Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/PPO_0002026 reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of reproductive shoot system A plant structure presence that represents whether a reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002057 ripe megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of ripe megasporangiate strobilus A plant structure presence that represents whether a ripe megasporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002058 abscised leaf presence http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait presence of abscised leaf A plant phenological trait that is measured by the number of true leaves true leaf that a whole plant has abscised. http://purl.obolibrary.org/obo/PPO_0001049 fresh megasporangiate strobilus http://purl.obolibrary.org/obo/PO_0005032 megasporangiate strobilus fresh seed cone A megasporangiate strobilus that has not yet been abscised and has not yet releases all of its seeds. http://purl.obolibrary.org/obo/PPO_0001050 ripening megasporangiate strobilus http://purl.obolibrary.org/obo/PPO_0001049 fresh megasporangiate strobilus ripening seed cone A fresh megasporangiate strobilus that is in the megasporangiate strobilus ripening stage. http://purl.obolibrary.org/obo/PPO_0001051 unripe megasporangiate strobilus http://purl.obolibrary.org/obo/PPO_0001050 ripening megasporangiate strobilus unripe seed cone A ripening megasporangiate strobilus that is in the megasporangiate strobilus unripe stage. http://purl.obolibrary.org/obo/PPO_0001052 ripe megasporangiate strobilus http://purl.obolibrary.org/obo/PPO_0001050 ripening megasporangiate strobilus ripe seed cone A ripening megasporangiate strobilus that is in the megasporangiate strobilus ripe stage. http://purl.obolibrary.org/obo/PPO_0001054 open staminate flower http://purl.obolibrary.org/obo/PPO_0001033 open flower open male flower A 'staminate flower' that is in the 'open flower stage'. http://purl.obolibrary.org/obo/PPO_0001055 open pistillate flower http://purl.obolibrary.org/obo/PPO_0001033 open flower open female flower A 'pistillate flower' that is in the 'open flower stage'. http://purl.obolibrary.org/obo/PPO_0002059 abscised fruit or seed presence http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait presence of abscised fruit or seed A plant phenological trait that is measured by the number of a whole plant's ripe fruits ripe fruit that have been abscised or removed by an herbivore and/or the number of ripe fruits on a whole plant that have abscised at least one mature seed. http://purl.obolibrary.org/obo/PPO_0002060 abscised megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait presence of abscised megasporangiate strobilus A plant phenological trait that is measured by the number of a whole plant's ripe megasporangiate strobili that have been abscised or removed by an herbivore and/or the number of ripe megasporangiate strobili on a whole plant that have abscised at least one mature seed. http://purl.obolibrary.org/obo/PPO_0002061 non-vascular leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-vascular leaf A plant structure presence that represents whether a non-vascular leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002359 abscised megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002060 abscised megasporangiate strobilus presence abscised cone or seed present An abscised megasporangiate strobilus presence trait that is a quality of a whole plant from which at least one ripe megasporangiate strobilus has been abscised or removed by an herbivore or that has at least one ripe megasporangiate strobilus that has at least one mature seed that has abscised. http://purl.obolibrary.org/obo/PPO_0002658 abscised megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002060 abscised megasporangiate strobilus presence abscised cone or seed absent An abscised megasporangiate strobilus presence trait that is a quality of a whole plant from which no ripe megasporangiate strobili PPO:0001052 have been abscised or removed by herbivores and that does not have any ripe megasporangiate strobili from which any mature seeds have abscised. http://purl.obolibrary.org/obo/PPO_0002027 non-senesced reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-senesced reproductive shoot system A plant structure presence that represents whether a non-senesced reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002028 unopened reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unopened reproductive shoot system A plant structure presence that represents whether a unopened reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002029 open reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of open reproductive shoot system A plant structure presence that represents whether a open reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002030 pollen-releasing reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of pollen-releasing reproductive shoot system A plant structure presence that represents whether a pollen-releasing reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002031 senesced reproductive shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of senesced reproductive shoot system A plant structure presence that represents whether a senesced reproductive shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity goal specification A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved. http://purl.obolibrary.org/obo/IAO_0000027 data item http://purl.obolibrary.org/obo/IAO_0000030 information content entity data An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. http://purl.obolibrary.org/obo/IAO_0000184 scatter plot http://purl.obolibrary.org/obo/IAO_0000038 graph scattergraph A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis. http://purl.obolibrary.org/obo/IAO_0000311 publication http://purl.obolibrary.org/obo/IAO_0000310 document published document A document that is the output of a publishing process. http://purl.obolibrary.org/obo/OBI_0000014 regulator role http://purl.obolibrary.org/obo/OBI_0000017 regulatory role regulator a regulatory role involved with making and/or enforcing relevant legislation and governmental orders http://purl.obolibrary.org/obo/OBI_0000018 material supplier role http://purl.obolibrary.org/obo/OBI_0000947 service provider role material provider role a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation. http://purl.obolibrary.org/obo/OBI_0000023 classified data set http://purl.obolibrary.org/obo/IAO_0000100 data set data set with assigned class labels A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels. http://purl.obolibrary.org/obo/OBI_0000648 clustered data set http://purl.obolibrary.org/obo/IAO_0000100 data set data set with assigned discovered class labels A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels. http://purl.obolibrary.org/obo/OBI_0000659 specimen collection process http://purl.obolibrary.org/obo/OBI_0000011 planned process specimen collection A planned process with the objective to obtain a material entity for potential use as an input upon which measurements or observations are performed. http://purl.obolibrary.org/obo/OBI_0000663 class prediction data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation supervised classification data transformation A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction. http://purl.obolibrary.org/obo/OBI_0000700 support vector machine http://purl.obolibrary.org/obo/OBI_0000663 class prediction data transformation SVM A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space. http://purl.obolibrary.org/obo/OBI_0000727 k-nearest neighbors http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation k-NN A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned. http://purl.obolibrary.org/obo/OBI_0000749 CART http://purl.obolibrary.org/obo/OBI_0000707 decision tree building data transformation classification and regression trees A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure. http://purl.obolibrary.org/obo/OBI_0001479 specimen from organism http://purl.obolibrary.org/obo/OBI_0100051 specimen tissue specimen A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm). http://purl.obolibrary.org/obo/OBI_0200000 data transformation http://purl.obolibrary.org/obo/OBI_0000011 planned process data processing A planned process that produces output data from input data. http://purl.obolibrary.org/obo/OBI_0200050 dimensionality reduction http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation data projection A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m. http://purl.obolibrary.org/obo/OBI_0200051 principal components analysis dimensionality reduction http://purl.obolibrary.org/obo/OBI_0200050 dimensionality reduction pca data reduction A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones. http://purl.obolibrary.org/obo/OBI_0200111 data visualization http://purl.obolibrary.org/obo/OBI_0000011 planned process data encoding as image A planned process with the objective to graphically represent some data by inputing the data and outputting images, diagrams or animations. http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation unsupervised classification data transformation A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery. http://purl.obolibrary.org/obo/OBI_0200178 class discovery objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective clustering objective A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic. http://purl.obolibrary.org/obo/OBI_0200179 class prediction objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective classification objective A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data. http://purl.obolibrary.org/obo/OBI_0200188 cross validation objective http://purl.obolibrary.org/obo/OBI_0200172 partitioning objective rotation estimation objective A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis. http://purl.obolibrary.org/obo/PPO_0001009 dormant vegetative bud http://purl.obolibrary.org/obo/PO_0000058 vegetative bud dormant leaf bud A vegetative bud that is participating in a bud dormancy process. http://purl.obolibrary.org/obo/PPO_0001010 non-dormant vegetative bud http://purl.obolibrary.org/obo/PO_0000058 vegetative bud non-dormant leaf bud A vegetative bud that is not participating in a bud dormancy process. http://purl.obolibrary.org/obo/PPO_0001011 swelling vegetative bud http://purl.obolibrary.org/obo/PPO_0001010 non-dormant vegetative bud swelling leaf bud A non-dormant vegetative bud that is in the bud swell stage. http://purl.obolibrary.org/obo/PPO_0001012 breaking vegetative bud http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity breaking leaf bud A non-dormant vegetative bud that is in the bud burst stage. http://purl.obolibrary.org/obo/PPO_0001026 non-senesced reproductive shoot system http://purl.obolibrary.org/obo/PO_0025082 reproductive shoot system non-senesced floral structure A reproductive shoot system with at least one non-senesced floral organ. http://purl.obolibrary.org/obo/PPO_0001027 unopened reproductive shoot system http://purl.obolibrary.org/obo/PPO_0001026 non-senesced reproductive shoot system unopened floral structure A non-senesced reproductive shoot system in which all floral organs are unopened. http://purl.obolibrary.org/obo/PPO_0001028 open reproductive shoot system http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity open floral structure A non-senesced reproductive shoot system with at least one open floral organ. http://purl.obolibrary.org/obo/PPO_0001029 pollen-releasing reproductive shoot system http://purl.obolibrary.org/obo/PPO_0001028 open reproductive shoot system pollen-releasing floral structure An open reproductive shoot system with at least one pollen-releasing floral organ. http://purl.obolibrary.org/obo/PPO_0001030 senesced reproductive shoot system http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity senesced floral structure A reproductive shoot system that has completed floral organ senescence. http://purl.obolibrary.org/obo/PPO_0001036 non-senesced inflorescence http://purl.obolibrary.org/obo/PO_0009049 inflorescence non-senesced flower head An inflorescence with at least one non-senesced flower. In the case of an unopened inflorescence, the non-senesced flower(s) might not be visible. http://purl.obolibrary.org/obo/PPO_0001037 unopened inflorescence http://purl.obolibrary.org/obo/PPO_0001036 non-senesced inflorescence unopened flower head A non-senesced inflorescence in which all flowers are unopened flowers. The unopened flowers might not yet be visible. http://purl.obolibrary.org/obo/PPO_0001038 open inflorescence http://purl.obolibrary.org/obo/PPO_0001036 non-senesced inflorescence open flower head A non-senesced inflorescence with at least one open flower. http://purl.obolibrary.org/obo/PPO_0001039 pollen-releasing inflorescence http://purl.obolibrary.org/obo/PPO_0001038 open inflorescence pollen-releasing flower head An open inflorescence with at least one pollen-releasing flower. http://purl.obolibrary.org/obo/PPO_0001040 senesced inflorescence http://purl.obolibrary.org/obo/PO_0009049 inflorescence senesced flower head An inflorescence on which there are no remaining non-senesced flowers. http://purl.obolibrary.org/obo/PPO_0002034 unopened flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unopened flower A plant structure presence that represents whether a unopened flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002035 open flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of open flower A plant structure presence that represents whether a open flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002036 pollen-releasing flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of pollen-releasing flower A plant structure presence that represents whether a pollen-releasing flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002037 senesced flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of senesced flower A plant structure presence that represents whether a senesced flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002038 inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of inflorescence A plant structure presence that represents whether a inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002039 non-senesced inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-senesced inflorescence A plant structure presence that represents whether a non-senesced inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002040 unopened inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unopened inflorescence A plant structure presence that represents whether a unopened inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002041 open inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of open inflorescence A plant structure presence that represents whether a open inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002042 pollen-releasing inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of pollen-releasing inflorescence A plant structure presence that represents whether a pollen-releasing inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002043 senesced inflorescence presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of senesced inflorescence A plant structure presence that represents whether a senesced inflorescence is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002044 simple fruit or compound fruit presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of simple fruit or compound fruit A plant structure presence that represents whether a simple fruit or compound fruit is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002045 ripening fruit presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of ripening fruit A plant structure presence that represents whether a ripening fruit is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002046 unripe fruit presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unripe fruit A plant structure presence that represents whether a unripe fruit is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait presence of plant structure A plant phenological trait that represents whether a plant structure is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002002 abscised plant structure presence