Term IRI Term label Parent term IRI Parent term label Alternative term Definition http://purl.obolibrary.org/obo/IDO_0000436 infectious disease http://purl.obolibrary.org/obo/OGMS_0000031 disease tranmissible disease Disease whose physical basis is an infectious disorder. http://purl.obolibrary.org/obo/IDO_0000481 infectious disease incidence proportion http://purl.obolibrary.org/obo/BFO_0000019 quality cumulative incidence of infectious disease Quality that inheres in an organism population and is the proportion of members of the population not experiencing an infectious disease course at the beginning of a specified period of time and in whom the infectious disease begins during the specified period of time. http://purl.obolibrary.org/obo/IDO_0000482 infection incidence proportion http://purl.obolibrary.org/obo/BFO_0000019 quality cumulative incidence of infection Quality that inheres in an organism population and is the proportion of members of the population not infected at the beginning of a specified period of time who become infected during the specified period of time. http://purl.obolibrary.org/obo/IDO_0000498 active immunization against infectious agent http://purl.obolibrary.org/obo/IDO_0000497 immunization against infectious agent inoculation Immunization that begins with exposure of an organism to antigen and results in immunity against an infectious agent. http://purl.obolibrary.org/obo/IDO_0000514 susceptible population http://purl.obolibrary.org/obo/IDO_0000509 organism population at-risk population Organism population whose members are not infected with an infectious agent and who lack immunity to the infectious agent. http://purl.obolibrary.org/obo/IDO_0000515 normal resident microbiota population http://purl.obolibrary.org/obo/IDO_0000509 organism population normal resident microflora population Organism population whose members are participating in non-parasitic symbiosis with a particular host. http://purl.obolibrary.org/obo/IDO_0000651 primary immunodeficiency http://purl.obolibrary.org/obo/IDO_0000617 immunodeficiency congenital immunodeficiency Immunodeficiency that exists in an organism because of a genetic predisposition. http://purl.obolibrary.org/obo/IDO_0001007 negative regulation of production http://purl.obolibrary.org/obo/GO_0065007 biological regulation Process that stops, prevents, or reduces the frequency, rate or extent of a production process. http://purl.obolibrary.org/obo/IDO_0001008 negative regulation of replication http://purl.obolibrary.org/obo/IDO_0001007 negative regulation of production Process that stops, prevents, or reduces the frequency, rate or extent of a replication process. http://purl.obolibrary.org/obo/IDO_0001009 pathogen birth process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary that marks the start of the life cycle of a pathogen. http://purl.obolibrary.org/obo/IDO_0001011 drug-based immunosuppressed organism http://purl.obolibrary.org/obo/IDO_0001005 negative regulation of establishment of localization Pathologically immunosuppressed organism that is experiencing drug-based immunosuppression. http://purl.obolibrary.org/obo/IDO_0001344 infection start process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary that marks the start of an infection, latency process, and incubation process. http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc. http://purl.obolibrary.org/obo/FBdv_00005259 generative stage http://purl.obolibrary.org/obo/BFO_0000015 process Temporal subdivision of a developmental process. http://purl.obolibrary.org/obo/APOLLO_SV_00000075 infectious disease control objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification Objective specification that is realized by processes that are able or likely to stop the spread of a disease in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy http://purl.obolibrary.org/obo/IAO_0000104 plan specification Plan specification whose objective specification is an infectious disease control objective specification. http://purl.obolibrary.org/obo/APOLLO_SV_00000174 disease transmission model http://purl.obolibrary.org/obo/IAO_0000064 algorithm Algorithm that models the progress of a transmissible disease in a population. http://purl.obolibrary.org/obo/APOLLO_SV_00000229 place closure control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy Infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open. http://purl.obolibrary.org/obo/APOLLO_SV_00000230 case isolation control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy Infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious. http://purl.obolibrary.org/obo/APOLLO_SV_00000308 vector control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy Infectious disease control strategy that has a vector control action specification as part. http://purl.obolibrary.org/obo/APOLLO_SV_00000327 quarantine control strategy http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy Infectious disease control strategy whereby organisms who have had contact with infectious organisms but are not symptomatic or otherwise known to be infectious are prevented from having contact with other susceptible organisms. http://purl.obolibrary.org/obo/APOLLO_SV_00000541 disease surveillance objective specification http://purl.obolibrary.org/obo/IAO_0000005 objective specification Objective specification whose endpoint is human awareness of the level of a particular disease in a particular population of a given biological taxon during some time interval. http://purl.obolibrary.org/obo/NCBITaxon_36469 prion http://purl.obolibrary.org/obo/IDO_0001088 acellular structure Acellular structure that consists of an abnormally folded protein which replicates by by transmitting its abnormal structure to other proteins. http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity descriptive information content entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity Information Content Entity that consists of a set of propositions that describe some Entity. http://purl.obolibrary.org/obo/IDO_0001040 bacteriostatic http://purl.obolibrary.org/obo/IDO_0001090 static agent Static agent bearing a bacteriostatic disposition. http://purl.obolibrary.org/obo/IDO_0001029 parasiticidal disposition http://purl.obolibrary.org/obo/IDO_0001092 cidal agent disposition Disposition to kill parasites. http://purl.obolibrary.org/obo/IDO_0001090 static agent http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity bearing a static agent disposition. http://purl.obolibrary.org/obo/IDO_0001356 communicability start process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the start of a communicability interval. http://purl.obolibrary.org/obo/NCBITaxon_10239 virus http://purl.obolibrary.org/obo/IDO_0001088 acellular structure Acellular structure with RNA or DNA genetic material which uses host metabolic resources for RNA or DNA replication. http://purl.obolibrary.org/obo/BFO_0000002 continuant http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000001 entity An entity that has temporal parts and that happens, unfolds or develops through time. http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000003 occurrent An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) http://purl.obolibrary.org/obo/BFO_0000023 role http://purl.obolibrary.org/obo/BFO_0000017 realizable entity A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/BFO_0000002 continuant Continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. http://purl.obolibrary.org/obo/BFO_0000035 process boundary http://purl.obolibrary.org/obo/BFO_0000003 occurrent p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/BFO_0000015 process b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002]) http://purl.obolibrary.org/obo/IAO_0000005 objective specification http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity directive information content entity Directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved. http://purl.obolibrary.org/obo/IAO_0000007 action specification http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity directive information content entity Directive information entity that describes an action the bearer will take http://purl.obolibrary.org/obo/IAO_0000064 algorithm http://purl.obolibrary.org/obo/IAO_0000104 plan specification Plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata. http://purl.obolibrary.org/obo/IAO_0000104 plan specification http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity directive information content entity Directive information entity that when concretized it is realized in a process in which the bearer tries to achieve the objectives, in part by taking the actions specified. Plan specifications includes parts such as objective specification, action specifications and conditional specifications. http://purl.obolibrary.org/obo/OBI_0000011 planned process http://purl.obolibrary.org/obo/BFO_0000015 process Process that realizes a plan which is the concretization of a plan specification. http://purl.obolibrary.org/obo/OBI_0000070 assay http://purl.obolibrary.org/obo/OBI_0000094 material processing Planned process with the objective to produce information about some evaluant. http://purl.obolibrary.org/obo/OBI_0000086 reagent role http://purl.obolibrary.org/obo/BFO_0000023 role Role inhering in a molecular entity when the molecular entity is used