobank contact person A personal name that designates the person acting as contact for a sample collection or a study. http://purl.obolibrary.org/obo/OMIABIS_0000015 email address of biobank contact person http://purl.obolibrary.org/obo/IAO_0000429 email address Biobank contact email An email address for the purpose of contacting a biobank contact person. http://purl.obolibrary.org/obo/OMIABIS_0000018 department of biobank contact http://purl.obolibrary.org/obo/OMIABIS_0000017 department Biobank contact department A department that has a contact person for a biobank as an organizational member. http://purl.obolibrary.org/obo/OMIABIS_0000019 unique resource locator http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier uri A CRID that constitutes a reference to an Internet resource. http://purl.obolibrary.org/obo/OMIABIS_0000020 biobank's unique resource locator http://purl.obolibrary.org/obo/OMIABIS_0000019 unique resource locator Biobank URL A unique resource locator referring to the homepage of a biobank. http://purl.obolibrary.org/obo/OMIABIS_0000022 telephone number of biobank contact http://purl.obolibrary.org/obo/OMIABIS_0000021 telephone number Biobank contact phone A telephone number that is contact information about a biobank contact person. http://purl.obolibrary.org/obo/OMIABIS_0000025 telephone number of sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000021 telephone number Sample Collection/Study contact phone A telephone number that is contact information about a sample collection or study contact person. http://purl.obolibrary.org/obo/OMIABIS_0000027 postal code of biobank contact http://purl.obolibrary.org/obo/OMIABIS_0000026 postal code Biobank contact ZIP The postal code that is part of the postal address of the biobank contact person. http://purl.obolibrary.org/obo/OMIABIS_0000028 ISO 3166-1 alpha-2 code for biobank contact person http://purl.obolibrary.org/obo/OMIABIS_0000004 ISO 3166-1 alpha-2 code Biobank country code The ISO 3166-1 alpha-2 code that is part of the biobank contact person's postal address. http://purl.obolibrary.org/obo/OMIABIS_0000030 settlement part of address biobank contact http://purl.obolibrary.org/obo/OMIABIS_0000029 settlement part of address Biobank contact city The part of a biobank contact's adress denoting a settlement. http://purl.obolibrary.org/obo/OMIABIS_0000032 intra-settlement specification part of address of biobank contact http://purl.obolibrary.org/obo/OMIABIS_0000031 intra-settlement specification part of address Biobank contact address An intra-settlement specification part of address that is part of a biobank contact's postal address. http://purl.obolibrary.org/obo/OMIABIS_0000035 email address of sample collection or study contact http://purl.obolibrary.org/obo/IAO_0000429 email address Sample Collection/Study contact email An email address for the purpose of contacting a sample collection or study contact person. http://purl.obolibrary.org/obo/OMIABIS_0000036 sample collection or study aim description http://purl.obolibrary.org/obo/IAO_0000300 textual entity Sample collection or study description A textual entity describing a study aim or a sample collection. http://purl.obolibrary.org/obo/OMIABIS_0000037 study proper name http://purl.obolibrary.org/obo/IAO_0020000 proper name Study name A proper name that designates a study. http://purl.obolibrary.org/obo/OMIABIS_0000038 name of sample collection responsible or principal investigator http://purl.obolibrary.org/obo/IAO_0020015 personal name Sample Collection Responsible / Principal Investigator A personal name that designates the human being responsible for a sample collection or the human being being the principal investigator in a study. http://purl.obolibrary.org/obo/OMIABIS_0000039 name of sample collection or study contact person http://purl.obolibrary.org/obo/IAO_0020015 personal name Sample Collection/Study contact person A personal name that designates the person acting as contact for a sample collection or a study. http://purl.obolibrary.org/obo/OMIABIS_0000040 department of sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000017 department Sample Collection/Study contact department A department that has a contact person for a sample collection or a study as an organizational member. http://purl.obolibrary.org/obo/OMIABIS_0000044 postal code for sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000026 postal code Sample Collection/Study contact ZIP Postal code that is part of the address of a human being serving as sample collection or study contact. http://purl.obolibrary.org/obo/OMIABIS_0000045 biobank location ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/OMIABIS_0000004 ISO 3166-1 alpha-2 code Biobank country code An ISO 3166-1 alpha-2 code that designates the country a biobank is located in. http://purl.obolibrary.org/obo/OMIABIS_0000912 addition of molecular label http://purl.obolibrary.org/obo/OBI_0000094 material processing labeling a material processing technique intended to add a molecular label to some input material entity, to allow detection of the molecular target of this label in a detection of molecular label assay http://purl.obolibrary.org/obo/OMIABIS_0001002 patient registry data http://purl.obolibrary.org/obo/IAO_0000100 data set patient register data A data set of collected secondary data related to patients with a specific diagnosis, condition, or procedure and plays an important role in post marketing surveillance of pharmaceuticals. http://purl.obolibrary.org/obo/OMIABIS_0001009 primary diagnosis http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis main diagnosis A diagnosis that is the main reason for the inducement of medical care. http://purl.obolibrary.org/obo/OMIABIS_0001029 age interval information for sampled donors http://purl.obolibrary.org/obo/OMIABIS_0001000 age interval information sampled group age interval Age interval information that is age information of specimen donors. http://purl.obolibrary.org/obo/OMIABIS_0001039 date of specimen collection http://purl.obolibrary.org/obo/IAO_0000027 data item date of specimen preparation A data item that indicates the time when the collection of a specimen occurred. http://purl.obolibrary.org/obo/OMIABIS_0001080 sample handling http://purl.obolibrary.org/obo/OBI_0000011 planned process specimen handling A planned process of preparing and submitting specimens to storage. http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity polymer A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. http://purl.obolibrary.org/obo/GEO_000000396 sovereign state http://purl.obolibrary.org/obo/GEO_000000400 governmental organization nation state A governmental organization with a defined territory on which it exercises internal and external sovereignty, a permanent population, a government, and the capacity to enter into relations with other sovereign states. http://purl.obolibrary.org/obo/OMIABIS_0001008 comorbidity http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis secondary infection, nosocomial infection A diagnosis that is the outcome of a diagnostic process targeting a second or additional health problem. http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001]) http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/BFO_0000015 process b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) http://purl.obolibrary.org/obo/BFO_0000145 relational quality http://purl.obolibrary.org/obo/BFO_0000019 quality b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001]) http://purl.obolibrary.org/obo/GAZ_00000448 geographical location http://purl.obolibrary.org/obo/BFO_0000029 site A reference to a place on the Earth, by its name or by its geographical location. http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label http://purl.obolibrary.org/obo/IAO_0000009 data item label A data item label that denotes a unit of measure. http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity a directive information entity that describes an intended process endpoint. http://purl.obolibrary.org/obo/IAO_0000006 narrative object http://purl.obolibrary.org/obo/IAO_0000030 information content entity A narrative object is an information content entity that is a set of propositions. http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity a directive information entity that describes an action the bearer will take http://purl.obolibrary.org/obo/IAO_0000015 information carrier http://purl.obolibrary.org/obo/BFO_0000019 quality A quality of an information bearer that imparts the information content http://purl.obolibrary.org/obo/IAO_0000028 symbol http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is a mark or character used as a conventional representation of another entity. http://purl.obolibrary.org/obo/IAO_0000029 numeral http://purl.obolibrary.org/obo/IAO_0000028 symbol A symbol that denotes a number. http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant an information content entity is an entity that is generically dependent on some material entity and stands in relation of aboutness to some entity http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement data item a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label. http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. http://purl.obolibrary.org/obo/IAO_0000064 algorithm http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which describes inputs, output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. http://purl.obolibrary.org/obo/IAO_0000078 curation status specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000088 report http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity assembled by an author for the purpose of providing information for an audience, and that is meant to provide an accurate account of something that happened. http://purl.obolibrary.org/obo/IAO_0000098 data format specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file http://purl.obolibrary.org/obo/IAO_0000100 data set http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets. http://purl.obolibrary.org/obo/IAO_0000101 image http://purl.obolibrary.org/obo/IAO_0000308 figure An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface. http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part http://purl.obolibrary.org/obo/IAO_0000027 data item data about an ontology part is a data item about a part of an ontology, for example a term http://purl.obolibrary.org/obo/IAO_0000104 plan specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity a directive information entity that, when concretized, is realized in a process in which the bearer tries to achieve the objectives, in part by taking the actions specified. http://purl.obolibrary.org/obo/IAO_0000140 setting datum