http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait presence of abscised plant structure A plant phenological trait}that is measured by the number of some plant structure that a whole plant has abscised. http://purl.obolibrary.org/obo/PPO_0002003 new shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of new shoot system A plant structure presence that represents whether a new shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002004 new above-ground shoot-borne shoot system presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of new above-ground shoot-borne shoot system A plant structure presence that represents whether a new above-ground shoot-borne shoot system is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002005 new shoot system emerging from ground presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of new shoot system emerging from ground A plant structure presence that represents whether a new shoot system emerging from ground is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002006 new shoot system emerging from ground in first growth cycle presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of new shoot system emerging from ground in first growth cycle A plant structure presence that represents whether a new shoot system emerging from ground in first growth cycle is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002007 seedling presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of seedling A plant phenological trait that is measured by whether or not a whole plant is a seedling. http://purl.obolibrary.org/obo/PPO_0002008 new shoot system emerging from ground in later growth cycle presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of new shoot system emerging from ground in later growth cycle A plant structure presence that represents whether a new shoot system emerging from ground in later growth cycle is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002009 vegetative bud presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of vegetative bud A plant structure presence that represents whether a vegetative bud is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002010 dormant vegetative bud presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of dormant vegetative bud A plant structure presence that represents whether a dormant vegetative bud is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002011 non-dormant vegetative bud presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-dormant vegetative bud A plant structure presence that represents whether a non-dormant vegetative bud is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002012 swelling vegetative bud presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of swelling vegetative bud A plant structure presence that represents whether a swelling vegetative bud is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002013 breaking vegetative bud presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of breaking vegetative bud A plant structure presence that represents whether a breaking vegetative bud is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002014 vascular leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of vascular leaf A plant structure presence that represents whether a vascular leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002015 true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of true leaf A plant structure presence that represents whether a true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002016 unfolding true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unfolding true leaf A plant structure presence that represents whether a unfolding true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002017 unfolded true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unfolded true leaf A plant structure presence that represents whether a unfolded true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002018 non-senescing unfolded true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-senescing unfolded true leaf A plant structure presence that represents whether a non-senescing unfolded true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002019 senescing true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of senescing true leaf A plant structure presence that represents whether a senescing true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002020 immature unfolded true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of immature unfolded true leaf A plant structure presence that represents whether a immature unfolded true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002021 mature true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of mature true leaf A plant structure presence that represents whether a mature true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002022 expanding unfolded true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of expanding unfolded true leaf A plant structure presence that represents whether a expanding unfolded true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002023 expanded immature true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of expanded immature true leaf A plant structure presence that represents whether a expanded immature true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002024 expanding true leaf presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of expanding true leaf A plant structure presence that represents whether a expanding true leaf is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002025 reproductive structure presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of reproductive structure A plant structure presence that represents whether a reproductive structure is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0001046 fresh microsporangiate strobilus http://purl.obolibrary.org/obo/PO_0005031 microsporangiate strobilus fresh pollen cone A microsporangiate strobilus that has not yet completed the pollen-releasing strobilus stage. http://purl.obolibrary.org/obo/PPO_0001047 open microsporangiate strobilus http://purl.obolibrary.org/obo/PPO_0001046 fresh microsporangiate strobilus open pollen cone A fresh microsporangiate strobilus that is in the open microsporangiate strobilus stage. http://purl.obolibrary.org/obo/PPO_0001048 pollen-releasing microsporangiate strobilus http://purl.obolibrary.org/obo/PPO_0001047 open microsporangiate strobilus pollen-releasing pollen cone An open microsporangiate strobilus that is in the pollen-releasing strobilus stage. http://purl.obolibrary.org/obo/PPO_0002047 ripe fruit presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of ripe fruit A plant structure presence that represents whether a ripe fruit is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002048 strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of strobilus A plant structure presence that represents whether a strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002049 microsporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of microsporangiate strobilus A plant structure presence that represents whether a microsporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002050 fresh microsporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of fresh microsporangiate strobilus A plant structure presence that represents whether a fresh microsporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002051 open microsporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of open microsporangiate strobilus A plant structure presence that represents whether a open microsporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002052 pollen-releasing microsporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of pollen-releasing microsporangiate strobilus A plant structure presence that represents whether a pollen-releasing microsporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002053 megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of megasporangiate strobilus A plant structure presence that represents whether a megasporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002054 fresh megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of fresh megasporangiate strobilus A plant structure presence that represents whether a fresh megasporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002055 ripening megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of ripening megasporangiate strobilus A plant structure presence that represents whether a ripening megasporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002056 unripe megasporangiate strobilus presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of unripe megasporangiate strobilus A plant structure presence that represents whether a unripe megasporangiate strobilus is present or absent on a whole plant. http://purl.obolibrary.org/obo/OBI_0002210 histologic grade according to the Fuhrman Nuclear Grading System http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Histologic Grade (Fuhrman Nuclear Grading System) A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System. http://purl.obolibrary.org/obo/OBI_0002224 pathologic primary tumor stage for colon and rectum according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread colorectal primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002232 pathologic primary tumor stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread lung primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002243 pathologic primary tumor stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread kidney primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002256 pathologic primary tumor stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pT: Pathologic spread ovarian primary tumor (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002270 pathologic lymph node stage for colon and rectum according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread colon lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002279 pathologic lymph node stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread colon lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002284 pathologic lymph node stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread kidney lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002287 pathologic lymph node stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification pN: Pathologic spread ovarian lymph nodes (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes. http://purl.obolibrary.org/obo/OBI_0002290 pathologic distant metastases stage for colon according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: colon distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002298 pathologic distant metastases stage for lung according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: lung distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002306 pathologic distant metastases stage for kidney according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: kidney distant Metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002310 pathologic distant metastases stage for ovary according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification M: ovarian distant metastases (AJCC 7th Edition) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery. http://purl.obolibrary.org/obo/OBI_0002314 clinical tumor stage group according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Clinical tumor stage group (AJCC 7th Edition) A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems. http://purl.obolibrary.org/obo/OBI_0002326 International Federation of Gynecology and Obstetrics cervical cancer stage value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Clinical FIGO stage A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems. http://purl.obolibrary.org/obo/OBI_0002341 International Federation of Gynecology and Obstetrics ovarian cancer stage value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Pathologic Tumor Stage Grouping for ovarian cancer (FIGO) A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system. http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification Performance Status Scale A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life). http://purl.obolibrary.org/obo/OBI_0002357 Eastern Cooperative Oncology Group score value specification http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification ECOG score A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient. http://purl.obolibrary.org/obo/OBI_0002363 Karnofsky score vaue specification http://purl.obolibrary.org/obo/OBI_0002356 performance status value specification Karnofsky Score A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment. http://purl.obolibrary.org/obo/PPO_0002032 flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of flower A plant structure presence that represents whether a flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002033 non-senesced flower presence http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence presence of non-senesced flower A plant structure presence that represents whether a non-senesced flower is present or absent on a whole plant. http://purl.obolibrary.org/obo/PPO_0002356 abscised plant structure present http://purl.obolibrary.org/obo/PPO_0002002 abscised plant structure presence An abscised plant structure presence trait that is a quality of a whole plant from which at least one of some plant structure has been abscised or removed. http://purl.obolibrary.org/obo/PPO_0002357 abscised leaf present http://purl.obolibrary.org/obo/PPO_0002058 abscised leaf presence An abscised leaf presence trait that is a quality of a whole plant from which at least one true leaf has been abscised. http://purl.obolibrary.org/obo/PPO_0002600 new shoot system absent http://purl.obolibrary.org/obo/PPO_0002003 new shoot system presence A new shoot system presence trait that is a quality of a whole plant that does not have a new shoot system as part http://purl.obolibrary.org/obo/PPO_0002656 abscised leaf absent http://purl.obolibrary.org/obo/PPO_0002058 abscised leaf presence An abscised leaf presence trait that is a quality of a whole plant from which no true leaves PPO:0001013 have been abscised. http://purl.obolibrary.org/obo/PPO_0002657 abscised fruit or seed absent http://purl.obolibrary.org/obo/PPO_0002059 abscised fruit or seed presence An abscised fruit or seed presence trait that is a quality of a whole plant from which no ripe fruits have been abscised or removed by herbivores and that does not have any ripe fruits from which any mature seeds have abscised. http://purl.obolibrary.org/obo/PPO_0001053 portion of a plant http://purl.obolibrary.org/obo/PO_0009011 plant structure A plant structure that is not a whole plant; i.e. a proper part of a whole plant. Note that a portion of a plant need no longer be physically part of the whole plant from which it originated (e.g., a herbarium specimen). http://purl.obolibrary.org/obo/PPO_0002358 abscised fruit or seed present http://purl.obolibrary.org/obo/PPO_0002059 abscised fruit or seed presence An abscised fruit or seed presence trait that is a quality of a whole plant from which at least one ripe fruit has been abscised or removed by an herbivore or that has at least one ripe fruit from which at least one mature seed has been abscised. http://purl.obolibrary.org/obo/PPO_0002360 non-vascular leaf present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A non-vascular leaf presence trait that is a quality of a whole plant that has at least one non-vascular leaf as part http://purl.obolibrary.org/obo/PPO_0002659 non-vascular leaf absent http://purl.obolibrary.org/obo/PPO_0002061 non-vascular leaf presence A non-vascular leaf presence trait that is a quality of a whole plant that does not have a non-vascular leaf as part http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that has temporal parts and that happens, unfolds or develops through time. http://purl.obolibrary.org/obo/BFO_0000017 realizable http://purl.obolibrary.org/obo/BFO_0000020 characteristic A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. http://purl.obolibrary.org/obo/IAO_0000007 action specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity that describes an action the bearer will