to produce a chemical reaction to detect, measure, or produce other substances. http://purl.obolibrary.org/obo/OBI_0000094 material processing http://purl.obolibrary.org/obo/OBI_0000011 planned process Planned process which results in physical changes in a specified input material. http://purl.obolibrary.org/obo/OBI_0000237 antigen role http://purl.obolibrary.org/obo/CHEBI_24432 biological role Biological role inhering in some molecular entity, that stimulates an immune response when identified by the immune systems cells. http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/BFO_0000040 material entity A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. http://purl.obolibrary.org/obo/OBI_0600058 enzymatic amplification http://purl.obolibrary.org/obo/OBI_0000094 material processing Material processing using enzymes to increase the number of molecules of a material entity. http://purl.obolibrary.org/obo/OBI_1110034 antigen http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Molecular entity bearing an antigen role. http://purl.obolibrary.org/obo/OGMS_0000031 disease http://purl.obolibrary.org/obo/BFO_0000016 disposition Disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. http://purl.obolibrary.org/obo/OGMS_0000063 disease course http://purl.obolibrary.org/obo/BFO_0000015 process Totality of all processes through which a given disease instance is realized. http://purl.obolibrary.org/obo/APOLLO_SV_00000550 contact tracing http://purl.obolibrary.org/obo/APOLLO_SV_00000086 infectious disease control strategy Infectious disease control strategy that identifies and treats contacted organisms in a host population. http://purl.obolibrary.org/obo/IDO_0001109 infectious agent generative stage http://purl.obolibrary.org/obo/IDO_0001111 pathogen generative stage Pathogen generative stage that is a temporal subdivision of an infectious agent developmental process. http://purl.obolibrary.org/obo/IDO_0001355 incubation start process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the start of an incubation interval. http://purl.obolibrary.org/obo/CHEBI_16991 deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid Nucleic acid composed of nucleotides containing deoxyribose and linked by phosphodiester bonds. http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule Macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases. http://purl.obolibrary.org/obo/CHEBI_36080 protein http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule Biological macromolecule consisting of one polypeptide chain synthesized at the ribosome. http://purl.obolibrary.org/obo/CL_0000000 cell http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity This should be an inferred subclass of BFO:object. -John http://purl.obolibrary.org/obo/UBERON_0000178 blood http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity A fluid that is composed of blood plasma and erythrocytes. http://purl.obolibrary.org/obo/IDO_0001028 bacteriostatic disposition http://purl.obolibrary.org/obo/IDO_0001091 static agent disposition Disposition to inhibit the reproduction of bacteria. http://purl.obolibrary.org/obo/IDO_0001083 pathogen birth temporal region http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region Zero-dimensional temporal region occupied by a pathogen birth process boundary. http://purl.obolibrary.org/obo/IDO_0001091 static agent disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition Disposition to inhibit the reproduction of bacteria, fungi, or parasites, or inhibit the replication of viruses. http://purl.obolibrary.org/obo/IDO_0001092 cidal agent disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition Disposition to kill bacteria, fungi, parasites, or viruses. http://purl.obolibrary.org/obo/IDO_0001348 infection start temporal region http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region Zero-dimensional temporal region occupied by an infection start process boundary. http://purl.obolibrary.org/obo/VIDO_0000505 viremia http://purl.obolibrary.org/obo/IDO_0000472 extracellular infection Infection that has as part virus particles located in the blood. http://purl.obolibrary.org/obo/VIDO_0000508 virion http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus that is in its assembled state consisting of genomic material (DNA or RNA) surrounded by coating molecules. http://purl.obolibrary.org/obo/VIDO_0001016 virus replication http://purl.obolibrary.org/obo/IDO_0000608 replication Replication process in which a virus containing some portion of genetic material inherited from a parent virus is replicated. http://purl.obolibrary.org/obo/VIDO_0001066 virus aggregate http://purl.obolibrary.org/obo/IDO_0001065 