http://purl.obolibrary.org/obo/IAO_0000027 data item A settings datum is a datum that denotes some configuration of an instrument. http://purl.obolibrary.org/obo/IAO_0000144 conclusion textual entity http://purl.obolibrary.org/obo/OBI_0001909 conclusion based on data A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers. http://purl.obolibrary.org/obo/IAO_0000178 material information bearer http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity in which a concretization of an information content entity inheres. http://purl.obolibrary.org/obo/IAO_0000185 photograph http://purl.obolibrary.org/obo/IAO_0000101 image A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc. http://purl.obolibrary.org/obo/IAO_0000186 photographic print http://purl.obolibrary.org/obo/IAO_0000178 material information bearer A photographic print is a material entity upon which a photograph generically depends. http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000308 figure http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something. http://purl.obolibrary.org/obo/IAO_0000310 document http://purl.obolibrary.org/obo/IAO_0000030 information content entity A collection of information content entities intended to be understood together as a whole http://purl.obolibrary.org/obo/IAO_0000408 length measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measurement of length quality http://purl.obolibrary.org/obo/IAO_0000414 mass measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement data item A scalar measurement datum that is the result of measurement of mass quality http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum http://purl.obolibrary.org/obo/IAO_0000032 scalar measurement datum A scalar measurement datum that is the result of measuring a temporal interval http://purl.obolibrary.org/obo/IAO_0000422 postal address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is used as directive to deliver something to a person, or organization http://purl.obolibrary.org/obo/IAO_0000572 documenting http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process in which input information is used to create or add to a report http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process A processual entity that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000015 biological feature identification objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification Biological_feature_identification_objective is an objective role carried out by the proposition defining the aim of a study designed to examine or characterize a particular biological feature. http://purl.obolibrary.org/obo/OBI_0000047 processed material http://purl.obolibrary.org/obo/BFO_0000040 material entity Is a material entity that is created or changed during material processing. http://purl.obolibrary.org/obo/OBI_0000066 investigation http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). http://purl.obolibrary.org/obo/OBI_0000067 evaluant role http://purl.obolibrary.org/obo/BFO_0000023 role a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role http://purl.obolibrary.org/obo/OBI_0000079 culture medium http://purl.obolibrary.org/obo/OBI_0000047 processed material a processed material that provides the needed nourishment for microorganisms or cells grown in vitro. http://purl.obolibrary.org/obo/OBI_0000097 participant under investigation role http://purl.obolibrary.org/obo/BFO_0000023 role A role that is realized through the execution of a study design in which the bearer of the role participates and in which data about that bearer is collected. http://purl.obolibrary.org/obo/OBI_0000112 specimen role http://purl.obolibrary.org/obo/BFO_0000023 role a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation http://purl.obolibrary.org/obo/OBI_0000151 filter paper http://purl.obolibrary.org/obo/OBI_0000932 material separation device a device manufacture with the intent to provide a porous unsized paper used for filtering. http://purl.obolibrary.org/obo/OBI_0000245 organization http://purl.obolibrary.org/obo/BFO_0000040 material entity An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. http://purl.obolibrary.org/obo/OBI_0000257 DNA extraction http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction A DNA extraction is a nucleic acid extraction where the desired output material is DNA. http://purl.obolibrary.org/obo/OBI_0000268 organism feature identification objective http://purl.obolibrary.org/obo/OBI_0000015 biological feature identification objective Organism_feature_identification_objective is a biological_feature_identification_objective role describing a study designed to examine or characterize a biological feature monitored at the level of the organism, e.g. height, weight, stage of development, stage of life cycle. http://purl.obolibrary.org/obo/OBI_0000272 protocol http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process. http://purl.obolibrary.org/obo/OBI_0000274 adding a material entity into a target http://purl.obolibrary.org/obo/OBI_0000652 material combination is a process with the objective to place a material entity bearing the 'material to be added role' into a material bearing the 'target of material addition role'. http://purl.obolibrary.org/obo/OBI_0000319 material to be added role http://purl.obolibrary.org/obo/BFO_0000023 role material to be added role is a protocol participant role realized by a material which is added into a material bearing the target of material addition role in a material addition process http://purl.obolibrary.org/obo/OBI_0000338 drawing a conclusion based on data http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion http://purl.obolibrary.org/obo/OBI_0000339 planning http://purl.obolibrary.org/obo/BFO_0000015 process a process of creating or modifying a plan specification http://purl.obolibrary.org/obo/OBI_0000341 histological sample preparation http://purl.obolibrary.org/obo/OBI_0000659 specimen collection histological sample preparation is the preparation of an input tissue via slicing and labeling to make tissue microstructure of interest visible in a future histology assay http://purl.obolibrary.org/obo/OBI_0000355 hypothesis driven investigation http://purl.obolibrary.org/obo/OBI_0000066 investigation is an investigation with the goal to test one or more hypothesis http://purl.obolibrary.org/obo/OBI_0000356 hypothesis generating investigation http://purl.obolibrary.org/obo/OBI_0000066 investigation is an investigation in which data is generated and analyzed with the purpose of generating new hypothesis http://purl.obolibrary.org/obo/OBI_0000370 contain function http://purl.obolibrary.org/obo/BFO_0000034 function A contain function is a function to constrain a material entities location in space http://purl.obolibrary.org/obo/OBI_0000371 heat function http://purl.obolibrary.org/obo/BFO_0000034 function A heat function is a function that increases the internal kinetic energy of a material http://purl.obolibrary.org/obo/OBI_0000372 material separation function http://purl.obolibrary.org/obo/BFO_0000034 function A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality. http://purl.obolibrary.org/obo/OBI_0000375 freeze function http://purl.obolibrary.org/obo/BFO_0000034 function A freeze function is a function to decrease the internal kinetic energy of a material below the freezing point of that type of material. http://purl.obolibrary.org/obo/OBI_0000378 filter function http://purl.obolibrary.org/obo/OBI_0000372 material separation function A filter function is a function to prevent the flow of certain entities based on a quality or qualities of the entity while allowing entities which have different qualities to pass through http://purl.obolibrary.org/obo/OBI_0000379 mechanical function http://purl.obolibrary.org/obo/BFO_0000034 function A mechanical function is a function that is realised via mechanical work (through an certain amount of energy transferred by some force). http://purl.obolibrary.org/obo/OBI_0000387 cool function http://purl.obolibrary.org/obo/BFO_0000034 function A cool function is a function to decrease the internal kinetic energy of a material below the initial kinetic energy of that type of material. http://purl.obolibrary.org/obo/OBI_0000401 environment control function http://purl.obolibrary.org/obo/BFO_0000034 function An environmental control function is a function that regulates a contained environment within specified parameter ranges. For example the control of light exposure, humidity and temperature. http://purl.obolibrary.org/obo/OBI_0000407 viral RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction The extraction of RNA from an input material that specifically isolates viral RNA http://purl.obolibrary.org/obo/OBI_0000425 averaging objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation. http://purl.obolibrary.org/obo/OBI_0000434 adding material objective http://purl.obolibrary.org/obo/OBI_0000686 material combination objective is the specification of an objective to add a material into a target material. The adding is asymmetric in the sense that the target material largely retains its identity http://purl.obolibrary.org/obo/OBI_0000441 assay objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role) http://purl.obolibrary.org/obo/OBI_0000444 target of material addition role http://purl.obolibrary.org/obo/BFO_0000023 role target of material addition role is a role realized by an entity into which a material is added in a material addition process http://purl.obolibrary.org/obo/OBI_0000453 measure function http://purl.obolibrary.org/obo/BFO_0000034 function Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference. http://purl.obolibrary.org/obo/OBI_0000471 study design execution http://purl.obolibrary.org/obo/OBI_0000011 planned process a planned process that realizes the concretization of a study design http://purl.obolibrary.org/obo/OBI_0000639 material separation objective http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective is an objective to transform a material entity into spatially separated components. http://purl.obolibrary.org/obo/OBI_0000649 data set of features http://purl.obolibrary.org/obo/IAO_0000100 data set A data set that is produced as the output of a descriptive statistical calculation data transformation and consists of producing a data set that represents one or more features of interest about the input data set. http://purl.obolibrary.org/obo/OBI_0000651 urine specimen http://purl.obolibrary.org/obo/OBI_0001479 tissue specimen a portion of urine collected from an organism http://purl.obolibrary.org/obo/OBI_0000652 material combination http://purl.obolibrary.org/obo/OBI_0000094 material processing is a material processing with the objective to