take. http://purl.obolibrary.org/obo/IAO_0000009 datum label http://purl.obolibrary.org/obo/IAO_0000030 information content entity A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label http://purl.obolibrary.org/obo/IAO_0000010 software http://purl.obolibrary.org/obo/IAO_0000104 plan specification Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit. http://purl.obolibrary.org/obo/IAO_0000015 information carrier http://purl.obolibrary.org/obo/BFO_0000019 quality A quality of an information bearer that imparts the information content http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant A generically dependent continuant that is about some thing. http://purl.obolibrary.org/obo/IAO_0000033 directive information entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity whose concretizations indicate to their bearer how to realize them in a process. http://purl.obolibrary.org/obo/IAO_0000037 dot plot http://purl.obolibrary.org/obo/IAO_0000038 graph A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions. http://purl.obolibrary.org/obo/IAO_0000038 graph http://purl.obolibrary.org/obo/IAO_0000309 diagram A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way. http://purl.obolibrary.org/obo/IAO_0000064 algorithm http://purl.obolibrary.org/obo/IAO_0000104 plan specification A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. http://purl.obolibrary.org/obo/IAO_0000078 curation status specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000098 data format specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file http://purl.obolibrary.org/obo/IAO_0000100 data set http://purl.obolibrary.org/obo/IAO_0000027 data item A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets. http://purl.obolibrary.org/obo/IAO_0000101 image http://purl.obolibrary.org/obo/IAO_0000308 figure An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface. http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part http://purl.obolibrary.org/obo/IAO_0000027 data item Data about an ontology part is a data item about a part of an ontology, for example a term http://purl.obolibrary.org/obo/IAO_0000104 plan specification http://purl.obolibrary.org/obo/IAO_0000033 directive information entity A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified. http://purl.obolibrary.org/obo/IAO_0000109 measurement datum http://purl.obolibrary.org/obo/IAO_0000027 data item A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. http://purl.obolibrary.org/obo/IAO_0000178 material information bearer http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity in which a concretization of an information content entity inheres. http://purl.obolibrary.org/obo/IAO_0000179 histogram http://purl.obolibrary.org/obo/IAO_0000038 graph A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes. http://purl.obolibrary.org/obo/IAO_0000180 heatmap http://purl.obolibrary.org/obo/IAO_0000038 graph A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map. http://purl.obolibrary.org/obo/IAO_0000183 dendrogram http://purl.obolibrary.org/obo/IAO_0000038 graph A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm. http://purl.obolibrary.org/obo/IAO_0000225 obsolescence reason specification http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. http://purl.obolibrary.org/obo/IAO_0000308 figure http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something. http://purl.obolibrary.org/obo/IAO_0000309 diagram http://purl.obolibrary.org/obo/IAO_0000308 figure A figure that expresses one or more propositions http://purl.obolibrary.org/obo/IAO_0000310 document http://purl.obolibrary.org/obo/IAO_0000030 information content entity A collection of information content entities intended to be understood together as a whole http://purl.obolibrary.org/obo/IAO_0000409 denotator type http://purl.obolibrary.org/obo/IAO_0000102 data about an ontology part A denotator type indicates how a term should be interpreted from an ontological perspective. http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process A process that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000017 regulatory role http://purl.obolibrary.org/obo/BFO_0000023 role a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body. http://purl.obolibrary.org/obo/OBI_0000112 specimen role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by a material entity that is obtained during a specimen collection process and that can be realized by performing measurements or observations on the specimen. http://purl.obolibrary.org/obo/OBI_0000245 organization http://purl.obolibrary.org/obo/BFO_0000040 material entity An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members. http://purl.obolibrary.org/obo/OBI_0000450 regulatory agency http://purl.obolibrary.org/obo/OBI_0000245 organization A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government. http://purl.obolibrary.org/obo/OBI_0000571 manufacturer role http://purl.obolibrary.org/obo/BFO_0000023 role Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process. http://purl.obolibrary.org/obo/OBI_0000684 specimen collection objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification A objective specification that is fulfilled by obtaining a material entity for potential use as an input upon which measurements or observations are performed. http://purl.obolibrary.org/obo/OBI_0000704 decision tree induction objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made. http://purl.obolibrary.org/obo/OBI_0000707 decision tree building data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation A decision tree building data transformation is a data transformation that has objective decision tree induction. http://purl.obolibrary.org/obo/OBI_0000713 GenePattern software http://purl.obolibrary.org/obo/IAO_0000010 software a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks. http://purl.obolibrary.org/obo/OBI_0000726 peak matching http://purl.obolibrary.org/obo/OBI_0200000 data transformation Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold http://purl.obolibrary.org/obo/OBI_0000792 statistical model validation http://purl.obolibrary.org/obo/OBI_0200171 partitioning data transformation A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set. http://purl.obolibrary.org/obo/OBI_0000835 manufacturer http://purl.obolibrary.org/obo/BFO_0000040 material entity A person or organization that has a manufacturer role. http://purl.obolibrary.org/obo/OBI_0000947 service provider role http://purl.obolibrary.org/obo/BFO_0000023 role is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person http://purl.obolibrary.org/obo/OBI_0000963 categorical label http://purl.obolibrary.org/obo/IAO_0000009 datum label A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale. http://purl.obolibrary.org/obo/OBI_0001000 questionnaire http://purl.obolibrary.org/obo/IAO_0000310 document A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study. http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification http://purl.obolibrary.org/obo/OBI_0001933 value specification A value specification that is specifies one category out of a fixed number of nominal categories http://purl.obolibrary.org/obo/OBI_0001933 value specification http://purl.obolibrary.org/obo/IAO_0000030 information content entity An information content entity that specifies a value within a classification scheme or on a quantitative scale. http://purl.obolibrary.org/obo/OBI_0002076 collection of specimens http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that has two or more specimens as its parts. http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. http://purl.obolibrary.org/obo/OBI_0100051 specimen http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is collected for potential use as an input upon which measurements or observations are performed. http://purl.obolibrary.org/obo/OBI_0200033 leave one out cross validation method http://purl.obolibrary.org/obo/OBI_0000792 statistical model validation is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data http://purl.obolibrary.org/obo/OBI_0200041 k-means clustering http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed). http://purl.obolibrary.org/obo/OBI_0200042 hierarchical clustering http://purl.obolibrary.org/obo/OBI_0200175 class discovery data transformation A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root). http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective http://purl.obolibrary.org/obo/IAO_0000005 objective specification An objective specification to transformation input data into output data http://purl.obolibrary.org/obo/OBI_0200171 partitioning data transformation http://purl.obolibrary.org/obo/OBI_0200000 data transformation A partitioning data transformation is a data transformation that has objective partitioning. http://purl.obolibrary.org/obo/OBI_0200172 partitioning objective http://purl.obolibrary.org/obo/OBI_0200166 data transformation objective A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set. http://purl.obolibrary.org/obo/OBI_0200190 clustered data visualization http://purl.obolibrary.org/obo/OBI_0200111 data visualization A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type. http://purl.obolibrary.org/obo/PPO_0001013 true leaf http://purl.obolibrary.org/obo/PO_0009025 vascular leaf A vascular leaf that is not a cotyledon. http://purl.obolibrary.org/obo/PPO_0001014 unfolding true leaf http://purl.obolibrary.org/obo/PPO_0001022 expanding true leaf An expanding true leaf that is in the vascular leaf unfolding stage. http://purl.obolibrary.org/obo/PPO_0001015 unfolded true leaf http://purl.obolibrary.org/obo/PPO_0001013 true leaf A true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf post-expansion stage or vascular leaf senescent stage. http://purl.obolibrary.org/obo/PPO_0001016 non-senescing unfolded true leaf http://purl.obolibrary.org/obo/PPO_0001015 unfolded true leaf A unfolded true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf post-expansion stage. http://purl.obolibrary.org/obo/PPO_0001017 senescing true leaf http://purl.obolibrary.org/obo/PPO_0001015 unfolded true leaf A unfolded true leaf that is in the vascular leaf senescent stage. http://purl.obolibrary.org/obo/PPO_0001018 immature unfolded true leaf http://purl.obolibrary.org/obo/PPO_0001016 non-senescing unfolded true leaf A non-senescing unfolded true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf expanded immature stage. http://purl.obolibrary.org/obo/PPO_0001019 mature true leaf http://purl.obolibrary.org/obo/PPO_0001016 non-senescing unfolded true leaf A non-senescing unfolded true leaf that is in the vascular leaf mature stage. http://purl.obolibrary.org/obo/PPO_0001020 expanding unfolded true leaf http://purl.obolibrary.org/obo/PPO_0001022 expanding true leaf An expanding true leaf that is in the vascular leaf expanding unfolded stage. http://purl.obolibrary.org/obo/PPO_0001021 expanded immature true leaf http://purl.obolibrary.org/obo/PPO_0001018 immature unfolded true leaf An immature unfolded true leaf that is in the vascular leaf expanded immature stage. http://purl.obolibrary.org/obo/PPO_0001022 expanding true leaf http://purl.obolibrary.org/obo/PPO_0001013 true leaf A true leaf that is in the vascular leaf expansion stage. http://purl.obolibrary.org/obo/PPO_0001023 reproductive structure http://purl.obolibrary.org/obo/PO_0009011 plant structure A plant structure that is either a reproductive shoot system or a fruit. http://purl.obolibrary.org/obo/PPO_0001024 mature seed http://purl.obolibrary.org/obo/PO_0009010 seed A seed that has participated in a seed maturation stage. http://purl.obolibrary.org/obo/PPO_0001031 non-senesced flower http://purl.obolibrary.org/obo/PO_0009046 flower A flower in which all the petaloid floral organs floral organ have not completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers anther. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence. http://purl.obolibrary.org/obo/PPO_0001032 unopened flower http://purl.obolibrary.org/obo/PPO_0001031 non-senesced flower A 'non-senesced flower' that is in the 'unopened flower stage'. http://purl.obolibrary.org/obo/PPO_0001033 open flower http://purl.obolibrary.org/obo/PPO_0001031 non-senesced flower A 'non-senesced flower' that is in the 'open flower stage'. http://purl.obolibrary.org/obo/PPO_0001034 pollen-releasing flower http://purl.obolibrary.org/obo/PPO_0001033 open flower An 'open flower' that is in the 'pollen-releasing flower stage'. http://purl.obolibrary.org/obo/PPO_0001035 senesced flower http://purl.obolibrary.org/obo/PO_0009046 flower A flower in which all of the petaloid floral organs floral organ have completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers anther. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence. http://purl.obolibrary.org/obo/PPO_0001043 ripening fruit http://purl.obolibrary.org/obo/PPO_0001042 simple fruit or compound fruit A simple fruit or compound fruit that is in the fruit ripening stage. http://purl.obolibrary.org/obo/PPO_0002300 plant structure present http://purl.obolibrary.org/obo/PPO_0002001 plant structure presence A plant structure presence trait that is a quality of a whole plant that has at least one plant structure as part http://purl.obolibrary.org/obo/PPO_0002301 new shoot system present http://purl.obolibrary.org/obo/PPO_0002003 new shoot system presence A new shoot system presence trait that is a quality of a whole plant that has at least one new shoot system as part http://purl.obolibrary.org/obo/PPO_0002302 new above-ground shoot-borne shoot system present http://purl.obolibrary.org/obo/PPO_0002004 new above-ground shoot-borne shoot system presence A new above-ground shoot-borne shoot system presence trait that is a quality of a whole plant that has at least one new above-ground shoot-borne shoot system as part http://purl.obolibrary.org/obo/PPO_0002303 new shoot system emerging from ground present http://purl.obolibrary.org/obo/PPO_0002005 new shoot system emerging from ground presence A new shoot system emerging from ground presence trait that is a quality of a whole plant that has at least one new shoot system emerging from ground as part http://purl.obolibrary.org/obo/PPO_0002304 new shoot system emerging from ground in first growth cycle present http://purl.obolibrary.org/obo/PPO_0002006 new shoot system emerging from ground in first growth cycle presence A new shoot system emerging from ground in first growth cycle presence trait that is a quality of a whole plant that has at least one new shoot system emerging from ground in first growth cycle as part http://purl.obolibrary.org/obo/PPO_0002305 seedling present http://purl.obolibrary.org/obo/PPO_0002007 seedling presence A seedling presence trait that is a quality of a whole plant that has at least one seedling as part http://purl.obolibrary.org/obo/PPO_0002306 new shoot system emerging from ground in later growth cycle present http://purl.obolibrary.org/obo/PPO_0002008 new shoot system emerging from ground in later growth cycle presence A new shoot system emerging from ground in later growth cycle presence trait that is a quality of a whole plant that has at least one new shoot system emerging from ground in later growth cycle as part http://purl.obolibrary.org/obo/PPO_0002307 vegetative bud present http://purl.obolibrary.org/obo/PPO_0002009 vegetative bud presence A vegetative bud presence trait that is a quality of a whole plant that has at least one vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002308 dormant vegetative bud present http://purl.obolibrary.org/obo/PPO_0002010 dormant vegetative bud presence A dormant vegetative bud presence trait that is a quality of a whole plant that has at least one dormant vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002309 non-dormant vegetative bud present http://purl.obolibrary.org/obo/PPO_0002011 non-dormant vegetative bud presence A non-dormant vegetative bud presence trait that is a quality of a whole plant that has at least one non-dormant vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002310 swelling vegetative bud present http://purl.obolibrary.org/obo/PPO_0002012 swelling vegetative bud presence A swelling vegetative bud presence trait that is a quality of a whole plant that has at least one swelling vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002311 