acellular structure aggregate Acellular structure aggregate whose members are viruses http://purl.obolibrary.org/obo/VIDO_0001067 viroid aggregate http://purl.obolibrary.org/obo/IDO_0001065 acellular structure aggregate Acellular infectious aggregate whose members are viroids. http://purl.obolibrary.org/obo/VIDO_0001069 prion aggregate http://purl.obolibrary.org/obo/IDO_0001065 acellular structure aggregate Acellular infectious aggregate whose members are prions. http://purl.obolibrary.org/obo/VIDO_0001086 prion replication http://purl.obolibrary.org/obo/IDO_0000608 replication Replication process in which a prion facilitates abnormal folding in proteins resulting in additional, identical, abnormally folded proteins. http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage http://purl.obolibrary.org/obo/IDO_0001110 infectious structure generative stage Infectious structure generative stage that is a temporal subdivision of a virus developmental process. http://purl.obolibrary.org/obo/VIDO_0001120 viral disease course http://purl.obolibrary.org/obo/IDO_0000495 infectious disease course Infectious disease whose physical basis is a virus disorder that is clinically abnormal in virtue of the presence of the relevant virus population. http://purl.obolibrary.org/obo/VIDO_0001122 virus disorder http://purl.obolibrary.org/obo/IDO_0000504 infectious disorder Infectious disorder that exists as a result of a process of formation of disorder initiated by a virus. http://purl.obolibrary.org/obo/VIDO_0001189 respiratory droplet fomite http://purl.obolibrary.org/obo/VIDO_0001188 respiratory droplet Respiratory droplet bearing a fomite role. http://purl.obolibrary.org/obo/VIDO_0001195 process of establishing viral infection http://purl.obolibrary.org/obo/IDO_0000603 process of establishing an infection Process of establishing an infection in which a virus participates. http://purl.obolibrary.org/obo/VIDO_0001266 virus adhesion susceptible cell http://purl.obolibrary.org/obo/CL_0000000 cell Cell with an adhesion factor part bearing a viral adhesion disposition http://purl.obolibrary.org/obo/VIDO_0001361 oncovirus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus that causes cancer in hosts. http://purl.obolibrary.org/obo/VIDO_0001363 disordered virus http://purl.obolibrary.org/obo/IDO_0001088 acellular structure Acellular self-replicating organic structure having some clinically abnormal arrangement of viral components (e.g. viral capsid, viral DNA/RNA). http://purl.obolibrary.org/obo/VIDO_0001364 disordered prion http://purl.obolibrary.org/obo/IDO_0001088 acellular structure Acellular structure having some arrangement of protein components, that is clinically abnormal. http://purl.obolibrary.org/obo/VIDO_0001372 epitope site http://purl.obolibrary.org/obo/BFO_0000029 site Site part of an antigen that is recognized by immune system cells and to which antibodies attach. http://purl.obolibrary.org/obo/VIDO_0001386 viral disease pandemic http://purl.obolibrary.org/obo/IDO_0000503 infectious disease pandemic Process in which multiple viral disease epidemics of the same type of viral disease unfold over overlapping periods of time and affect organism populations located in different geographic regions, including different countries and continents. http://purl.obolibrary.org/obo/VIDO_0001387 viral disease epidemic http://purl.obolibrary.org/obo/IDO_0000502 infectious disease epidemic Process of viral disease realizations and for which there is a statistically significant increase in the infectious disease incidence of a population. http://purl.obolibrary.org/obo/VSMO_ surveillance process http://purl.obolibrary.org/obo/OBI_0000011 planned process Planned process with the objective to produce information about some evaluant with the purpose of, if justified by the information gathered, managing, directing, or protecting. http://purl.obolibrary.org/obo/ido.owl/CARO_0000005 anatomical space http://purl.obolibrary.org/obo/BFO_0000029 site Site generated by morphogenetic or physiologic processes that is bounded by an anatomical surface. http://purl.obolibrary.org/obo/ido.owl/CARO_0000062 cell space http://purl.obolibrary.org/obo/ido.owl/CARO_0000005 anatomical space Anatomical space that is part of a cell. http://purl.obolibrary.org/obo/ido.owl/IDO_0001026 fungistatic disposition http://purl.obolibrary.org/obo/IDO_0001091 static agent disposition Disposition to inhibit the reproduction of fungi. http://purl.obolibrary.org/obo/ido.owl/IDO_0001036 pathogen portal of entry site http://purl.obolibrary.org/obo/ido.owl/CARO_0000005 anatomical space Anatomical space through which a pathogen enters an organism. http://purl.obolibrary.org/obo/ido.owl/IDO_0001037 