combine two or more material entities as input into a single material entity as output. http://purl.obolibrary.org/obo/OBI_0000655 blood specimen http://purl.obolibrary.org/obo/OBI_0001479 tissue specimen a material entity derived from a portion of blood collected from an organism http://purl.obolibrary.org/obo/OBI_0000659 specimen collection http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process with the objective of collecting a specimen. http://purl.obolibrary.org/obo/OBI_0000671 sample from organism http://purl.obolibrary.org/obo/OBI_0001479 tissue specimen a material obtained from an organism in order to be a representative of the whole http://purl.obolibrary.org/obo/OBI_0000678 portioning objective http://purl.obolibrary.org/obo/OBI_0000639 material separation objective A material separation objective aiming to separate material into multiple portions, each of which contains a similar composition of the input material. http://purl.obolibrary.org/obo/OBI_0000680 whole organism preparation http://purl.obolibrary.org/obo/OBI_0100051 specimen A material entity which is the output of a process in which one or more whole organisms are prepared in a way to make it easier to study them, and in which the great majority of organismal parts are maintained http://purl.obolibrary.org/obo/OBI_0000681 separation into different composition objective http://purl.obolibrary.org/obo/OBI_0000639 material separation objective A material separation objective aiming to separate a material entity that has parts of different types, and end with at least one output that is a material with parts of fewer types (modulo impurities). http://purl.obolibrary.org/obo/OBI_0000684 specimen collection objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification A objective specification to obtain a material entity for potential use as an input during an investigation. http://purl.obolibrary.org/obo/OBI_0000686 material combination objective http://purl.obolibrary.org/obo/OBI_0000456 material transformation objective is an objective to obtain an output material that contains several input materials. http://purl.obolibrary.org/obo/OBI_0000740 material sample role http://purl.obolibrary.org/obo/OBI_0000112 specimen role A material sample role is a specimen role borne by a material entity that is the output of a material sampling process. http://purl.obolibrary.org/obo/OBI_0000744 material sampling process http://purl.obolibrary.org/obo/OBI_0000659 specimen collection A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity http://purl.obolibrary.org/obo/OBI_0000806 material maintenance objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification maintains some or all of the qualities of a material over time. http://purl.obolibrary.org/obo/OBI_0000832 measurement device http://purl.obolibrary.org/obo/OBI_0000968 device A device in which a measure function inheres. http://purl.obolibrary.org/obo/OBI_0000834 high molecular weight DNA extract http://purl.obolibrary.org/obo/OBI_0001051 DNA extract The output of an extraction process in which DNA molecules above a molecular weight cutoff are purified in order to exclude DNA from organellas. http://purl.obolibrary.org/obo/OBI_0000838 material maintenance http://purl.obolibrary.org/obo/OBI_0000011 planned process a process with that achieves the objective to maintain some or all of the characteristics of an input material over time http://purl.obolibrary.org/obo/OBI_0000848 polyA RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction A RNA extraction process typically involving the use of poly dT oligomers in which the desired output material is polyA RNA. http://purl.obolibrary.org/obo/OBI_0000849 organellar RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction A RNA extraction process in which the desired output material is RNA in the organelle(s). http://purl.obolibrary.org/obo/OBI_0000855 total RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction A RNA extraction process in which total cellular and organelle RNA are extracted. http://purl.obolibrary.org/obo/OBI_0000859 cytoplasmic RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction A RNA extraction process in which the desired output material is RNA in the cytoplasm. http://purl.obolibrary.org/obo/OBI_0000862 nuclear RNA extract http://purl.obolibrary.org/obo/OBI_0000880 RNA extract A RNA extract that is the output of an extraction process in which RNA molecules found in the nucleus, including mRNA precursors (pre-mRNA), are extracted. http://purl.obolibrary.org/obo/OBI_0000869 polyA RNA extract http://purl.obolibrary.org/obo/OBI_0000880 RNA extract A RNA extract that is the output of an extraction process in which RNA molecules with poly A tail at its 3’ end are purified. http://purl.obolibrary.org/obo/OBI_0000873 pre-mortem specimen http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status a specimen that was taken from a live organism http://purl.obolibrary.org/obo/OBI_0000876 cytoplasmic RNA extract http://purl.obolibrary.org/obo/OBI_0000880 RNA extract A RNA extract that is the output of a RNA extraction process in which RNA molecules found in the cytoplasm are extracted. http://purl.obolibrary.org/obo/OBI_0000880 RNA extract http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract an extract which is the output of an extraction process in which RNA molecules are isolated from a specimen. http://purl.obolibrary.org/obo/OBI_0000888 nuclear RNA extraction http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction A RNA extraction process in which the desired output material is RNA in the nucleus. http://purl.obolibrary.org/obo/OBI_0000895 total RNA extract http://purl.obolibrary.org/obo/OBI_0000880 RNA extract A RNA extract that is the output of an extraction process in which total celluar and organelle RNA molecules are isolated from a specimen. http://purl.obolibrary.org/obo/OBI_0000899 organellar RNA extract http://purl.obolibrary.org/obo/OBI_0000880 RNA extract A RNA extract that is the output of an extraction process in which RNA molecules found in an organelle, e.g., mitochondrion, ER, or chloroplast, excluding the nucleus, are extracted. http://purl.obolibrary.org/obo/OBI_0000902 post mortem specimen http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status a specimen that was taken from a dead organism http://purl.obolibrary.org/obo/OBI_0000908 labeled DNA extract http://purl.obolibrary.org/obo/OBI_0001143 labeled nucleic acid extract a labeled specimen that is the output of a labeling process and has grain labeled DNA to be able to detect DNA in future experiments. http://purl.obolibrary.org/obo/OBI_0000909 cloacal specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen obtained by inserting a swab deeply into the vent of the cloaca of an organism and vigorously swabbing the wall. The swab should be deeply stained with fecal material and is then placed in transport medium. http://purl.obolibrary.org/obo/OBI_0000914 nasopharyngeal aspirate specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A speciemn which derives from nasopharyngeal mucosa after aspiration. http://purl.obolibrary.org/obo/OBI_0000915 freezing storage http://purl.obolibrary.org/obo/OBI_0302893 storage A storage process in temperature that maintenance the frozen status of the stored entities. http://purl.obolibrary.org/obo/OBI_0000917 nasal swab specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen obtained using a cotton swab on a stick, passed up the nostril to obtain a sample of exudate and epithelial debris for microbiological or cellular examination. http://purl.obolibrary.org/obo/OBI_0000921 labeled RNA extract http://purl.obolibrary.org/obo/OBI_0001143 labeled nucleic acid extract a labeled specimen that is the output of a labeling process and has grain labeled RNA to be able to detect RNA in future experiments. http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state A specimen that has been frozen in order to store it. http://purl.obolibrary.org/obo/OBI_0000924 labeled specimen http://purl.obolibrary.org/obo/OBI_0001936 molecular-labeled material A specimen that has been modified in order to be able to detect it in future experiments http://purl.obolibrary.org/obo/OBI_0000927 lyophilization storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input material entity and output freeze dried material for long time storage http://purl.obolibrary.org/obo/OBI_0000932 material separation device http://purl.obolibrary.org/obo/OBI_0000968 device A device with a separation function realized in a planed process http://purl.obolibrary.org/obo/OBI_0000950 paraffin specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a paraffin storage process in which specimen is embedded in paraffin http://purl.obolibrary.org/obo/OBI_0000953 processed specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been intentionally physically modified. http://purl.obolibrary.org/obo/OBI_0000965 lyophilized specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a lyophilization storage process in which specimen is lyophilized for storage. http://purl.obolibrary.org/obo/OBI_0000971 fresh specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a specimen creation process used for an investigation without storage. http://purl.obolibrary.org/obo/OBI_0000977 paraffin storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input organism or anatomical entity and paraffin and output material embedded in paraffin for long term storage http://purl.obolibrary.org/obo/OBI_0000981 agar stab specimen http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state a specimen that is output of a process that cell culture inoculated into agar for long term storage. http://purl.obolibrary.org/obo/OBI_0001003 agar stab storage http://purl.obolibrary.org/obo/OBI_0302893 storage a storage process with input cell culture and agar and output agar stab for long time storage http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract http://purl.obolibrary.org/obo/OBI_0000953 processed specimen An extract that is the output of an extraction process in which nucleic acid molecules are isolated from a specimen. http://purl.obolibrary.org/obo/OBI_0001051 DNA extract http://purl.obolibrary.org/obo/OBI_0001010 nucleic acid extract The output of an extraction process in which DNA molecules are purified in order to exclude DNA from organellas. http://purl.obolibrary.org/obo/OBI_0001293 disease state design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which the pathological condition of a part, organ, or system of an organism is studied. The etiology may be from infection, genetic defect, or environmental stress. http://purl.obolibrary.org/obo/OBI_0001468 cell specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen primarily composed of cells collected from a multicellular organism or a cell culture http://purl.obolibrary.org/obo/OBI_0001472 specimen with known storage state http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen for which it is known whether it has been subjected to storage of a specified type. http://purl.obolibrary.org/obo/OBI_0001479 tissue specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm). http://purl.obolibrary.org/obo/OBI_0001506 specimen with pre- or post-mortem status http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been established to be taken from a live (pre-mortem) or dead (post-mortem) organism. http://purl.obolibrary.org/obo/OBI_0001876 cell culture http://purl.obolibrary.org/obo/OBI_0000047 processed material A material entity comprised of cultured cells and the media in which they are being propagated or stored. http://purl.obolibrary.org/obo/OBI_0001909 conclusion based on data http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is inferred from data. http://purl.obolibrary.org/obo/OBI_0001912 cell freezing medium http://purl.obolibrary.org/obo/OBI_0000047 processed material A processed material that serves as a liquid vehicle for freezing cells for long term quiescent stroage, which contains chemicls needed to sustain cell viability across freeze-thaw cycles. http://purl.obolibrary.org/obo/OBI_0001931 scalar value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that consists of two parts: a numeral and a unit label http://purl.obolibrary.org/obo/OBI_0001933 value specification http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies a value within a classification scheme or on a quantitative scale. http://purl.obolibrary.org/obo/OBI_0001936 molecular-labeled material http://purl.obolibrary.org/obo/OBI_0000047 processed material a material entity that is the specified output of an addition of molecular label process that aims to label some molecular target to allow for its detection in a detection of molecular label assay http://purl.obolibrary.org/obo/OBI_0001952 flash freezing http://purl.obolibrary.org/obo/OBI_0001953 freezing A freezing process by which material entities are quickly frozen by subjecting them to cryogenic temperatures, or in direct contact with Liquid nitrogen at -320.8F or -196°C. http://purl.obolibrary.org/obo/OBI_0001953 freezing http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process in which a material entity has it's temperature lowered to below the freezing point in order to bring it to a state in which it can be maintained at this lower temperature in order to preserve some of its qualities. http://purl.obolibrary.org/obo/OBI_0100017 blood serum specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A material entity which derives from blood and corresponds to blood plasma without fibrinogen or the other clotting factors. http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. http://purl.obolibrary.org/obo/OBI_0100051 specimen http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that has the specimen role. http://purl.obolibrary.org/obo/OBI_0100066 organ section http://purl.obolibrary.org/obo/OBI_0000047 processed material A processed material which derives from an organ and results from a process of dissection or histological sample preparation a portion(formerly an organ section is portion of an organ removed from the context of the organ) http://purl.obolibrary.org/obo/OBI_0200056 moving average http://purl.obolibrary.org/obo/OBI_0200170 averaging data transformation A moving average is a data transformation in which center calculations, usually mean calculations, are performed on values within a sliding window across the input data set. http://purl.obolibrary.org/obo/OBI_0200078 descriptive statistical calculation objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective A descriptive statistical calculation objective is a data transformation objective which concerns any calculation intended to describe a feature of a data set, for example, its center or its variability. http://purl.obolibrary.org/obo/OBI_0200079 mean calculation http://purl.obolibrary.org/obo/OBI_0200184 descriptive statistical calculation data transformation A mean calculation is a descriptive statistics calculation in which the mean is calculated by taking the sum of all of the observations in a data set divided by the total number of observations. It gives a measure of the 'center of gravity' for the data set. It is also known as the first moment. http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification to transformation input data into output data http://purl.obolibrary.org/obo/OBI_0200170 averaging data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation An averaging data transformation is a data transformation that has objective averaging. http://purl.obolibrary.org/obo/OBI_0200177 center calculation objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective A center calculation objective is a data transformation objective where the aim is to calculate the center of an input data set. http://purl.obolibrary.org/obo/OBI_0200181 center calculation data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation A center calculation data transformation is a data transformation that has objective of center calculation. http://purl.obolibrary.org/obo/OBI_0200184 descriptive statistical calculation data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation A descriptive statistical calculation data transformation is a data transformation that has objective descriptive statistical calculation and which concerns any calculation intended to describe a feature of a data set, for example, its center or its variability. http://purl.obolibrary.org/obo/OBI_0302716 pool of specimens http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A pool of specimens is a mixture of a population of samples which have been gathered from one or more sample populations, obtained by the physical process of mixing individual specimens, e.g. mixing the DNA collected from the individual fish. http://purl.obolibrary.org/obo/OBI_0302884 extraction http://purl.obolibrary.org/obo/OBI_0600014 material component separation A material separation in which a desired component of an input material is separated from the remainder http://purl.obolibrary.org/obo/OBI_0302885 filtration http://purl.obolibrary.org/obo/OBI_0600014 material component separation filtration is a process which separates components suspended in a fluid based on granularity properties relying on a filter device http://purl.obolibrary.org/obo/OBI_0302886 centrifugation http://purl.obolibrary.org/obo/OBI_0600014 material component separation centrifugation is a process separating molecules by size or density using centrifugal forces generated by a spinning rotor. G-forces of several hundred thousand times gravity are generated in ultracentrifugation http://purl.obolibrary.org/obo/OBI_0302893 storage http://purl.obolibrary.org/obo/OBI_0000838 material maintenance A maintenance process by which material entities that are not actively metabolizing are placed in well identified location and possibly under controlled environment in ad-hoc devices/structures in order to preserve and protect them from decay/alteration and maintain availability http://purl.obolibrary.org/obo/OBI_0302914 digital curation http://purl.obolibrary.org/obo/IAO_0000572 documenting Digital curation is the process of establishing and developing long term repositories of digital assets for current and future reference by researchers, scientists, and historians, and scholars generally. http://purl.obolibrary.org/obo/OBI_0400106 centrifuge http://purl.obolibrary.org/obo/OBI_0000932 material separation device A device with a rapidly rotating container that applies centrifugal force to its contents http://purl.obolibrary.org/obo/OBI_0400168 microtome http://purl.obolibrary.org/obo/OBI_0000932 material separation device A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand. http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism http://purl.obolibrary.org/obo/OBI_0000659 specimen collection a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation http://purl.obolibrary.org/obo/OBI_0600008 acquisition http://purl.obolibrary.org/obo/OBI_0001928 selection the planned process of gaining possession of a continuant http://purl.obolibrary.org/obo/OBI_0600012 environmental material collection http://purl.obolibrary.org/obo/OBI_0000659 specimen collection environmental_material_collection is an acquisition where an object is taken from an environment and put into a storage container. Roles include, environment, thing collected, container, acquirer. http://purl.obolibrary.org/obo/OBI_0600014 material component separation http://purl.obolibrary.org/obo/OBI_0000094 material processing a material processing in which components of an input material become segregated in space http://purl.obolibrary.org/obo/OBI_0600024 maintaining cell culture http://purl.obolibrary.org/obo/OBI_0000838 material maintenance a protocol application in which cells are kept alive in a defined environment outside of an organism. part of cell_culturing http://purl.obolibrary.org/obo/OBI_0600036 establishing cell culture http://purl.obolibrary.org/obo/OBI_0000094 material processing a process through which a new type of cell culture or cell line is created, either through the isolation and culture of one or more cells from a fresh source, or the deliberate experimental modification of an existing cell culture (e.g passaging a primary culture to become a secondary culture or line, or the immortalization or stable genetic modification of an existing culture or line). http://purl.obolibrary.org/obo/OBI_0600044 lavage http://purl.obolibrary.org/obo/OBI_0600014 material component separation A protocol application to separate cells and/or cellular secretions from an anatomical space by the introduction and removal of fluid http://purl.obolibrary.org/obo/OBI_0600052 dialysis http://purl.obolibrary.org/obo/OBI_0600014 material component separation a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition http://purl.obolibrary.org/obo/OBI_0666666 RNA extraction http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction A RNA extraction is a nucleic acid extraction where the desired output material is RNA http://purl.obolibrary.org/obo/OBI_0666667 nucleic acid extraction http://purl.obolibrary.org/obo/OBI_0302884 extraction a material separation to recover the nucleic acid fraction of an input material http://purl.obolibrary.org/obo/OBI_1110109 target of material addition http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity into which another is being added in a material combinatino process