breaking vegetative bud present http://purl.obolibrary.org/obo/PPO_0002013 breaking vegetative bud presence A breaking vegetative bud presence trait that is a quality of a whole plant that has at least one breaking vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002312 vascular leaf present http://purl.obolibrary.org/obo/PPO_0002014 vascular leaf presence A vascular leaf presence trait that is a quality of a whole plant that has at least one vascular leaf as part http://purl.obolibrary.org/obo/PPO_0002313 true leaf present http://purl.obolibrary.org/obo/PPO_0002015 true leaf presence A true leaf presence trait that is a quality of a whole plant that has at least one true leaf as part http://purl.obolibrary.org/obo/PPO_0002314 unfolding true leaf present http://purl.obolibrary.org/obo/PPO_0002016 unfolding true leaf presence A unfolding true leaf presence trait that is a quality of a whole plant that has at least one unfolding true leaf as part http://purl.obolibrary.org/obo/PPO_0002315 unfolded true leaf present http://purl.obolibrary.org/obo/PPO_0002017 unfolded true leaf presence A unfolded true leaf presence trait that is a quality of a whole plant that has at least one unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002316 non-senescing unfolded true leaf present http://purl.obolibrary.org/obo/PPO_0002018 non-senescing unfolded true leaf presence A non-senescing unfolded true leaf presence trait that is a quality of a whole plant that has at least one non-senescing unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002317 senescing true leaf present http://purl.obolibrary.org/obo/PPO_0002019 senescing true leaf presence A senescing true leaf presence trait that is a quality of a whole plant that has at least one senescing true leaf as part http://purl.obolibrary.org/obo/PPO_0002318 immature unfolded true leaf present http://purl.obolibrary.org/obo/PPO_0002020 immature unfolded true leaf presence A immature unfolded true leaf presence trait that is a quality of a whole plant that has at least one immature unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002319 mature true leaf present http://purl.obolibrary.org/obo/PPO_0002021 mature true leaf presence A mature true leaf presence trait that is a quality of a whole plant that has at least one mature true leaf as part http://purl.obolibrary.org/obo/PPO_0002320 expanding unfolded true leaf present http://purl.obolibrary.org/obo/PPO_0002022 expanding unfolded true leaf presence A expanding unfolded true leaf presence trait that is a quality of a whole plant that has at least one expanding unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002321 expanded immature true leaf present http://purl.obolibrary.org/obo/PPO_0002023 expanded immature true leaf presence A expanded immature true leaf presence trait that is a quality of a whole plant that has at least one expanded immature true leaf as part http://purl.obolibrary.org/obo/PPO_0002322 expanding true leaf present http://purl.obolibrary.org/obo/PPO_0002024 expanding true leaf presence A expanding true leaf presence trait that is a quality of a whole plant that has at least one expanding true leaf as part http://purl.obolibrary.org/obo/PPO_0002323 reproductive structure present http://purl.obolibrary.org/obo/PPO_0002025 reproductive structure presence A reproductive structure presence trait that is a quality of a whole plant that has at least one reproductive structure as part http://purl.obolibrary.org/obo/PPO_0002324 reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A reproductive shoot system presence trait that is a quality of a whole plant that has at least one reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002325 non-senesced reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A non-senesced reproductive shoot system presence trait that is a quality of a whole plant that has at least one non-senesced reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002326 unopened reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A unopened reproductive shoot system presence trait that is a quality of a whole plant that has at least one unopened reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002327 open reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A open reproductive shoot system presence trait that is a quality of a whole plant that has at least one open reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002328 pollen-releasing reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A pollen-releasing reproductive shoot system presence trait that is a quality of a whole plant that has at least one pollen-releasing reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002329 senesced reproductive shoot system present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A senesced reproductive shoot system presence trait that is a quality of a whole plant that has at least one senesced reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002330 flower present http://purl.obolibrary.org/obo/PPO_0002032 flower presence A flower presence trait that is a quality of a whole plant that has at least one flower as part http://purl.obolibrary.org/obo/PPO_0002331 non-senesced flower present http://purl.obolibrary.org/obo/PPO_0002033 non-senesced flower presence A non-senesced flower presence trait that is a quality of a whole plant that has at least one non-senesced flower as part http://purl.obolibrary.org/obo/PPO_0002332 unopened flower present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A unopened flower presence trait that is a quality of a whole plant that has at least one unopened flower as part http://purl.obolibrary.org/obo/PPO_0002333 open flower present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A open flower presence trait that is a quality of a whole plant that has at least one open flower as part http://purl.obolibrary.org/obo/PPO_0002334 pollen-releasing flower present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A pollen-releasing flower presence trait that is a quality of a whole plant that has at least one pollen-releasing flower as part http://purl.obolibrary.org/obo/PPO_0002335 senesced flower present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A senesced flower presence trait that is a quality of a whole plant that has at least one senesced flower as part http://purl.obolibrary.org/obo/PPO_0002336 inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A inflorescence presence trait that is a quality of a whole plant that has at least one inflorescence as part http://purl.obolibrary.org/obo/PPO_0002337 non-senesced inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A non-senesced inflorescence presence trait that is a quality of a whole plant that has at least one non-senesced inflorescence as part http://purl.obolibrary.org/obo/PPO_0002338 unopened inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A unopened inflorescence presence trait that is a quality of a whole plant that has at least one unopened inflorescence as part http://purl.obolibrary.org/obo/PPO_0002339 open inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A open inflorescence presence trait that is a quality of a whole plant that has at least one open inflorescence as part http://purl.obolibrary.org/obo/PPO_0002340 pollen-releasing inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A pollen-releasing inflorescence presence trait that is a quality of a whole plant that has at least one pollen-releasing inflorescence as part http://purl.obolibrary.org/obo/PPO_0002341 senesced inflorescence present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A senesced inflorescence presence trait that is a quality of a whole plant that has at least one senesced inflorescence as part http://purl.obolibrary.org/obo/PPO_0002342 simple fruit or compound fruit present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A simple fruit or compound fruit presence trait that is a quality of a whole plant that has at least one simple fruit or compound fruit as part http://purl.obolibrary.org/obo/PPO_0002343 ripening fruit present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A ripening fruit presence trait that is a quality of a whole plant that has at least one ripening fruit as part http://purl.obolibrary.org/obo/PPO_0002344 unripe fruit present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A unripe fruit presence trait that is a quality of a whole plant that has at least one unripe fruit as part http://purl.obolibrary.org/obo/PPO_0002345 ripe fruit present http://purl.obolibrary.org/obo/PPO_0002047 ripe fruit presence A ripe fruit presence trait that is a quality of a whole plant that has at least one ripe fruit as part http://purl.obolibrary.org/obo/PPO_0002601 new above-ground shoot-borne shoot system absent http://purl.obolibrary.org/obo/PPO_0002004 new above-ground shoot-borne shoot system presence A new above-ground shoot-borne shoot system presence trait that is a quality of a whole plant that does not have a new above-ground shoot-borne shoot system as part http://purl.obolibrary.org/obo/PPO_0002602 new shoot system emerging from ground absent http://purl.obolibrary.org/obo/PPO_0002005 new shoot system emerging from ground presence A new shoot system emerging from ground presence trait that is a quality of a whole plant that does not have a new shoot system emerging from ground as part http://purl.obolibrary.org/obo/PPO_0002603 new shoot system emerging from ground in first growth cycle absent http://purl.obolibrary.org/obo/PPO_0002006 new shoot system emerging from ground in first growth cycle presence A new shoot system emerging from ground in first growth cycle presence trait that is a quality of a whole plant that does not have a new shoot system emerging from ground in first growth cycle as part http://purl.obolibrary.org/obo/PPO_0002604 seedling absent http://purl.obolibrary.org/obo/PPO_0002007 seedling presence A seedling presence trait that is a quality of a whole plant that does not have a seedling as part http://purl.obolibrary.org/obo/PPO_0002605 new shoot system emerging from ground in later growth cycle absent http://purl.obolibrary.org/obo/PPO_0002008 new shoot system emerging from ground in later growth cycle presence A new shoot system emerging from ground in later growth cycle presence trait that is a quality of a whole plant that does not have a new shoot system emerging from ground in later growth cycle as part http://purl.obolibrary.org/obo/PPO_0002606 vegetative bud absent http://purl.obolibrary.org/obo/PPO_0002009 vegetative bud presence A vegetative bud presence trait that is a quality of a whole plant that does not have a vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002607 dormant vegetative bud absent http://purl.obolibrary.org/obo/PPO_0002010 dormant vegetative bud presence A dormant vegetative bud presence trait that is a quality of a whole plant that does not have a dormant vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002608 non-dormant vegetative bud absent http://purl.obolibrary.org/obo/PPO_0002011 non-dormant vegetative bud presence A non-dormant vegetative bud presence trait that is a quality of a whole plant that does not have a non-dormant vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002609 swelling vegetative bud absent http://purl.obolibrary.org/obo/PPO_0002012 swelling vegetative bud presence A swelling vegetative bud presence trait that is a quality of a whole plant that does not have a swelling vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002610 breaking vegetative bud absent http://purl.obolibrary.org/obo/PPO_0002013 breaking vegetative bud presence A breaking vegetative bud presence trait that is a quality of a whole plant that does not have a breaking vegetative bud as part http://purl.obolibrary.org/obo/PPO_0002611 vascular leaf absent http://purl.obolibrary.org/obo/PPO_0002014 vascular leaf presence A vascular leaf presence trait that is a quality of a whole plant that does not have a vascular leaf as part http://purl.obolibrary.org/obo/PPO_0002612 true leaf absent http://purl.obolibrary.org/obo/PPO_0002015 true leaf presence A true leaf presence trait that is a quality of a whole plant that does not have a true leaf as part http://purl.obolibrary.org/obo/PPO_0002613 unfolding true leaf absent http://purl.obolibrary.org/obo/PPO_0002016 unfolding true leaf presence A unfolding true leaf presence trait that is a quality of a whole plant that does not have a unfolding true leaf as part http://purl.obolibrary.org/obo/PPO_0002614 unfolded true leaf absent http://purl.obolibrary.org/obo/PPO_0002017 unfolded true leaf presence A unfolded true leaf presence trait that is a quality of a whole plant that does not have a unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002615 non-senescing unfolded true leaf absent http://purl.obolibrary.org/obo/PPO_0002018 non-senescing unfolded true leaf presence A non-senescing unfolded true leaf presence trait that is a quality of a whole plant that does not have a non-senescing unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002616 senescing true leaf absent http://purl.obolibrary.org/obo/PPO_0002019 senescing true leaf presence A senescing true leaf presence trait that is a quality of a whole plant that does not have a senescing true leaf as part http://purl.obolibrary.org/obo/PPO_0002617 immature unfolded true leaf absent http://purl.obolibrary.org/obo/PPO_0002020 immature unfolded true leaf presence A immature unfolded true leaf presence trait that is a quality of a whole plant that does not have a immature unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002618 mature true leaf absent http://purl.obolibrary.org/obo/PPO_0002021 mature true leaf presence A mature true leaf presence trait that is a quality of a whole plant that does not have a mature true leaf as part http://purl.obolibrary.org/obo/PPO_0002619 expanding unfolded true leaf absent http://purl.obolibrary.org/obo/PPO_0002022 expanding unfolded true leaf presence A expanding unfolded true leaf presence trait that is a quality of a whole plant that does not have a expanding unfolded true leaf as part http://purl.obolibrary.org/obo/PPO_0002620 expanded immature true leaf absent http://purl.obolibrary.org/obo/PPO_0002023 expanded immature true leaf presence A expanded immature true leaf presence trait that is a quality of a whole plant that does not have a expanded immature true leaf as part http://purl.obolibrary.org/obo/PPO_0002621 expanding true leaf absent http://purl.obolibrary.org/obo/PPO_0002024 expanding true leaf presence A expanding true leaf presence trait that is a quality of a whole plant that does not have a expanding true leaf as part http://purl.obolibrary.org/obo/PPO_0002622 reproductive structure absent http://purl.obolibrary.org/obo/PPO_0002025 reproductive structure presence A reproductive structure presence trait that is a quality of a whole plant that does not have a reproductive structure as part http://purl.obolibrary.org/obo/PPO_0002623 reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002026 reproductive shoot system presence A reproductive shoot system presence trait that is a quality of a whole plant that does not have a reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002624 non-senesced reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002027 non-senesced reproductive shoot system presence A non-senesced reproductive shoot system presence trait that is a quality of a whole plant that does not have a non-senesced reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002625 unopened reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002028 unopened reproductive shoot system presence A unopened reproductive shoot system presence trait that is a quality of a whole plant that does not have a unopened reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002626 open reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002029 open reproductive shoot system presence A open reproductive shoot system presence trait that is a quality of a whole plant that does not have a open reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002627 pollen-releasing reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002030 pollen-releasing reproductive shoot system presence A pollen-releasing reproductive shoot system presence trait that is a quality of a whole plant that does not have a pollen-releasing reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002628 senesced reproductive shoot system absent http://purl.obolibrary.org/obo/PPO_0002031 senesced reproductive shoot system presence A senesced reproductive shoot system presence trait that is a quality of a whole plant that does not have a senesced reproductive shoot system as part http://purl.obolibrary.org/obo/PPO_0002629 flower absent http://purl.obolibrary.org/obo/PPO_0002032 flower presence A flower presence trait that is a quality of a whole plant that does not have a flower as part http://purl.obolibrary.org/obo/PPO_0002630 non-senesced flower absent http://purl.obolibrary.org/obo/PPO_0002033 non-senesced flower presence A non-senesced flower presence trait that is a quality of a whole plant that does not have a non-senesced flower as part http://purl.obolibrary.org/obo/PPO_0002631 unopened flower absent http://purl.obolibrary.org/obo/PPO_0002034 unopened flower presence A unopened flower presence trait that is a quality of a whole plant that does not have a unopened flower as part http://purl.obolibrary.org/obo/PPO_0002632 open flower absent http://purl.obolibrary.org/obo/PPO_0002035 open flower presence A open flower presence trait that is a quality of a whole plant that does not have a open flower as part http://purl.obolibrary.org/obo/PPO_0002633 pollen-releasing flower absent http://purl.obolibrary.org/obo/PPO_0002036 pollen-releasing flower presence A pollen-releasing flower presence trait that is a quality of a whole plant that does not have a pollen-releasing flower as part http://purl.obolibrary.org/obo/PPO_0002634 senesced flower absent http://purl.obolibrary.org/obo/PPO_0002037 senesced flower presence A senesced flower presence trait that is a quality of a whole plant that does not have a senesced flower as part http://purl.obolibrary.org/obo/PPO_0002635 inflorescence absent http://purl.obolibrary.org/obo/PPO_0002038 inflorescence presence A inflorescence presence trait that is a quality of a whole plant that does not have a inflorescence as part http://purl.obolibrary.org/obo/PPO_0002636 non-senesced inflorescence absent http://purl.obolibrary.org/obo/PPO_0002039 non-senesced inflorescence presence A non-senesced inflorescence presence trait that is a quality of a whole plant that does not have a non-senesced inflorescence as part http://purl.obolibrary.org/obo/PPO_0002637 unopened inflorescence absent http://purl.obolibrary.org/obo/PPO_0002040 unopened inflorescence presence A unopened inflorescence presence trait that is a quality of a whole plant that does not have a unopened inflorescence as part http://purl.obolibrary.org/obo/PPO_0002638 open inflorescence absent http://purl.obolibrary.org/obo/PPO_0002041 open inflorescence presence A open inflorescence presence trait that is a quality of a whole plant that does not have a open inflorescence as part http://purl.obolibrary.org/obo/PPO_0002639 pollen-releasing inflorescence absent http://purl.obolibrary.org/obo/PPO_0002042 pollen-releasing inflorescence presence A pollen-releasing inflorescence presence trait that is a quality of a whole plant that does not have a pollen-releasing inflorescence as part http://purl.obolibrary.org/obo/PPO_0002640 senesced inflorescence absent http://purl.obolibrary.org/obo/PPO_0002043 senesced inflorescence presence A senesced inflorescence presence trait that is a quality of a whole plant that does not have a senesced inflorescence as part http://purl.obolibrary.org/obo/PPO_0002641 simple fruit or compound fruit absent http://purl.obolibrary.org/obo/PPO_0002044 simple fruit or compound fruit presence A simple fruit or compound fruit presence trait that is a quality of a whole plant that does not have a simple fruit or compound fruit as part http://purl.obolibrary.org/obo/PPO_0002642 ripening fruit absent http://purl.obolibrary.org/obo/PPO_0002045 ripening fruit presence A ripening fruit presence trait that is a quality of a whole plant that does not have a ripening fruit as part http://purl.obolibrary.org/obo/PPO_0002643 unripe fruit absent http://purl.obolibrary.org/obo/PPO_0002046 unripe fruit presence A unripe fruit presence trait that is a quality of a whole plant that does not have a unripe fruit as part http://purl.obolibrary.org/obo/PPO_0002644 ripe fruit absent http://purl.obolibrary.org/obo/PPO_0002047 ripe fruit presence A ripe fruit presence trait that is a quality of a whole plant that does not have a ripe fruit as part http://purl.obolibrary.org/obo/PPO_0002645 strobilus absent http://purl.obolibrary.org/obo/PPO_0002048 strobilus presence A strobilus presence trait that is a quality of a whole plant that does not have a strobilus as part http://purl.obolibrary.org/obo/PPO_0007005 vascular leaf unfolding stage http://purl.obolibrary.org/obo/PO_0001052 vascular leaf expansion stage A vascular leaf expansion stage during which a vascular leaf participates in the process of unfolding. http://purl.obolibrary.org/obo/PPO_0007006 vascular leaf expanding unfolded stage http://purl.obolibrary.org/obo/PO_0001052 vascular leaf expansion stage A vascular leaf expansion stage during which a vascular leaf has completed the process of unfolding but is still expanding in size. http://purl.obolibrary.org/obo/PPO_0007007 vascular leaf expanded immature stage http://purl.obolibrary.org/obo/PO_0001053 vascular leaf post-expansion stage A vascular leaf post-expansion stage during which a vascular leaf has not yet completed the process of maturing. http://purl.obolibrary.org/obo/PPO_0007008 vascular leaf mature stage http://purl.obolibrary.org/obo/PO_0001053 vascular leaf post-expansion stage A vascular leaf post-expansion stage during which a vascular leaf has completed the process of maturing. http://purl.obolibrary.org/obo/PPO_0007009 unopened flower stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage A flower development stage in which a flower has not yet opened. http://purl.obolibrary.org/obo/PPO_0007010 open flower stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage A flower development stage in which a flower has opened. http://purl.obolibrary.org/obo/PPO_0007011 pollen-releasing flower stage http://purl.obolibrary.org/obo/PPO_0007010 open flower stage An open flower stage in which the anthers are releasing pollen. http://purl.obolibrary.org/obo/PPO_0007012 fruit unripe stage http://purl.obolibrary.org/obo/PO_0025502 fruit ripening stage A fruit ripening stage in which the ripening fruit has not yet reached the fruit ripe stage. http://purl.obolibrary.org/obo/PPO_0007013 fruit ripe stage http://purl.obolibrary.org/obo/PO_0025502 fruit ripening stage A fruit ripening stage in which the ripening fruit has completed ripening to the taxon-specific point at which it is widely considered by botanical experts to have seeds $seed that are developed enough to be ready for dispersal, or, in the case of agricultural crops, the point at which the fruit is considered palatable for human consumption. http://purl.obolibrary.org/obo/PPO_0007014 strobilus development stage http://purl.obolibrary.org/obo/PO_0025530 reproductive shoot system development stage A reproductive shoot system development stage that has as primary participant a strobilus. http://purl.obolibrary.org/obo/PPO_0007015 open microsporangiate strobilus stage http://purl.obolibrary.org/obo/PPO_0007020 microsporangiate strobilus ripening stage A microsporangiate strobilus (pollen cone) ripening stage during the pollen cone is open. http://purl.obolibrary.org/obo/PPO_0007016 pollen-releasing microsporangiate strobilus stage http://purl.obolibrary.org/obo/PPO_0007015 open microsporangiate strobilus stage A open microsporangiate strobilus (pollen cone) stage during the pollen cone is releasing pollen. http://purl.obolibrary.org/obo/PPO_0007017 megasporangiate strobilus ripening stage http://purl.obolibrary.org/obo/PPO_0007014 strobilus development stage A strobilus (cone) development that has as primary participant a megasporangiate strobilus (seed cone). http://purl.obolibrary.org/obo/PPO_0007018 megasporangiate strobilus unripe stage http://purl.obolibrary.org/obo/PPO_0007017 megasporangiate strobilus ripening stage A megasporangiate strobilus (seed cone) ripening stage in which the ripening seed cone has not yet reached the megasporangiate strobilus ripe stage. http://purl.obolibrary.org/obo/PPO_0007021 flower bud breaking stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage A flower development stage during which the flower participates in some bud burst stage. http://purl.obolibrary.org/obo/PPO_0007022 inflorescence bud breaking stage http://purl.obolibrary.org/obo/PO_0001083 inflorescence development stage An inflorescence development stage during which the inflorescence participates in some bud burst stage. http://purl.obolibrary.org/obo/PPO_0001003 new shoot system http://purl.obolibrary.org/obo/PO_0025607 vegetative shoot system A vegetative shoot system that does not yet have any unfolded true leaves. http://purl.obolibrary.org/obo/PPO_0002000 plant phenological trait http://purl.obolibrary.org/obo/PATO_0000001 quality A quality of a a whole plant that provides phenologically relevant information about the whole plant. http://purl.obolibrary.org/obo/PPO_0007004 phenology observing process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process that has as input a whole plant and has as output a measurement datum that is a quality datum of some plant phenological trait. http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/BFO_0000015 process A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective. http://purl.obolibrary.org/obo/PPO_0007020 microsporangiate strobilus ripening stage http://purl.obolibrary.org/obo/PPO_0007014 strobilus development stage A strobilus development that has as primary participant a microsporangiate strobilus (pollen cone). http://purl.obolibrary.org/obo/PPO_0001044 unripe fruit http://purl.obolibrary.org/obo/PPO_0001043 ripening fruit A ripening fruit that is in the fruit unripe stage. http://purl.obolibrary.org/obo/PPO_0001045 ripe fruit http://purl.obolibrary.org/obo/PPO_0001043 ripening fruit A ripening fruit that is in the fruit ripe stage. http://purl.obolibrary.org/obo/PPO_0002346 strobilus present http://purl.obolibrary.org/obo/PPO_0002048 strobilus presence A strobilus presence trait that is a quality of a whole plant that has at least one strobilus as part http://purl.obolibrary.org/obo/PPO_0002347 microsporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002049 microsporangiate strobilus presence A microsporangiate strobilus presence trait that is a quality of a whole plant that has at least one microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002348 fresh microsporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002050 fresh microsporangiate strobilus presence A fresh microsporangiate strobilus presence trait that is a quality of a whole plant that has at least one fresh microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002349 open microsporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002051 open microsporangiate strobilus presence A open microsporangiate strobilus presence trait that is a quality of a whole plant that has at least one open microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002350 pollen-releasing microsporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002052 pollen-releasing microsporangiate strobilus presence A pollen-releasing microsporangiate strobilus presence trait that is a quality of a whole plant that has at least one pollen-releasing microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002351 megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002053 megasporangiate strobilus presence A megasporangiate strobilus presence trait that is a quality of a whole plant that has at least one megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002352 fresh megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002054 fresh megasporangiate strobilus presence A fresh megasporangiate strobilus presence trait that is a quality of a whole plant that has at least one fresh megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002353 ripening megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002055 ripening megasporangiate strobilus presence A ripening megasporangiate strobilus presence trait that is a quality of a whole plant that has at least one ripening megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002354 unripe megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002056 unripe megasporangiate strobilus presence A unripe megasporangiate strobilus presence trait that is a quality of a whole plant that has at least one unripe megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002355 ripe megasporangiate strobilus present http://purl.obolibrary.org/obo/PPO_0002300 plant structure present A ripe megasporangiate strobilus presence trait that is a quality of a whole plant that has at least one ripe megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002646 microsporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002049 microsporangiate strobilus presence A microsporangiate strobilus presence trait that is a quality of a whole plant that does not have a microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002647 fresh microsporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002050 fresh microsporangiate strobilus presence A fresh microsporangiate strobilus presence trait that is a quality of a whole plant that does not have a fresh microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002648 open microsporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002051 open microsporangiate strobilus presence A open microsporangiate strobilus presence trait that is a quality of a whole plant that does not have a open microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002649 pollen-releasing microsporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002052 pollen-releasing microsporangiate strobilus presence A pollen-releasing microsporangiate strobilus presence trait that is a quality of a whole plant that does not have a pollen-releasing microsporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002650 megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002053 megasporangiate strobilus presence A megasporangiate strobilus presence trait that is a quality of a whole plant that does not have a megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002651 fresh megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002054 fresh megasporangiate strobilus presence A fresh megasporangiate strobilus presence trait that is a quality of a whole plant that does not have a fresh megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002652 ripening megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002055 ripening megasporangiate strobilus presence A ripening megasporangiate strobilus presence trait that is a quality of a whole plant that does not have a ripening megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002653 unripe megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002056 unripe megasporangiate strobilus presence A unripe megasporangiate strobilus presence trait that is a quality of a whole plant that does not have a unripe megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002654 ripe megasporangiate strobilus absent http://purl.obolibrary.org/obo/PPO_0002057 ripe megasporangiate strobilus presence A ripe megasporangiate strobilus presence trait that is a quality of a whole plant that does not have a ripe megasporangiate strobilus as part http://purl.obolibrary.org/obo/PPO_0002655 abscised plant structure absent http://purl.obolibrary.org/obo/PPO_0002002 abscised plant structure presence An abscised plant structure presence trait that is a quality of a whole plant from which none of some plant structure have been abscised or removed. http://purl.obolibrary.org/obo/PPO_0007019 megasporangiate strobilus ripe stage http://purl.obolibrary.org/obo/PPO_0007017 megasporangiate strobilus ripening stage A megasporangiate strobilus(seed cone) ripening stage in which the ripening seed cone