http://purl.obolibrary.org/obo/OGMS_0000031 disease http://purl.obolibrary.org/obo/BFO_0000016 disposition A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. http://purl.obolibrary.org/obo/OGMS_0000090 treatment http://purl.obolibrary.org/obo/BFO_0000015 process A processual entity whose completion is hypothesized (by a healthcare provider) to alleviate the signs and symptoms associated with a disorder http://purl.obolibrary.org/obo/PATO_0000011 age http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A time quality inhering in a bearer by virtue of how long the bearer has existed. http://purl.obolibrary.org/obo/PATO_0000047 biological sex http://purl.obolibrary.org/obo/BFO_0000019 quality An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. http://purl.obolibrary.org/obo/PATO_0000122 length http://purl.obolibrary.org/obo/BFO_0000019 quality A 1-D extent quality which is equal to the distance between two points. http://purl.obolibrary.org/obo/PATO_0000146 temperature http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A physical quality of the thermal energy of a system. http://purl.obolibrary.org/obo/PATO_0000383 female http://purl.obolibrary.org/obo/PATO_0000047 biological sex A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. http://purl.obolibrary.org/obo/PATO_0000384 male http://purl.obolibrary.org/obo/PATO_0000047 biological sex A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. http://purl.obolibrary.org/obo/PATO_0001025 pressure http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts. http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity http://purl.obolibrary.org/obo/BFO_0000019 quality A physical object quality which inheres in a single-bearer. http://purl.obolibrary.org/obo/PATO_0001340 hermaphrodite http://purl.obolibrary.org/obo/PATO_0000047 biological sex A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual. http://purl.obolibrary.org/obo/PATO_0001421 alive http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A viability quality inhering in a bearer by virtue of the bearer's condition before death. http://purl.obolibrary.org/obo/PATO_0001422 dead http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. http://purl.obolibrary.org/obo/PATO_0001985 frozen http://purl.obolibrary.org/obo/PATO_0001237 quality of a single physical entity A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. http://purl.obolibrary.org/obo/UO_0000003 time unit http://purl.obolibrary.org/obo/IAO_0000003 measurement unit label A unit which is a standard measure of the dimension in which events occur in sequence. http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count http://purl.obolibrary.org/obo/IAO_0000109 measurement data item An information content entity that is a representation of counting. http://purl.obolibrary.org/obo/APOLLO_SV_00000085 age data by age brackets http://purl.obolibrary.org/obo/IAO_0000100 data set A data set consisting of measurements of age organized in age brackets. http://purl.obolibrary.org/obo/IAO_0020000 proper name http://purl.obolibrary.org/obo/IAO_0000030 information content entity A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity. http://purl.obolibrary.org/obo/IAO_0020010 dubbing process http://purl.obolibrary.org/obo/OBI_0000011 planned process A dubbing process is a planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity. http://purl.obolibrary.org/obo/IAO_0020015 personal name http://purl.obolibrary.org/obo/IAO_0020000 proper name A personal name is a proper name identifying an individual person. http://purl.obolibrary.org/obo/OGMS_0000104 diagnostic process http://purl.obolibrary.org/obo/BFO_0000015 process An interpretive process that has as input a clinical picture of a given patient and as output an assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these. http://purl.obolibrary.org/obo/OMIABIS_0000000 biobank http://purl.obolibrary.org/obo/BFO_0000027 object aggregate A biobank is a collections of samples of biological substances (e.g. tissue, blood, DNA) which are linked to data about the samples and their donors. They have a dual nature as collections of samples and data. http://purl.obolibrary.org/obo/OMIABIS_0000001 human biobank http://purl.obolibrary.org/obo/OMIABIS_0000000 biobank A human biobank is a collections of samples of human body substances (e.g. Tissue, blood, DNA) which are linked to personal data and socio deographic information about the donors of the material. They have a dual nature as collections of samples and data." http://purl.obolibrary.org/obo/OMIABIS_0000004 ISO 3166-1 alpha-2 code http://purl.obolibrary.org/obo/IAO_0020000 proper name An identifier that consists of two letters, is part of the ISO 3166-1, and designates countries, dependent territories, and special areas of geographical interest. http://purl.obolibrary.org/obo/OMIABIS_0000011 contacting http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that involves a human being and is intended to initiate a communication with another human being. http://purl.obolibrary.org/obo/OMIABIS_0000012 contact role http://purl.obolibrary.org/obo/OMRSE_00000024 role in human social processes A role borne by a human being that is part of an group of individuals and acts as contact person for the group. This role gets realized by the bearer being a participant in a contacting process. http://purl.obolibrary.org/obo/OMIABIS_0000013 biobank contact person http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens A human being that is member of a biobank organization and bears the organization contact role. http://purl.obolibrary.org/obo/OMIABIS_0000016 postal address of biobank contact person http://purl.obolibrary.org/obo/IAO_0000422 postal address Postal address used as a directive for deliveries to the biobank contact person. http://purl.obolibrary.org/obo/OMIABIS_0000017 department http://purl.obolibrary.org/obo/OBI_0000245 organization An organization with a specific responsibility that is a part of a larger organization with a specific responsibility. http://purl.obolibrary.org/obo/OMIABIS_0000021 telephone number http://purl.obolibrary.org/obo/IAO_0000300 textual entity A telephone number is a textual entity consisting of a sequence of digits used to call from one telephone line to another in a public switched telephone network. http://purl.obolibrary.org/obo/OMIABIS_0000023 post-office box number http://purl.obolibrary.org/obo/IAO_0000578 centrally registered identifier A centrally registered identifier denoting a post-office box. http://purl.obolibrary.org/obo/OMIABIS_0000024 post-office box http://purl.obolibrary.org/obo/BFO_0000040 material entity A post-office box is material entity that is a box on the premises of a post office station and is uniquely addressable. http://purl.obolibrary.org/obo/OMIABIS_0000026 postal code http://purl.obolibrary.org/obo/IAO_0000300 textual entity A postal code is a textual entity that is a series of letters and/or digits and is part of a postal address for the purpose of sorting mail. http://purl.obolibrary.org/obo/OMIABIS_0000029 settlement part of address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is part of a postal address and denotes a human settlement for the purpose of delivering mail. http://purl.obolibrary.org/obo/OMIABIS_0000031 intra-settlement specification part of address http://purl.obolibrary.org/obo/IAO_0000300 textual entity A textual entity that is part of a postal address and specifies the location inside the settlement (which is specified by another part of the address). This can be a street name and a house number, or just a number or a post-office box number. http://purl.obolibrary.org/obo/OMIABIS_0000034 name of hosted study collection http://purl.obolibrary.org/obo/IAO_0020000 proper name The proper name that designates a hosted study collection. http://purl.obolibrary.org/obo/OMIABIS_0000041 street http://purl.obolibrary.org/obo/BFO_0000040 material entity A street is a thoroughfare in a built environment. http://purl.obolibrary.org/obo/OMIABIS_0000043 intra-settlement specification part of address of sample collection or study contact http://purl.obolibrary.org/obo/OMIABIS_0000031 intra-settlement specification part of address Sample Collection/Study contact address http://purl.obolibrary.org/obo/OMIABIS_0000046 CTEP organization identifier http://purl.obolibrary.org/obo/IAO_0020000 proper name An identifier for an organization that is assigned to that organization by the Cancer Therapy Evaluation Program. http://purl.obolibrary.org/obo/OMIABIS_0000047 biobank identifier with ISO 3166-1 alpha-2 code and CTEP organization identifier http://purl.obolibrary.org/obo/OMIABIS_0000005 biobank idenfier with ISO 3166-1 alpha-2 code A biobank identifier that has both an ISO 3166-1 alpha-2 code and a CTEP organization code. http://purl.obolibrary.org/obo/OMIABIS_0000049 bone marrow specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that refers to the tissue at the center of large bones which is the place where new blood cells are produced. http://purl.obolibrary.org/obo/OMIABIS_0000050 fixed tissue specimen http://purl.obolibrary.org/obo/OBI_0000953 processed specimen A processed specimen that is the output of a fixation process. http://purl.obolibrary.org/obo/OMIABIS_0000051 fixed tissue block specimen http://purl.obolibrary.org/obo/OMIABIS_0000050 fixed tissue specimen A fixed tissue specimen that is in block form. http://purl.obolibrary.org/obo/OMIABIS_0000052 fixed tissue slide specimen http://purl.obolibrary.org/obo/OMIABIS_0000050 fixed tissue specimen A fixed tissue specimen that is placed in a slide. http://purl.obolibrary.org/obo/OMIABIS_0000053 flash frozen specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen that has been instantly/quickly frozen by subjecting the specimen to cryogenic temperatures, or in direct contact with liquid nitrogen at -320.8F 0r -196C. http://purl.obolibrary.org/obo/OMIABIS_0000054 fresh tissue specimen http://purl.obolibrary.org/obo/OBI_0000971 fresh specimen A fresh specimen that is in a tissue form. http://purl.obolibrary.org/obo/OMIABIS_0000055 frozen tissue block specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen is a tissue sample preserved in a block. http://purl.obolibrary.org/obo/OMIABIS_0000056 frozen tissue slide specimen http://purl.obolibrary.org/obo/OBI_0000922 frozen specimen A frozen specimen that has been sliced from a tissue block into thin layers that are placed on a glass to be examined under a microscope. http://purl.obolibrary.org/obo/OMIABIS_0000057 microdissected specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that has been procured from a histology slide under direct microscopic visualization. http://purl.obolibrary.org/obo/OMIABIS_0000060 survey data