has completed ripening to the taxon-specific point at which it is widely considered by botanical experts to have seeds that are developed enough to be ready for dispersal. http://purl.obolibrary.org/obo/IAO_0000444 publishing process http://purl.obolibrary.org/obo/OBI_0000011 planned process A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free. http://purl.obolibrary.org/obo/OBI_0002205 histologic grade according to AJCC 7th edition http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system. http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor http://purl.obolibrary.org/obo/OBI_0001930 categorical value specification A categorical value specification that is a histologic grade assigned to a ovarian tumor. http://purl.obolibrary.org/obo/OBI_0002216 histologic grade for ovarian tumor according to a two-tier grading system http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors. http://purl.obolibrary.org/obo/OBI_0002219 histologic grade for ovarian tumor according to the World Health Organization http://purl.obolibrary.org/obo/OBI_0002215 histologic grade for ovarian tumor A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO). http://purl.obolibrary.org/obo/OBI_0002648 individual organism specimen http://purl.obolibrary.org/obo/OBI_0100051 specimen A specimen composed of an individual organism to be studied in an investigation. http://purl.obolibrary.org/obo/OBI_0002989 material supplier http://purl.obolibrary.org/obo/BFO_0000040 material entity A person or organization that provides material supplies to other people or organizations. http://purl.obolibrary.org/obo/PO_0025082 reproductive shoot system http://purl.obolibrary.org/obo/PPO_0001023 reproductive structure floral structure http://purl.obolibrary.org/obo/PATO_0001241 physical object quality http://purl.obolibrary.org/obo/PATO_0000001 quality http://purl.obolibrary.org/obo/PATO_0000141 structure http://purl.obolibrary.org/obo/PATO_0000051 morphology http://purl.obolibrary.org/obo/PATO_0010001 disconnected http://purl.obolibrary.org/obo/PATO_0000141 structure http://purl.obolibrary.org/obo/PATO_0000051 morphology http://purl.obolibrary.org/obo/PATO_0001241 physical object quality http://purl.obolibrary.org/obo/PO_0009009 plant embryo http://purl.obolibrary.org/obo/PO_0000003 whole plant http://purl.obolibrary.org/obo/PPO_0001000 herbaceous plant http://purl.obolibrary.org/obo/PO_0000003 whole plant http://purl.obolibrary.org/obo/PPO_0001001 woody plant http://purl.obolibrary.org/obo/PO_0000003 whole plant http://purl.obolibrary.org/obo/PPO_0001002 perennial plant http://purl.obolibrary.org/obo/PO_0000003 whole plant http://purl.obolibrary.org/obo/PPO_0001007 seedling http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0025222 reproductive shoot apex http://purl.obolibrary.org/obo/PO_0000037 shoot axis apex http://purl.obolibrary.org/obo/PO_0025223 vegetative shoot apex http://purl.obolibrary.org/obo/PO_0000037 shoot axis apex http://purl.obolibrary.org/obo/PO_0000058 vegetative bud http://purl.obolibrary.org/obo/PO_0000055 bud http://purl.obolibrary.org/obo/PO_0025084 reproductive bud http://purl.obolibrary.org/obo/PO_0025082 reproductive shoot system http://purl.obolibrary.org/obo/PO_0030026 gametophore bud http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0025502 fruit ripening stage http://purl.obolibrary.org/obo/PO_0001002 fruit development stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0001050 leaf development stage http://purl.obolibrary.org/obo/PO_0004505 fertilized ovule stage http://purl.obolibrary.org/obo/PO_0001170 seed development stage http://purl.obolibrary.org/obo/PO_0004506 developing seed stage http://purl.obolibrary.org/obo/PO_0001170 seed development stage http://purl.obolibrary.org/obo/PO_0007632 seed maturation stage http://purl.obolibrary.org/obo/PO_0001170 seed development stage http://purl.obolibrary.org/obo/PO_0007633 endosperm development stage http://purl.obolibrary.org/obo/PO_0001170 seed development stage http://purl.obolibrary.org/obo/PO_0004011 initial cell http://purl.obolibrary.org/obo/PO_0004010 meristematic cell http://purl.obolibrary.org/obo/PO_0030086 protonema sub-apical initial cell http://purl.obolibrary.org/obo/PO_0004011 initial cell http://purl.obolibrary.org/obo/PO_0009026 sporophyll http://purl.obolibrary.org/obo/PO_0006001 phyllome http://purl.obolibrary.org/obo/PO_0009055 bract http://purl.obolibrary.org/obo/PO_0006001 phyllome http://purl.obolibrary.org/obo/PO_0025034 leaf http://purl.obolibrary.org/obo/PO_0006001 phyllome http://purl.obolibrary.org/obo/PO_0020148 shoot apical meristem http://purl.obolibrary.org/obo/PO_0020144 apical meristem http://purl.obolibrary.org/obo/PO_0025337 life of whole plant stage http://purl.obolibrary.org/obo/PO_0007033 whole plant development stage http://purl.obolibrary.org/obo/PO_0028002 sporophyte development stage http://purl.obolibrary.org/obo/PO_0007033 whole plant development stage http://purl.obolibrary.org/obo/PO_0028003 gametophyte development stage http://purl.obolibrary.org/obo/PO_0007033 whole plant development stage http://purl.obolibrary.org/obo/PO_0007016 whole plant flowering stage http://purl.obolibrary.org/obo/PO_0007130 sporophyte reproductive stage http://purl.obolibrary.org/obo/PO_0007057 seed germination stage http://purl.obolibrary.org/obo/PO_0007134 sporophyte vegetative stage http://purl.obolibrary.org/obo/PO_0007616 flowering stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage http://purl.obolibrary.org/obo/PO_0025588 flower meristem transition stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage http://purl.obolibrary.org/obo/PO_0000229 flower meristem http://purl.obolibrary.org/obo/PO_0008028 reproductive shoot apical meristem http://purl.obolibrary.org/obo/PO_0025606 native plant cell http://purl.obolibrary.org/obo/PO_0009002 plant cell http://purl.obolibrary.org/obo/PO_0000055 bud http://purl.obolibrary.org/obo/PO_0009006 shoot system http://purl.obolibrary.org/obo/PO_0004545 shoot-borne shoot system http://purl.obolibrary.org/obo/PO_0009006 shoot system http://purl.obolibrary.org/obo/PO_0025607 vegetative shoot system http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0030018 gametophore http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0009007 portion of plant tissue http://purl.obolibrary.org/obo/PO_0025233 portion of embryo plant tissue http://purl.obolibrary.org/obo/PO_0025099 embryo plant structure http://purl.obolibrary.org/obo/PO_0006001 phyllome http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0020003 plant ovule http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0025004 plant axis http://purl.obolibrary.org/obo/PO_0009008 plant organ http://purl.obolibrary.org/obo/PO_0025094 sporangium http://purl.obolibrary.org/obo/PO_0009008 plant organ http://purl.obolibrary.org/obo/PO_0025395 floral organ http://purl.obolibrary.org/obo/PO_0009008 plant organ http://purl.obolibrary.org/obo/PO_0000003 whole plant http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0009002 plant cell http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0009007 portion of plant tissue http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0025099 embryo plant structure http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0025496 multi-tissue plant structure http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0025497 collective plant structure http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0007033 whole plant development stage http://purl.obolibrary.org/obo/PO_0009012 plant structure development stage http://purl.obolibrary.org/obo/PO_0025338 collective plant organ structure development stage http://purl.obolibrary.org/obo/PO_0009012 plant structure development stage http://purl.obolibrary.org/obo/PO_0025571 multi-tissue plant structure development stage http://purl.obolibrary.org/obo/PO_0009012 plant structure development stage http://purl.obolibrary.org/obo/PO_0000225 peripheral zone http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0006079 shoot system meristem http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0006210 protoderm http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0020144 apical meristem http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0025127 primordium http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0025430 phyllome anlagen http://purl.obolibrary.org/obo/PO_0009013 portion of meristem tissue http://purl.obolibrary.org/obo/PO_0020030 cotyledon http://purl.obolibrary.org/obo/PO_0009025 vascular leaf http://purl.obolibrary.org/obo/PO_0009028 microsporophyll http://purl.obolibrary.org/obo/PO_0009026 sporophyll http://purl.obolibrary.org/obo/PO_0009029 stamen http://purl.obolibrary.org/obo/PO_0025395 floral organ http://purl.obolibrary.org/obo/PO_0009037 lemma http://purl.obolibrary.org/obo/PO_0009034 flower bract http://purl.obolibrary.org/obo/PO_0009038 palea http://purl.obolibrary.org/obo/PO_0009034 flower bract http://purl.obolibrary.org/obo/PO_0009082 spikelet floret http://purl.obolibrary.org/obo/PO_0009046 flower http://purl.obolibrary.org/obo/PO_0025599 pistillate flower http://purl.obolibrary.org/obo/PO_0009046 flower http://purl.obolibrary.org/obo/PO_0025600 staminate flower http://purl.obolibrary.org/obo/PO_0009046 flower http://purl.obolibrary.org/obo/PO_0009039 glume http://purl.obolibrary.org/obo/PO_0009054 inflorescence bract http://purl.obolibrary.org/obo/PO_0009034 flower bract http://purl.obolibrary.org/obo/PO_0025395 floral organ http://purl.obolibrary.org/obo/PO_0009054 inflorescence bract http://purl.obolibrary.org/obo/PO_0009055 bract http://purl.obolibrary.org/obo/PO_0008016 vegetative shoot apical meristem http://purl.obolibrary.org/obo/PO_0020148 shoot apical meristem http://purl.obolibrary.org/obo/PO_0008028 reproductive shoot apical meristem http://purl.obolibrary.org/obo/PO_0020148 shoot apical meristem http://purl.obolibrary.org/obo/PO_0025029 shoot axis http://purl.obolibrary.org/obo/PO_0025004 plant axis http://purl.obolibrary.org/obo/PO_0009006 shoot system http://purl.obolibrary.org/obo/PO_0025007 collective plant organ structure http://purl.obolibrary.org/obo/PO_0009066 anther http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0025023 collective phyllome structure http://purl.obolibrary.org/obo/PO_0025007 collective plant organ structure http://purl.obolibrary.org/obo/PO_0009061 androecium http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0009062 gynoecium http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0000037 shoot axis apex http://purl.obolibrary.org/obo/PO_0025029 shoot axis http://purl.obolibrary.org/obo/PO_0030020 gametophore axis http://purl.obolibrary.org/obo/PO_0025029 shoot axis http://purl.obolibrary.org/obo/PO_0009025 vascular leaf http://purl.obolibrary.org/obo/PO_0025034 leaf http://purl.obolibrary.org/obo/PO_0025075 non-vascular leaf http://purl.obolibrary.org/obo/PO_0025034 leaf http://purl.obolibrary.org/obo/PO_0009046 flower http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0009049 inflorescence http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0009051 spikelet http://purl.obolibrary.org/obo/PO_0025082 reproductive shoot system http://purl.obolibrary.org/obo/PO_0025083 strobilus http://purl.obolibrary.org/obo/PO_0025082 reproductive shoot system http://purl.obolibrary.org/obo/PO_0005031 microsporangiate strobilus http://purl.obolibrary.org/obo/PO_0025083 strobilus http://purl.obolibrary.org/obo/PO_0005032 megasporangiate strobilus http://purl.obolibrary.org/obo/PO_0025083 strobilus http://purl.obolibrary.org/obo/PO_0000056 flower bud http://purl.obolibrary.org/obo/PO_0025084 reproductive bud http://purl.obolibrary.org/obo/PO_0000057 inflorescence bud http://purl.obolibrary.org/obo/PO_0025084 reproductive bud http://purl.obolibrary.org/obo/PO_0025202 microsporangium http://purl.obolibrary.org/obo/PO_0025094 sporangium http://purl.obolibrary.org/obo/PO_0025028 embryo plant cell http://purl.obolibrary.org/obo/PO_0025606 native plant cell http://purl.obolibrary.org/obo/PO_0025128 phyllome primordium http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0025127 primordium http://purl.obolibrary.org/obo/PO_0000015 cotyledon primordium http://purl.obolibrary.org/obo/PO_0025128 phyllome primordium http://purl.obolibrary.org/obo/PO_0000017 vascular leaf primordium http://purl.obolibrary.org/obo/PO_0025128 phyllome primordium http://purl.obolibrary.org/obo/PO_0004705 stamen primordium http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0025487 bract primordium http://purl.obolibrary.org/obo/PO_0025128 phyllome primordium http://purl.obolibrary.org/obo/PO_0009011 plant structure http://purl.obolibrary.org/obo/PO_0025131 plant anatomical entity http://purl.obolibrary.org/obo/PO_0025277 pollen sac http://purl.obolibrary.org/obo/PO_0025202 microsporangium http://purl.obolibrary.org/obo/PO_0025432 cotyledon anlagen http://purl.obolibrary.org/obo/PO_0025430 phyllome anlagen http://purl.obolibrary.org/obo/PO_0025527 shoot system development stage http://purl.obolibrary.org/obo/PO_0025338 collective plant organ structure development stage http://purl.obolibrary.org/obo/PO_0025579 phyllome development stage http://purl.obolibrary.org/obo/PO_0025339 plant organ development stage http://purl.obolibrary.org/obo/PO_0025585 floral organ formation stage http://purl.obolibrary.org/obo/PO_0025339 plant organ development stage http://purl.obolibrary.org/obo/PO_0025431 vascular leaf anlagen http://purl.obolibrary.org/obo/PO_0025430 phyllome anlagen http://purl.obolibrary.org/obo/PO_0025482 bract anlagen http://purl.obolibrary.org/obo/PO_0025430 phyllome anlagen http://purl.obolibrary.org/obo/PO_0025486 stamen anlagen http://purl.obolibrary.org/obo/PO_0025430 phyllome anlagen http://purl.obolibrary.org/obo/PO_0000018 ovule primordium http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0000019 gynoecium primordium http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0006089 anther primordium http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0025478 androecium primordium http://purl.obolibrary.org/obo/PO_0025477 floral organ primordium http://purl.obolibrary.org/obo/PO_0025488 flower bract primordium http://purl.obolibrary.org/obo/PO_0025487 bract primordium http://purl.obolibrary.org/obo/PO_0025489 inflorescence bract primordium http://purl.obolibrary.org/obo/PO_0025487 bract primordium http://purl.obolibrary.org/obo/PO_0009001 fruit http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PO_0009008 plant organ http://purl.obolibrary.org/obo/PO_0025496 multi-tissue plant structure http://purl.obolibrary.org/obo/PO_0009010 seed http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/PPO_0001041 compound fruit http://purl.obolibrary.org/obo/PPO_0001042 simple fruit or compound fruit http://purl.obolibrary.org/obo/PO_0025007 collective plant organ structure http://purl.obolibrary.org/obo/PO_0025497 collective plant structure http://purl.obolibrary.org/obo/PO_0025528 bud development stage http://purl.obolibrary.org/obo/PO_0025527 shoot system development stage http://purl.obolibrary.org/obo/PO_0025530 reproductive shoot system development stage http://purl.obolibrary.org/obo/PO_0025527 shoot system development stage http://purl.obolibrary.org/obo/PO_0025532 bud burst stage http://purl.obolibrary.org/obo/PO_0025527 shoot system development stage http://purl.obolibrary.org/obo/PO_0025531 bud swell stage http://purl.obolibrary.org/obo/PO_0025528 bud development stage http://purl.obolibrary.org/obo/PO_0001083 inflorescence development stage http://purl.obolibrary.org/obo/PO_0025530 reproductive shoot system development stage http://purl.obolibrary.org/obo/PO_0007615 flower development stage http://purl.obolibrary.org/obo/PO_0025530 reproductive shoot system development stage http://purl.obolibrary.org/obo/PO_0001051 vascular leaf initiation stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0001052 vascular leaf expansion stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0001053 vascular leaf post-expansion stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0001054 vascular leaf senescent stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0025574 vascular leaf differentiation stage http://purl.obolibrary.org/obo/PO_0025570 vascular leaf development stage http://purl.obolibrary.org/obo/PO_0001002 fruit development stage http://purl.obolibrary.org/obo/PO_0025571 multi-tissue plant structure development stage http://purl.obolibrary.org/obo/PO_0001170 seed development stage http://purl.obolibrary.org/obo/PO_0025571 multi-tissue plant structure development stage http://purl.obolibrary.org/obo/PO_0025339 plant organ development stage http://purl.obolibrary.org/obo/PO_0025571 multi-tissue plant structure development stage http://purl.obolibrary.org/obo/PO_0001050 leaf development stage http://purl.obolibrary.org/obo/PO_0025579 phyllome development stage http://purl.obolibrary.org/obo/PO_0004010 meristematic cell http://purl.obolibrary.org/obo/PO_0025606 native plant cell http://purl.obolibrary.org/obo/PO_0001097 plant zygote stage http://purl.obolibrary.org/obo/PO_0028002 sporophyte development stage http://purl.obolibrary.org/obo/PO_0007130 sporophyte reproductive stage http://purl.obolibrary.org/obo/PO_0028002 sporophyte development stage http://purl.obolibrary.org/obo/PO_0007134 sporophyte vegetative stage http://purl.obolibrary.org/obo/PO_0028002 sporophyte development stage http://purl.obolibrary.org/obo/PO_0030083 gametophore bud initial cell http://purl.obolibrary.org/obo/PO_0030086 protonema sub-apical initial cell http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000020 characteristic http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/UBERON_0000000 processual entity http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/PO_0009012 plant structure development stage http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/GO_0003674 gene product or complex activity http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable http://purl.obolibrary.org/obo/PATO_0000001 quality http://purl.obolibrary.org/obo/BFO_0000020 characteristic http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 characteristic http://purl.obolibrary.org/obo/PO_0025131 plant anatomical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/UBERON_0001062 anatomical entity http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/NCBITaxon_131567 cellular organisms http://purl.obolibrary.org/obo/GO_0010117 photoprotection http://purl.obolibrary.org/obo/GO_0009416 response to light stimulus http://purl.obolibrary.org/obo/GO_0009314 response to radiation http://purl.obolibrary.org/obo/GO_0009628 response to abiotic stimulus http://purl.obolibrary.org/obo/GO_0009628 response to abiotic stimulus http://purl.obolibrary.org/obo/GO_0050896 response to stimulus http://purl.obolibrary.org/obo/NCBITaxon_131567 cellular organisms http://purl.obolibrary.org/obo/NCBITaxon_1 root http://purl.obolibrary.org/obo/NCBITaxon_33090 Viridiplantae http://purl.obolibrary.org/obo/NCBITaxon_2759 Eukaryota http://purl.obolibrary.org/obo/UBERON_0000104 life cycle http://purl.obolibrary.org/obo/UBERON_0000000 processual entity http://purl.obolibrary.org/obo/UBERON_0000105 life cycle stage http://purl.obolibrary.org/obo/UBERON_0000000 processual entity http://purl.obolibrary.org/obo/UBERON_0000071 death stage http://purl.obolibrary.org/obo/UBERON_0000105 life cycle stage http://purl.obolibrary.org/obo/UBERON_0000061 anatomical structure http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/UBERON_0034923 disconnected anatomical group http://purl.obolibrary.org/obo/UBERON_0000465 material anatomical entity http://purl.obolibrary.org/obo/UBERON_0000477 anatomical cluster http://purl.obolibrary.org/obo/UBERON_0034923 disconnected anatomical group http://purl.obolibrary.org/obo/PPO_0001004 new above-ground shoot-borne shoot system http://purl.obolibrary.org/obo/PPO_0001003 new shoot system http://purl.obolibrary.org/obo/PPO_0001005 new shoot system emerging from ground http://purl.obolibrary.org/obo/PPO_0001003 new shoot system http://purl.obolibrary.org/obo/PPO_0001008 new shoot system emerging from ground in later growth cycle http://purl.obolibrary.org/obo/PPO_0001005 new shoot system emerging from ground http://purl.obolibrary.org/obo/PPO_0001006 new shoot system emerging from ground in first growth cycle http://purl.obolibrary.org/obo/PPO_0001005 new shoot system emerging from ground http://purl.obolibrary.org/obo/GO_0048608 reproductive structure development http://purl.obolibrary.org/obo/GO_0048856 anatomical structure development http://purl.obolibrary.org/obo/GO_0048437 floral organ development http://purl.obolibrary.org/obo/GO_0099402 plant organ development http://purl.obolibrary.org/obo/GO_0003824 catalytic activity http://purl.obolibrary.org/obo/GO_0003674 gene product or complex activity http://purl.obolibrary.org/obo/GO_0016740 transferase activity http://purl.obolibrary.org/obo/GO_0003824 catalytic activity http://purl.obolibrary.org/obo/GO_0050896 response to stimulus http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/GO_0022414 reproductive process http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/GO_0032501 multicellular organismal process http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/GO_0090351 seedling development http://purl.obolibrary.org/obo/GO_0009791 post-embryonic development http://purl.obolibrary.org/obo/GO_0090567 reproductive shoot system development http://purl.obolibrary.org/obo/GO_0048367 shoot system development http://purl.obolibrary.org/obo/GO_0016772 transferase activity, transferring phosphorus-containing groups http://purl.obolibrary.org/obo/GO_0016740 transferase activity http://purl.obolibrary.org/obo/GO_0003006 developmental process involved in reproduction http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0007275 multicellular organism development http://purl.obolibrary.org/obo/GO_0048856 anatomical structure development http://purl.obolibrary.org/obo/GO_0009791 post-embryonic development http://purl.obolibrary.org/obo/GO_0032501 multicellular organismal process http://purl.obolibrary.org/obo/GO_0097207 bud dormancy process http://purl.obolibrary.org/obo/GO_0022611 dormancy process http://purl.obolibrary.org/obo/GO_0009845 seed germination http://purl.obolibrary.org/obo/GO_0032501 multicellular organismal process http://purl.obolibrary.org/obo/GO_0048856 anatomical structure development http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0009838 abscission http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0022611 dormancy process http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0090693 plant organ senescence http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0061458 reproductive system development http://purl.obolibrary.org/obo/GO_0048731 system development http://purl.obolibrary.org/obo/GO_0048367 shoot system development http://purl.obolibrary.org/obo/GO_0048731 system development http://purl.obolibrary.org/obo/GO_0048731 system development http://purl.obolibrary.org/obo/GO_0048856 anatomical structure development http://purl.obolibrary.org/obo/GO_0099402 plant organ development http://purl.obolibrary.org/obo/GO_0048856 anatomical structure development http://purl.obolibrary.org/obo/GO_0009416 response to light stimulus http://purl.obolibrary.org/obo/GO_0009314 response to radiation http://purl.obolibrary.org/obo/GO_0060866 leaf abscission http://purl.obolibrary.org/obo/GO_0009838 abscission http://purl.obolibrary.org/obo/GO_0016301 kinase activity http://purl.obolibrary.org/obo/GO_0016772 transferase activity, transferring phosphorus-containing groups http://purl.obolibrary.org/obo/GO_0097438 exit from dormancy http://purl.obolibrary.org/obo/GO_0022611 dormancy process http://purl.obolibrary.org/obo/GO_0097436 entry into dormancy http://purl.obolibrary.org/obo/GO_0022611 dormancy process http://purl.obolibrary.org/obo/GO_0009908 flower development http://purl.obolibrary.org/obo/GO_0090567 reproductive shoot system development http://purl.obolibrary.org/obo/GO_0080187 floral organ senescence http://purl.obolibrary.org/obo/GO_0090693 plant organ senescence http://purl.obolibrary.org/obo/PPO_0007000 plant growth cycle A whole plant development stage that begins with seed germination or exit from dormancy, ends with death or entry into dormancy, and during which the participant plant is not dormant. http://purl.obolibrary.org/obo/PPO_0007001 initial growth cycle A plant growth cycle that begins with seed germination. http://purl.obolibrary.org/obo/PPO_0007002 later growth cycle A plant growth cycle that begins with exit from dormancy of the participating plant. This cycle cannot begin with the exit from dormancy of a seed. http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/PPO_0001025 floral structure http://purl.obolibrary.org/obo/PPO_0001042 simple fruit or compound fruit http://purl.obolibrary.org/obo/PPO_0007003 plant regreening process http://purl.obolibrary.org/obo/NCBITaxon_1 root http://purl.obolibrary.org/obo/RO_0000052 characteristic of http://purl.obolibrary.org/obo/RO_0002314 characteristic of part of inheres_in a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. http://purl.obolibrary.org/obo/RO_0000079 function of http://purl.obolibrary.org/obo/RO_0000052 characteristic of is function of a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000080 quality of http://purl.obolibrary.org/obo/RO_0000052 characteristic of quality_of a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000085 has function http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_function a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000086 has quality http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_quality a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002350 member of http://purl.obolibrary.org/obo/BFO_0000050 part of member part of is member of is a mereological relation between a item and a collection. http://purl.obolibrary.org/obo/RO_0000087 has role http://purl.obolibrary.org/obo/RO_0000053 has characteristic has_role a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002327 enables http://purl.obolibrary.org/obo/RO_0002215 capable of is executing c enables p iff c is capable of p and c acts to execute p. http://purl.obolibrary.org/obo/RO_0002409 indirectly negatively regulates http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates indirectly inhibits p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q. http://purl.obolibrary.org/obo/RO_0002436 molecularly interacts with http://purl.obolibrary.org/obo/RO_0002434 interacts with molecularly binds with An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. http://purl.obolibrary.org/obo/RO_0002449 directly negatively regulates activity of http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of directly inhibits The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. http://purl.obolibrary.org/obo/RO_0000081 role of http://purl.obolibrary.org/obo/RO_0000052 characteristic of role_of a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002233 has input http://purl.obolibrary.org/obo/RO_0000057 has participant consumes p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. http://purl.obolibrary.org/obo/RO_0002314 characteristic of part of http://purl.obolibrary.org/obo/RO_0002502 depends on inheres in part of q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. http://purl.obolibrary.org/obo/RO_0002215 capable of http://purl.obolibrary.org/obo/RO_0002216 capable of part of has function realized in A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. http://purl.obolibrary.org/obo/RO_0002331 involved in http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of enables part of c involved_in p if and only if c enables some process p', and p' is part of p http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of http://purl.obolibrary.org/obo/RO_0002500 causal agent in process involved in or reguates c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p http://purl.obolibrary.org/obo/RO_0002216 capable of part of http://purl.obolibrary.org/obo/RO_0002500 causal agent in process has function in c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. http://purl.obolibrary.org/obo/RO_0002329 part of structure that is capable of http://purl.obolibrary.org/obo/RO_0002328 functionally related to 0 this relation holds between c and p when c is part of some c', and c' is capable of p. http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes influences (processual) p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. http://purl.obolibrary.org/obo/RO_0002230 ends with http://purl.obolibrary.org/obo/RO_0002222 temporally related to finished by x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0002407 indirectly positively regulates http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates indirectly activates p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q. http://purl.obolibrary.org/obo/RO_0002450 directly positively regulates activity of http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of directly activates The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. http://purl.obolibrary.org/obo/RO_0002160 only in taxon http://purl.obolibrary.org/obo/RO_0002162 in taxon x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z. http://purl.obolibrary.org/obo/RO_0002258 developmentally preceded by http://purl.obolibrary.org/obo/RO_0002324 developmentally related to Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p http://purl.obolibrary.org/obo/RO_0002162 in taxon http://purl.obolibrary.org/obo/RO_0002320 evolutionarily related to x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed. http://purl.obolibrary.org/obo/RO_0002286 developmentally succeeded by http://purl.obolibrary.org/obo/RO_0002384 has developmental potential involving Inverse of developmentally preceded by http://purl.obolibrary.org/obo/RO_0002384 has developmental potential involving http://purl.obolibrary.org/obo/RO_0002324 developmentally related to x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). http://purl.obolibrary.org/obo/RO_0002388 has potential to directly develop into http://purl.obolibrary.org/obo/RO_0002387 has potential to develop into x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y http://purl.obolibrary.org/obo/BFO_0000063 precedes http://purl.obolibrary.org/obo/RO_0002222 temporally related to x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/OBI_0000293 has specified input http://purl.obolibrary.org/obo/RO_0000057 has participant The inverse property of is specified input of http://purl.obolibrary.org/obo/OBI_0000295 is specified input of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000299 has specified output http://purl.obolibrary.org/obo/RO_0000057 has participant The inverse property of is specified output of http://purl.obolibrary.org/obo/OBI_0000312 is specified output of http://purl.obolibrary.org/obo/RO_0000056 participates in A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/RO_0002351 has member http://purl.obolibrary.org/obo/BFO_0000051 has part has member is a mereological relation between a collection and an item. http://purl.obolibrary.org/obo/RO_0002018 has component process http://purl.obolibrary.org/obo/RO_0002180 has component w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic http://purl.obolibrary.org/obo/RO_0002410 causally related to A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0019001 positively regulates characteristic http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0019002 negatively regulates characteristic http://purl.obolibrary.org/obo/RO_0019000 regulates characteristic A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. http://purl.obolibrary.org/obo/RO_0002202 develops from http://purl.obolibrary.org/obo/RO_0002254 has developmental contribution from x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y http://purl.obolibrary.org/obo/BFO_0000051 has part http://purl.obolibrary.org/obo/RO_0002131 overlaps a core relation that holds between a whole and its part http://purl.obolibrary.org/obo/RO_0002333 enabled by http://purl.obolibrary.org/obo/RO_0002328 functionally related to inverse of enables http://purl.obolibrary.org/obo/RO_0002404 causally downstream of http://purl.obolibrary.org/obo/RO_0002427 causally downstream of or within inverse of upstream of http://purl.obolibrary.org/obo/RO_0002412 immediately causally upstream of http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q. http://purl.obolibrary.org/obo/RO_0002448 directly regulates activity of