http://purl.obolibrary.org/obo/IAO_0000027 data item A data set that contains the outcome of a survey. http://purl.obolibrary.org/obo/OMIABIS_0000061 sampling specimens for biobank http://purl.obolibrary.org/obo/OBI_0000011 planned process The process of collecting or selecting an aggregate of specimens into a biobank. http://purl.obolibrary.org/obo/OMIABIS_0000093 biobank contact role http://purl.obolibrary.org/obo/OMIABIS_0000012 contact role A contact role borne by a member of a sample collection or study organization and realized by serving as the contact for the collection or the study. http://purl.obolibrary.org/obo/OMIABIS_0000099 sample collection or study contact person http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens A human being acting as bearing the contact role for a sample collection or a study. http://purl.obolibrary.org/obo/OMIABIS_0000100 study principle investigator or responsible http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens The principle investigtor or responsible person for a study or a sample collection. http://purl.obolibrary.org/obo/OMIABIS_00001006 specimen disease state datum http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the pathological assessment of a specimen. http://purl.obolibrary.org/obo/OMIABIS_00001010 diseased state specimen datum http://purl.obolibrary.org/obo/OMIABIS_00001006 specimen disease state datum A specimen disease state datum item that specifies that the specimen in question consists of a disorder. http://purl.obolibrary.org/obo/OMIABIS_00001011 mixed state specimen datum http://purl.obolibrary.org/obo/OMIABIS_00001006 specimen disease state datum A specimen disease state datum that specifies that the specimen in question consists of partially normal tissue and a disorder. http://purl.obolibrary.org/obo/OMIABIS_00001012 normal state specimen datum http://purl.obolibrary.org/obo/OMIABIS_00001006 specimen disease state datum A specimen disease state datum that specifies that the specimenin questions consists of normal tissue. http://purl.obolibrary.org/obo/OMIABIS_00001013 obsolote_unknown state specimen data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A specimen disease state data of the procured specimen that is unclear. http://purl.obolibrary.org/obo/OMIABIS_0000911 fixation http://purl.obolibrary.org/obo/OBI_0000094 material processing A material processing that uses chemical process by which biological tissues are preserved from decay. Fixation terminates any ongoing biochemical reactions and may increase stability of the treated tissues. http://purl.obolibrary.org/obo/OMIABIS_0001000 age interval information http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that is about a data set that has age information and specifies the range of age information in that data set. http://purl.obolibrary.org/obo/OMIABIS_0001003 obsolete_survey data http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class A data set that contains additional information about a group of individuals and is gathered through a survey. http://purl.obolibrary.org/obo/OMIABIS_0001004 date of data entry http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when data about the sample collection was reported into a database. http://purl.obolibrary.org/obo/OMIABIS_0001005 date of data update http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when data about the sample collection was last updated in a database. http://purl.obolibrary.org/obo/OMIABIS_0001006 end date of sampling for biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when the sampling of specimens for a biobank ended. http://purl.obolibrary.org/obo/OMIABIS_0001007 start date of sampling for biobank http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that indicates the time when the sampling of specimens for a biobank started. http://purl.obolibrary.org/obo/OMIABIS_0001010 count of current sampled human study participant http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count that is about the aggregate of individuals who have contributed biological specimens in a study. http://purl.obolibrary.org/obo/OMIABIS_0001011 count of current total human study participant http://purl.obolibrary.org/obo/APOLLO_SV_00000032 count A count that is about the aggregate of individuals who have been recruited to participate in a study. http://purl.obolibrary.org/obo/OMIABIS_0001012 physiological measurement data http://purl.obolibrary.org/obo/IAO_0000027 data item A measurement datum that contains the assessment information about the functioning of a major organ system, the extent of disease or disability,as well as the provision and/or response to therapeutic interventions. http://purl.obolibrary.org/obo/OMIABIS_0001013 storage temperature setting http://purl.obolibrary.org/obo/IAO_0000140 setting datum A setting datum that specifies the temperature inside a container participating in a storage process. http://purl.obolibrary.org/obo/OMIABIS_0001014 omics experiment on specimen http://purl.obolibrary.org/obo/OBI_0000011 planned process Technologies that measure some characteristic of a large family of cellular molecules, such as genes, proteins, or small metabolites, have been named by appending the suffix "-omics," as in "genomics." Omics refers to the collective technologies used to explore the roles, relationships, and actions of the various types of molecules that make up the cells of an organism. http://purl.obolibrary.org/obo/OMIABIS_0001015 number of sampled human study participants objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the number of individuals to participate in a study and provide biological specimens to the study. http://purl.obolibrary.org/obo/OMIABIS_0001016 number of total human study participant objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification that specifies the total number of individuals who are planned to participate in study. http://purl.obolibrary.org/obo/OMIABIS_0001017 case control study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that compares two groups of subjects; those with the disease or condtion under study and a similar group of subjects who do not have the condition. http://purl.obolibrary.org/obo/OMIABIS_0001018 cross sectional study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design in which all participants or a representative subset of participants are examined at only a single time for characteristics of a interest (e.g. a specific disease). http://purl.obolibrary.org/obo/OMIABIS_0001019 longitudinal study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that involves repeated observations of the same entity over time. In the biobank context, longitudinal studies sample a group of people in a given time period, and study them at intervals by the acquisition and analyses of data and/or samples over time. http://purl.obolibrary.org/obo/OMIABIS_0001020 cohort study design http://purl.obolibrary.org/obo/OMIABIS_0001019 longitudinal study design A longitudinal study that aims to study a case-defined population who presently have a certain condition or recepient of a particular treatment that are followed over time and are compared with a similar group who do not have condition. http://purl.obolibrary.org/obo/OMIABIS_0001021 panel study design http://purl.obolibrary.org/obo/OMIABIS_0001019 longitudinal study design A longitudinal study that samples a cross-section and studies it at regular intervals. http://purl.obolibrary.org/obo/OMIABIS_0001022 population based study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design that is multidisciplinary done at the population level or among the population groups, generally to find the cause, incidence or spread of the disease or to see the response to the treatment, nutrition or environment. http://purl.obolibrary.org/obo/OMIABIS_0001023 quality control study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design where some aspect of the experiment is quality controlled for the purposes of quality assurance. http://purl.obolibrary.org/obo/OMIABIS_0001024 twin study design http://purl.obolibrary.org/obo/OBI_0500000 study design A study design usually in behavior genetics which aids the study of individual differences between genetically identical twins by highlighting the role of environmental and genetic causes on behavior. http://purl.obolibrary.org/obo/OMIABIS_0001025 survey plan specification http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification that is realized by process of gathering information (e.g. by asking questions). http://purl.obolibrary.org/obo/OMIABIS_0001026 medical record http://purl.obolibrary.org/obo/IAO_0000310 document A document that contains information representing health-relevant qualities of a patient written in a chronological manner and that is primarily used for patient care in a clinical setting. http://purl.obolibrary.org/obo/OMIABIS_0001027 sample medical record http://purl.obolibrary.org/obo/OMIABIS_0001026 medical record A medical record of a specimen donor. http://purl.obolibrary.org/obo/OMIABIS_0001028 sample handling summary http://purl.obolibrary.org/obo/IAO_0000310 document A document that outlines the procedures employed to preserve and protect the material collected during specimen collection as an indication of sample quality. http://purl.obolibrary.org/obo/OMIABIS_0001031 donor patient registry data http://purl.obolibrary.org/obo/OMIABIS_0001002 patient registry data Registry data for a patient who participates as a donor in a study. http://purl.obolibrary.org/obo/OMIABIS_0001033 sample collection data entry http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that involves the initial entering of data about sample collection into a database. http://purl.obolibrary.org/obo/OMIABIS_0001034 sample collection data update http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process which involves editing of specimen collection data into a database after its initial entry. http://purl.obolibrary.org/obo/OMIABIS_0001035 survey execution http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that realizes the concretization of a survey to generate an output(survey data.) http://purl.obolibrary.org/obo/OMIABIS_0001036 temperature regulating http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that aims to control or maintain the temperature of a material entity to a given or required measurement datum. http://purl.obolibrary.org/obo/OMIABIS_0001038 specimen measurement http://purl.obolibrary.org/obo/IAO_0000109 measurement data item A measurement datum that is the result of measurement of the three dimensions of a specimen. http://purl.obolibrary.org/obo/OMIABIS_0001041 surgical procedure http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that uses