http://purl.obolibrary.org/obo/RO_0011002 regulates activity of The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B. http://purl.obolibrary.org/obo/RO_0002566 causally influences http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size). http://purl.obolibrary.org/obo/PPO_0000007 quality datum of http://purl.obolibrary.org/obo/IAO_0000136 is about Relates an IAO:data item to a PATO:quality. http://purl.obolibrary.org/obo/RO_0002263 acts upstream of http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. http://purl.obolibrary.org/obo/RO_0002304 causally upstream of, positive effect http://purl.obolibrary.org/obo/RO_0004047 causally upstream of or within, positive effect p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q. http://purl.obolibrary.org/obo/RO_0002305 causally upstream of, negative effect http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q. http://purl.obolibrary.org/obo/RO_0002131 overlaps http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to x overlaps y if and only if there exists some z such that x has part z and z part of y http://purl.obolibrary.org/obo/RO_0002254 has developmental contribution from http://purl.obolibrary.org/obo/RO_0002258 developmentally preceded by x has developmental contribution from y iff x has some part z such that z develops from y http://purl.obolibrary.org/obo/RO_0002497 existence ends during or before http://purl.obolibrary.org/obo/RO_0002487 relation between physical entity and a process or stage x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends. http://purl.obolibrary.org/obo/RO_0000091 has disposition http://purl.obolibrary.org/obo/RO_0000053 has characteristic a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000092 disposition of http://purl.obolibrary.org/obo/RO_0000052 characteristic of inverse of has disposition http://purl.obolibrary.org/obo/RO_0011002 regulates activity of http://purl.obolibrary.org/obo/RO_0002566 causally influences The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B. http://purl.obolibrary.org/obo/BFO_0000062 preceded by http://purl.obolibrary.org/obo/RO_0002086 ends after x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. http://purl.obolibrary.org/obo/RO_0002411 causally upstream of http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q. http://purl.obolibrary.org/obo/BFO_0000050 part of http://purl.obolibrary.org/obo/RO_0002131 overlaps a core relation that holds between a part and its whole http://purl.obolibrary.org/obo/RO_0002211 regulates http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q. http://purl.obolibrary.org/obo/RO_0002212 negatively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q. http://purl.obolibrary.org/obo/RO_0002213 positively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q. http://purl.obolibrary.org/obo/RO_0002180 has component http://purl.obolibrary.org/obo/BFO_0000051 has part w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. http://purl.obolibrary.org/obo/RO_0002352 input of http://purl.obolibrary.org/obo/RO_0002328 functionally related to inverse of has input http://purl.obolibrary.org/obo/RO_0002473 composed primarily of http://purl.obolibrary.org/obo/BFO_0000051 has part x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. http://purl.obolibrary.org/obo/RO_0002203 develops into http://purl.obolibrary.org/obo/RO_0002387 has potential to develop into inverse of develops from http://purl.obolibrary.org/obo/RO_0002387 has potential to develop into http://purl.obolibrary.org/obo/RO_0002384 has developmental potential involving x has the potential to develop into y iff x develops into y or if x is capable of developing into y http://purl.obolibrary.org/obo/RO_0012011 indirectly causally upstream of http://purl.obolibrary.org/obo/RO_0002411 causally upstream of p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q. http://purl.obolibrary.org/obo/RO_0012012 indirectly regulates http://purl.obolibrary.org/obo/RO_0012011 indirectly causally upstream of p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q. http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0002500 causal agent in process c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. http://purl.obolibrary.org/obo/RO_0004031 enables subfunction http://purl.obolibrary.org/obo/RO_0002328 functionally related to Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. http://purl.obolibrary.org/obo/RO_0004034 acts upstream of, positive effect http://purl.obolibrary.org/obo/RO_0004032 acts upstream of or within, positive effect c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive http://purl.obolibrary.org/obo/RO_0004035 acts upstream of, negative effect http://purl.obolibrary.org/obo/RO_0004033 acts upstream of or within, negative effect c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative http://purl.obolibrary.org/obo/RO_0002255 developmentally contributes to http://purl.obolibrary.org/obo/RO_0002385 has potential to developmentally contribute to inverse of has developmental contribution from http://purl.obolibrary.org/obo/RO_0002334 regulated by http://purl.obolibrary.org/obo/RO_0002427 causally downstream of or within inverse of regulates http://purl.obolibrary.org/obo/RO_0002335 negatively regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by inverse of negatively regulates http://purl.obolibrary.org/obo/RO_0002336 positively regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by inverse of positively regulates http://purl.obolibrary.org/obo/RO_0002385 has potential to developmentally contribute to http://purl.obolibrary.org/obo/RO_0002384 has developmental potential involving x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y http://purl.obolibrary.org/obo/RO_0002427 causally downstream of or within http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes inverse of causally upstream of or within http://purl.obolibrary.org/obo/RO_0002500 causal agent in process http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process A relationship between a material entity and a process where the material entity has some causal role that influences the process http://purl.obolibrary.org/obo/RO_0002501 causal relation between processes http://purl.obolibrary.org/obo/RO_0002410 causally related to p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. http://purl.obolibrary.org/obo/RO_0002584 has part structure that is capable of http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p http://purl.obolibrary.org/obo/RO_0002595 causal relation between material entity and a process http://purl.obolibrary.org/obo/RO_0002410 causally related to A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. http://purl.obolibrary.org/obo/RO_0002596 capable of regulating http://purl.obolibrary.org/obo/RO_0002500 causal agent in process Holds between c and p if and only if c is capable of some activity a, and a regulates p. http://purl.obolibrary.org/obo/RO_0002597 capable of negatively regulating http://purl.obolibrary.org/obo/RO_0002596 capable of regulating Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. http://purl.obolibrary.org/obo/RO_0002598 capable of positively regulating http://purl.obolibrary.org/obo/RO_0002596 capable of regulating Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. http://purl.obolibrary.org/obo/RO_0002608 process has causal agent http://purl.obolibrary.org/obo/RO_0002410 causally related to Inverse of 'causal agent in process' http://purl.obolibrary.org/obo/RO_0002015 has positive regulatory component activity http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity http://purl.obolibrary.org/obo/RO_0002017 has component activity A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. http://purl.obolibrary.org/obo/RO_0002014 has negative regulatory component activity http://purl.obolibrary.org/obo/RO_0002013 has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. http://purl.obolibrary.org/obo/RO_0002229 ends http://purl.obolibrary.org/obo/BFO_0000050 part of inverse of ends with http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of http://purl.obolibrary.org/obo/RO_0002431 involved in or involved in regulation of c involved in regulation of p if c is involved in some p' and p' regulates some p http://purl.obolibrary.org/obo/RO_0002429 involved in positive regulation of http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of c involved in regulation of p if c is involved in some p' and p' positively regulates some p http://purl.obolibrary.org/obo/RO_0002430 involved in negative regulation of http://purl.obolibrary.org/obo/RO_0002428 involved in regulation of c involved in regulation of p if c is involved in some p' and p' negatively regulates some p http://purl.obolibrary.org/obo/RO_0002578 directly regulates http://purl.obolibrary.org/obo/RO_0002211 regulates p directly regulates q iff p is immediately causally upstream of q and p regulates q. http://purl.obolibrary.org/obo/RO_0002629 directly positively regulates http://purl.obolibrary.org/obo/RO_0002578 directly regulates p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q. http://purl.obolibrary.org/obo/RO_0002630 directly negatively regulates http://purl.obolibrary.org/obo/RO_0002578 directly regulates p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q. http://purl.obolibrary.org/obo/RO_0002087 immediately preceded by http://purl.obolibrary.org/obo/BFO_0000062 preceded by starts_at_end_of http://purl.obolibrary.org/obo/RO_0002090 immediately precedes http://purl.obolibrary.org/obo/BFO_0000063 precedes meets http://purl.obolibrary.org/obo/RO_0002447 phosphorylates http://purl.obolibrary.org/obo/RO_0002436 molecularly interacts with An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. http://purl.obolibrary.org/obo/RO_0002405 immediately causally downstream of http://purl.obolibrary.org/obo/RO_0002404 causally downstream of http://purl.obolibrary.org/obo/RO_0002017 has component activity http://purl.obolibrary.org/obo/RO_0002018 has component process http://purl.obolibrary.org/obo/PPO_0000010 has visible part http://purl.obolibrary.org/obo/BFO_0000051 has part http://purl.obolibrary.org/obo/RO_0002559 causally influenced by http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities http://purl.obolibrary.org/obo/RO_0002563 interaction relation helper property http://purl.obolibrary.org/obo/RO_0002464 helper property (not for use in curation) http://purl.obolibrary.org/obo/RO_0002564 molecular interaction relation helper property http://purl.obolibrary.org/obo/RO_0002563 interaction relation helper property http://purl.obolibrary.org/obo/RO_0002481 is kinase activity http://purl.obolibrary.org/obo/RO_0002564 molecular interaction relation helper property http://purl.obolibrary.org/obo/RO_0002086 ends after http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/PPO_0000011 visible part of http://purl.obolibrary.org/obo/BFO_0000050 part of http://purl.obolibrary.org/obo/PPO_0000009 depends on structure http://purl.obolibrary.org/obo/RO_0002502 depends on http://purl.obolibrary.org/obo/RO_0002023 directly negatively regulated by http://purl.obolibrary.org/obo/RO_0002022 directly regulated by http://purl.obolibrary.org/obo/RO_0002024 directly positively regulated by http://purl.obolibrary.org/obo/RO_0002022 directly regulated by http://purl.obolibrary.org/obo/RO_0004033 acts upstream of or within, negative effect http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0004032 acts upstream of or within, positive effect http://purl.obolibrary.org/obo/RO_0002264 acts upstream of or within http://purl.obolibrary.org/obo/RO_0002022 directly regulated by http://purl.obolibrary.org/obo/RO_0002334 regulated by http://purl.obolibrary.org/obo/RO_0002506 causal relation between entities http://purl.obolibrary.org/obo/RO_0002410 causally related to http://purl.obolibrary.org/obo/RO_0004046 causally upstream of or within, negative effect http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0004047 causally upstream of or within, positive effect http://purl.obolibrary.org/obo/RO_0002418 causally upstream of or within http://purl.obolibrary.org/obo/RO_0002025 has effector activity http://purl.obolibrary.org/obo/RO_0002017 has component activity http://purl.obolibrary.org/obo/RO_0000053 has characteristic is bearer of Inverse of characteristic_of http://purl.obolibrary.org/obo/RO_0000056 participates in participates_in a relation between a continuant and a process, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0000057 has participant has_participant a relation between a process and a continuant, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0002320 evolutionarily related to A relationship that holds via some environmental process http://purl.obolibrary.org/obo/RO_0002324 developmentally related to A relationship that holds between entities participating in some developmental process (GO:0032502) http://purl.obolibrary.org/obo/PPO_0000015 is or was part of A relationship that indicates the object was part of the subject at some point in time, but might no longer be so. http://purl.obolibrary.org/obo/IAO_0000136 is about A (currently) primitive relation that relates an information artifact to an entity. http://purl.obolibrary.org/obo/OBI_0000417 achieves_planned_objective This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/OBI_0000833 objective_achieved_by This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process. http://purl.obolibrary.org/obo/RO_0000058 is concretized as A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes. http://purl.obolibrary.org/obo/RO_0000059 concretizes A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant. http://purl.obolibrary.org/obo/RO_0017001 device utilizes material X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y. http://purl.obolibrary.org/obo/RO_0002434 interacts with A relationship that holds between two entities in which the processes executed by the two entities are causally connected. http://purl.obolibrary.org/obo/PPO_0000001 lower count A relationship between a data item and the inclusive lower endpoint of a non-negative integer range that contains the datum's value. http://purl.obolibrary.org/obo/PPO_0000002 upper count A relationship between a data item and the inclusive upper endpoint of a non-negative integer range that contains the datum's value. http://purl.obolibrary.org/obo/PPO_0000003 lower percent A relationship between a data item and the inclusive lower endpoint of a real number range within [0.0,100.0] that contains the datum's value. http://purl.obolibrary.org/obo/PPO_0000004 upper percent A relationship between a data item and the inclusive upper endpoint of a real number range within [0.0,100.0] that contains the datum's value. http://purl.obolibrary.org/obo/PPO_0000005 abscised A relationship between two plant structures p and q such that p 'abscised' q indicates that plant structure q was formerly a part of p and that q was removed from p due to some abscission process. http://purl.obolibrary.org/obo/PPO_0000006 abscised from A relationship between two plant structures p and q such that q 'abscised from' p indicates that plant structure q was formerly a part of p and that q was removed from p due to some abscission process. http://purl.obolibrary.org/obo/PPO_0000008 has quality datum Relates a PATO:quality to an IAO:data item. http://purl.obolibrary.org/obo/PPO_0000014 generated from A relationship between one data item that is the output of a phenology observing process and another data item. http://purl.obolibrary.org/obo/RO_0002323 mereotopologically related to A mereological relationship or a topological relationship http://purl.obolibrary.org/obo/RO_0002328 functionally related to A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. http://purl.obolibrary.org/obo/RO_0010001 generically depends on A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*. http://purl.obolibrary.org/obo/RO_0010002 is carrier of *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t* http://purl.obolibrary.org/obo/RO_0002464 helper property (not for use in curation) http://purl.obolibrary.org/obo/RO_0002487 relation between physical entity and a process or stage http://purl.obolibrary.org/obo/RO_0002222 temporally related to http://purl.obolibrary.org/obo/RO_0002502 depends on http://purl.obolibrary.org/obo/RO_0002410 causally related to