operative manual and instrumental techniques on a patient to investigate and/or treat a pathological condition such as disease or injury, or to help improve bodily function or appearance. http://purl.obolibrary.org/obo/OMIABIS_0001042 specimen preparation contact http://purl.obolibrary.org/obo/IAO_0020015 personal name A personal name that designates the person who prepared the specimen. http://purl.obolibrary.org/obo/OMIABIS_0001043 time in formalin measurement http://purl.obolibrary.org/obo/IAO_0000416 time measurement datum A time measurement datum that states the duration during which a specimen was submerged in formalin. http://purl.obolibrary.org/obo/OMIABIS_0001044 specimen surgical removal http://purl.obolibrary.org/obo/OBI_0600005 collecting specimen from organism A collecting specimen from organism process that involves removing the specimen from an individual through a surgical procedure. http://purl.obolibrary.org/obo/OMIABIS_0001045 specimen freezing http://purl.obolibrary.org/obo/OBI_0000915 freezing storage A freezing storage for the specimen. http://purl.obolibrary.org/obo/OMIABIS_0001046 specimen ID http://purl.obolibrary.org/obo/IAO_0020000 proper name A proper name that identifies a specimen and is usually in form of a label included in the specimen cassette. http://purl.obolibrary.org/obo/OMIABIS_0001047 case ID http://purl.obolibrary.org/obo/IAO_0020000 proper name An identifier that refers to a specimen donor who is participating in specimen collection process for tissue procurement purposes and is usually assigned at the time of donor procurement. http://purl.obolibrary.org/obo/OMIABIS_0001048 specimen measurement specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification An directive information entity that states the technical standard measurement set and values that determines if a specimen qualifies for procurement or not. http://purl.obolibrary.org/obo/OMIABIS_0001049 time of specimen freezing http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time when a specimen was frozen. http://purl.obolibrary.org/obo/OMIABIS_0001050 time of surgical removal of specimen http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that reports the time when a specimen was collected by a surgical procedure. http://purl.obolibrary.org/obo/OMIABIS_0001054 normal specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that is normal. http://purl.obolibrary.org/obo/OMIABIS_0001075 cerebrospinal fluid specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that refers to a portion of a fluid largely secreted by the choroid plexuses of the ventricles of the brain, filling the ventricles and the subarachnoid cavities of the brain and spinal cord, collected from an organism. http://purl.obolibrary.org/obo/OMIABIS_0001076 faeces specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen that comprises of a portion of faeces collected from an organism. http://purl.obolibrary.org/obo/OMIABIS_0001077 saliva specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen consisting of a portion of saliva collected from an organism. http://purl.obolibrary.org/obo/OMIABIS_0001078 hosting biobank http://purl.obolibrary.org/obo/OMIABIS_0000000 biobank A biobank that collects and stores specimen during specimen collection primarily for the purposes of some study. http://purl.obolibrary.org/obo/OMIABIS_0001081 start of sampling specimens for biobank http://purl.obolibrary.org/obo/BFO_0000035 process boundary The process boundary marking the beginning of a sampling of specimens into a biobank. http://purl.obolibrary.org/obo/OMIABIS_0001082 end of sampling specimens for biobank http://purl.obolibrary.org/obo/BFO_0000035 process boundary The process boundary marking the end of a sampling of specimens into a biobank. http://purl.obolibrary.org/obo/OMRSE_00000024 role in human social processes http://purl.obolibrary.org/obo/BFO_0000023 role A role inhering in an entity realized by social interactions in human society. http://purl.obolibrary.org/obo/OMRSE_00000033 aggregate of organizations http://purl.obolibrary.org/obo/BFO_0000027 object aggregate An object aggregate that is not itself an organization and whose members are only organizations that have some feature in common http://purl.obolibrary.org/obo/OMRSE_00000038 legal person role http://purl.obolibrary.org/obo/OMRSE_00000024 role in human social processes A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law. http://purl.obolibrary.org/obo/CHEBI_16842 formaldehyde http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity The simplest aldehyde. http://purl.obolibrary.org/obo/CHEBI_16991 deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms. http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid. http://purl.obolibrary.org/obo/CL_0000000 cell http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. http://purl.obolibrary.org/obo/CL_0000010 cultured cell http://purl.obolibrary.org/obo/CL_0000578 experimentally modified cell in vitro A cell in vitro that is or has been maintained or propagated as part of a cell culture. http://purl.obolibrary.org/obo/CL_0000578 experimentally modified cell in vitro http://purl.obolibrary.org/obo/CL_0000000 cell A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure. http://purl.obolibrary.org/obo/UBERON_0000178 blood http://purl.obolibrary.org/obo/CARO_0000004 portion of organism substance Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid). http://purl.obolibrary.org/obo/CHEBI_33697 ribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins. http://purl.obolibrary.org/obo/UBERON_0001088 urine http://purl.obolibrary.org/obo/CARO_0000004 portion of organism substance Excretion in liquid state processed by the kidney.[FMA] http://purl.obolibrary.org/obo/APOLLO_SV_00000033 counting http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that computes the totality of some material entity. http://purl.obolibrary.org/obo/GEO_000000004 subnational entity http://purl.obolibrary.org/obo/GEO_000000400 governmental organization a governmental organization that has a local, regional, or territorial government that recognizes a sovereign state as its higher political authority http://purl.obolibrary.org/obo/GEO_000000006 geopolitical dependency http://purl.obolibrary.org/obo/GEO_000000004 subnational entity A subnational entity that does not possess full political independence or sovereignty as a sovereign state, but remains politically outside of the controlling state and controls a geographical region that is outside the controlling state's integral region. http://purl.obolibrary.org/obo/GEO_000000400 governmental organization http://purl.obolibrary.org/obo/OBI_0000245 organization An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization". http://purl.obolibrary.org/obo/PCO_0000000 collection of organisms http://purl.obolibrary.org/obo/BFO_0000027 object aggregate A material entity that consists of two or more organisms, viruses, or viroids. http://purl.obolibrary.org/obo/GO_0008150 biological_process http://purl.obolibrary.org/obo/BFO_0000015 process Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. http://purl.obolibrary.org/obo/CARO_0001008 gross anatomical part http://purl.obolibrary.org/obo/BFO_0000040 material entity Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells. http://purl.obolibrary.org/obo/CARO_0000004 portion of organism substance http://purl.obolibrary.org/obo/CARO_0001008 gross anatomical part Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. http://purl.obolibrary.org/obo/OGMS_0000045 disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. http://purl.obolibrary.org/obo/OGMS_0000073 diagnosis http://purl.obolibrary.org/obo/IAO_0000027 data item The representation of a conclusion of a diagnostic process. http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region temporal instant. http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires man http://purl.obolibrary.org/obo/OMIABIS_0001040 specimen meeting specification http://purl.obolibrary.org/obo/OBI_0100051 specimen adherance to specification http://purl.obolibrary.org/obo/OMIABIS_0001079 specimen donor http://purl.obolibrary.org/obo/NCBITaxon_9606 Homo sapiens sample donor http://purl.obolibrary.org/obo/NCBITaxon_2 Bacteria http://purl.obolibrary.org/obo/OBI_0100026 organism eubacteria http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata bony vertebrates http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/OBI_0100026 organism eukaryotes http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda http://purl.obolibrary.org/obo/NCBITaxon_117571 Euteleostomi tetrapods http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota http://purl.obolibrary.org/obo/NCBITaxon_32523 Tetrapoda amniotes http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/NCBITaxon_32524 Amniota mammals http://purl.obolibrary.org/obo/NCBITaxon_7742 Vertebrata http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria vertebrates http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000182 history http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/GEO_000000102 geographical entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000024 fiat object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000027 object aggregate http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000142 one-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000146 two-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000147 zero-dimensional continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000140 continuant fiat boundary http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000029 site http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/IAO_0000429 email address http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/IAO_0000582 time stamped measurement datum http://purl.obolibrary.org/obo/IAO_0000109 measurement data item http://purl.obolibrary.org/obo/OMIABIS_0001037 comment from tissue procurement http://purl.obolibrary.org/obo/IAO_0000300 textual entity http://purl.obolibrary.org/obo/NCBITaxon_10239 Viruses http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2157 Archaea http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/GEO_000000151 geographical region http://purl.obolibrary.org/obo/GEO_000000102 geographical entity http://purl.obolibrary.org/obo/OMIABIS_0000094 sample collection or study contact role http://purl.obolibrary.org/obo/OMIABIS_0000012 contact role http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_33213 Bilateria http://purl.obolibrary.org/obo/NCBITaxon_33154 Opisthokonta http://purl.obolibrary.org/obo/NCBITaxon_314146 Euarchontoglires http://purl.obolibrary.org/obo/NCBITaxon_40674 Mammalia http://purl.obolibrary.org/obo/OMRSE_00000023 collection of humans http://purl.obolibrary.org/obo/PCO_0000000 collection of organisms http://purl.obolibrary.org/obo/OMIABIS_0000006 sample collection or study identifier Sample Collection/Study ID A sample collection or study proper name that is centrally registered and unique within one framework. http://purl.obolibrary.org/obo/OMIABIS_0000033 hosted study collection Hosted studies A object aggregate that consists of specimens, participates in a study and is part of a biobank. http://purl.obolibrary.org/obo/OMIABIS_0001001 average age An average value of age for a certain group of individuals. http://purl.obolibrary.org/obo/OMIABIS_0001032 study subject survey data A survey data for a specimen donor. http://purl.obolibrary.org/obo/BFO_0000001 entity http://www.geneontology.org/formats/oboInOwl#ObsoleteClass Obsolete Class http://purl.obolibrary.org/obo/RO_0000052 inheres in at all times http://purl.obolibrary.org/obo/BFO_0000070 specifically depends on at all times inheres_in b inheres_in c at t =Def. b is a dependent continuant & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [051-002]) http://purl.obolibrary.org/obo/BFO_0000121 has temporal part http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part [copied from inverse property 'temporal part of'] b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003]) http://purl.obolibrary.org/obo/BFO_0000139 temporal part of http://purl.obolibrary.org/obo/BFO_0000132 part of occurrent b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003]) http://purl.obolibrary.org/obo/BFO_0000185 has history http://purl.obolibrary.org/obo/BFO_0000067 contains process b has_history c iff c history_of b [XXX-001 http://purl.obolibrary.org/obo/BFO_0000186 part of continuant at all times that whole exists http://purl.obolibrary.org/obo/BFO_0000176 part of continuant at some time [copied from inverse property 'has continuant part at all times'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001]) http://purl.obolibrary.org/obo/IAO_0000039 has measurement unit label http://purl.obolibrary.org/obo/BFO_0000051 has part A relation between a value specification and its unit of measurement. http://purl.obolibrary.org/obo/IAO_0000219 denotes http://purl.obolibrary.org/obo/IAO_0000136 is about denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically http://purl.obolibrary.org/obo/IAO_0000221 is quality measurement of http://purl.obolibrary.org/obo/IAO_0000136 is about m is a quality measurement of q at t when q is a quality there is a measurement process p that has specified output m, a measurement datum, that is about q http://purl.obolibrary.org/obo/IAO_0000413 is duration of http://purl.obolibrary.org/obo/IAO_0000136 is about relates a process to a time-measurement-datum that represents the duration of the process http://purl.obolibrary.org/obo/IAO_0000581 has time stamp http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken http://purl.obolibrary.org/obo/IAO_0000583 has measurement datum http://purl.obolibrary.org/obo/BFO_0000051 has part relates a time stamped measurement datum to the measurement datum that was measured http://purl.obolibrary.org/obo/OBI_0000293 has_specified_input http://purl.obolibrary.org/obo/RO_0000057 has participant A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000299 has_specified_output http://purl.obolibrary.org/obo/RO_0000057 has participant A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000312 is_specified_output_of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000643 has grain http://purl.obolibrary.org/obo/BFO_0000051 has part the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car. http://purl.obolibrary.org/obo/OBI_0001938 has value specification http://purl.obolibrary.org/obo/BFO_0000051 has part A relation between an information content entity and a value specification that specifies its value. http://purl.obolibrary.org/obo/OMIABIS_0000042 is contact information about http://purl.obolibrary.org/obo/IAO_0000136 is about a is contact information for b, if a is a information content entity, b is a human being or an organization and a identifies a physical location or electronic resource that allows to initiate communication with a. http://purl.obolibrary.org/obo/BFO_0000177 part of continuant at all times http://purl.obolibrary.org/obo/BFO_0000176 part of continuant at some time [copied from inverse property 'has continuant part at all times that part exists'] forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t) http://purl.obolibrary.org/obo/BFO_0000187 has continuant part at all times that part exists http://purl.obolibrary.org/obo/BFO_0000178 has continuant part at some time forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t) http://purl.obolibrary.org/obo/BFO_0000110 has continuant part at all times http://purl.obolibrary.org/obo/BFO_0000178 has continuant part at some time b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001]) http://purl.obolibrary.org/obo/BFO_0000118 has proper occurrent part http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001 http://purl.obolibrary.org/obo/RO_0000087 has role http://purl.obolibrary.org/obo/RO_0000053 bearer of has_role http://purl.obolibrary.org/obo/RO_0000081 role of http://purl.obolibrary.org/obo/RO_0000052 inheres in role_of http://purl.obolibrary.org/obo/BFO_0000166 participates in at all times http://purl.obolibrary.org/obo/BFO_0000168 has specific dependent at all times http://purl.obolibrary.org/obo/RO_0000086 has quality http://purl.obolibrary.org/obo/RO_0000053 bearer of http://purl.obolibrary.org/obo/BFO_0000168 has specific dependent at all times http://purl.obolibrary.org/obo/BFO_0000125 has specific dependent at some time http://purl.obolibrary.org/obo/BFO_0000070 specifically depends on at all times http://purl.obolibrary.org/obo/BFO_0000169 specifically depends on at some time http://purl.obolibrary.org/obo/BFO_0000154 temporal projection of spatiotemporal http://purl.obolibrary.org/obo/BFO_0000157 during which exists http://purl.obolibrary.org/obo/BFO_0000153 projects onto temporal region http://purl.obolibrary.org/obo/BFO_0000108 exists at http://purl.obolibrary.org/obo/BFO_0000155 occupies temporal region http://purl.obolibrary.org/obo/BFO_0000108 exists at http://purl.obolibrary.org/obo/BFO_0000079 function of at all times a function_of b at t =Def. a is a function and a inheres_in b at t. (axiom label in BFO2 Reference: [067-001]) http://purl.obolibrary.org/obo/BFO_0000184 history of [copied from inverse property 'has history'] b has_history c iff c history_of b [XXX-001 http://purl.obolibrary.org/obo/BFO_0000067 contains process [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t [XXX-001 http://purl.obolibrary.org/obo/IAO_0000136 is about is_about is a (currently) primitive relation that relates an information artifact to an entity. http://purl.obolibrary.org/obo/OBI_0000124 is_supported_by_data The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process http://purl.obolibrary.org/obo/OBI_0000417 achieves_planned_objective This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0000833 objective_achieved_by This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0000846 is member of organization Relating a legal person or organization to an organization in the case where the legal person or organization has a role as member of the organization. http://purl.obolibrary.org/obo/OBI_0001688 has organization member Relating an organization to a legal person or organization. http://purl.obolibrary.org/obo/OBI_0001937 has specified value A relation between a value specification and a number that quantifies it. http://purl.obolibrary.org/obo/IAO_0020012 designates x designates y, if for any given group of language users, x is an information content entity, is about y, and represents y in a linguistic context.. http://purl.obolibrary.org/obo/IAO_0020018 is designated by p1 is designated by p2, if p2 is an information content entity that represents p1 in a linguistic context. http://purl.obolibrary.org/obo/OMIABIS_0000009 administrates a administrates b if c owns b and some rights and obligations grounded in the owning relation regarding b are transferred from c to a. http://purl.obolibrary.org/obo/OMIABIS_0000048 is owned by a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b. http://purl.obolibrary.org/obo/BFO_0000117 has occurrent part b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001]) http://purl.obolibrary.org/obo/BFO_0000132 part of occurrent [copied from inverse property 'has occurrent part'] b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001]) http://purl.obolibrary.org/obo/BFO_0000176 part of continuant at some time [copied from inverse property 'has continuant part at some time'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001]) http://purl.obolibrary.org/obo/BFO_0000085 has function at some time a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001]) http://purl.obolibrary.org/obo/BFO_0000178 has continuant part at some time b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001]) http://purl.obolibrary.org/obo/BFO_0000054 realized in realized_in http://purl.obolibrary.org/obo/RO_0000053 bearer of is bearer of http://purl.obolibrary.org/obo/RO_0000056 participates in participates_in http://purl.obolibrary.org/obo/RO_0000057 has participant has_participant http://purl.obolibrary.org/obo/RO_0001015 location of location_of http://purl.obolibrary.org/obo/RO_0001025 located in located_in http://purl.obolibrary.org/obo/BFO_0000051 has part has_part http://purl.obolibrary.org/obo/BFO_0000050 part of part_of http://purl.obolibrary.org/obo/BFO_0000126 has spatiotemporal occupant http://purl.obolibrary.org/obo/BFO_0000130 occupies spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000151 projects onto spatial region at some time http://purl.obolibrary.org/obo/BFO_0000152 spatial projection of spatiotemporal at some time http://purl.obolibrary.org/obo/BFO_0000055 realizes http://purl.obolibrary.org/obo/RO_0001000 derives from http://purl.obolibrary.org/obo/GEO_000000012 member of http://purl.obolibrary.org/obo/OMIABIS_0000008 owns http://purl.obolibrary.org/obo/BFO_0000156 has temporal occupant http://purl.obolibrary.org/obo/BFO_0000083 occupies spatial region at some time http://purl.obolibrary.org/obo/BFO_0000123 has spatial occupant at some time http://purl.obolibrary.org/obo/BFO_0000125 has specific dependent at some time http://purl.obolibrary.org/obo/BFO_0000169 specifically depends on at some time http://purl.obolibrary.org/obo/BFO_0000058 concretized by at some time http://purl.obolibrary.org/obo/BFO_0000059 concretizes at some time http://purl.obolibrary.org/obo/BFO_0000157 during which exists http://purl.obolibrary.org/obo/BFO_0000108 exists at