pathogen portal of exit site http://purl.obolibrary.org/obo/ido.owl/CARO_0000005 anatomical space Anatomical space through which a pathogen exits an organism. http://purl.obolibrary.org/obo/ido.owl/IDO_0001107 source of infection site http://purl.obolibrary.org/obo/ido.owl/CARO_0000005 anatomical space Anatomical space in which an infection appears in a host organism. http://purl.obolibrary.org/obo/ido.owl/IDO_0001130 pathogen vector role http://purl.obolibrary.org/obo/IDO_0001096 pathogen transporter role A pathogen transporter role that is borne by an organism active in the transfer of an infectious agent or infectious structure to an organism of another species in which it can realize its infectious disposition. http://www.informatics.jax.org/vocab/gene_ontology/GO:0009405 pathogenesis http://purl.obolibrary.org/obo/BFO_0000015 process Process that generates the ability of a pathogen to induce disorder in an organism. http://www.ontologyrepository.com/CommonCoreOntologies/Country country http://www.ontologyrepository.com/CommonCoreOntologies/GeopoliticalEntity geopolitical entity A Geopolitical Entity that delimits a Government with effective internal and external sovereignty over the region and its population, and which is not dependent on or subject to any other power or Geopolitical Entity. http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity directive information content entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity Information Content Entity that consists of a set of propositions or images (as in the case of a blueprint) that prescribe some Entity. http://www.ontologyrepository.com/CommonCoreOntologies/DivisionOfGeopoliticalEntity division of geopolitical entity http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion geospatial region A Geospatial Region that is a fiat division of a Geopolitical Entity and not a Geopolitical Entity. http://www.ontologyrepository.com/CommonCoreOntologies/GeopoliticalEntity geopolitical entity http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion geospatial region A geospatial region that delimits the authority of a formally constituted government to exercise its control within the bounded area. http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialLocation geospatial location http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion geospatial region A Geospatial Region at which an Entity or Event is located. http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion geospatial region http://purl.obolibrary.org/obo/BFO_0000029 site A site at or near the surface of the Earth. http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule http://purl.obolibrary.org/obo/CHEBI_23367 molecular entity Molecular entity of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. http://purl.obolibrary.org/obo/CHEBI_33697 ribonucleic acid http://purl.obolibrary.org/obo/CHEBI_33696 nucleic acid Nucleic acid composed of nucleotides containing ribose and linked by phosphodiester bonds. http://purl.obolibrary.org/obo/CHEBI_4705 double-stranded DNA http://purl.obolibrary.org/obo/CHEBI_16991 deoxyribonucleic acid DNA consisting of two parallel strands joined by hydrogen bonds between complementary purines and pyrimidines. http://purl.obolibrary.org/obo/GO_0051234 establishment of localization http://purl.obolibrary.org/obo/GO_0008150 biological process Process that localizes a substance or cellular component via movement, tethering or selective degradation. http://purl.obolibrary.org/obo/GO_0046727 capsomere http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule Protein subunit comprising viral capsid. http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/BFO_0000015 process Process that modulates a measurable attribute of any biological process, quality or function. http://purl.obolibrary.org/obo/NCBITaxon_35237 double-stranded DNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus that has its genetic material encoded in double-stranded DNA and replicates using DNA polymerase. http://purl.obolibrary.org/obo/NCBITaxon_35268 double-stranded DNA retrovirus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material that is encoded in double-stranded DNA and replicates through single-stranded RNA intermediate. http://purl.obolibrary.org/obo/NCBITaxon_35278 positive-sense single-stranded RNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material encoded in single-stranded RNA that can be translated directly into proteins. http://purl.obolibrary.org/obo/NCBITaxon_35301 negative-sense single-stranded RNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material encoded in single-stranded RNA that can be translated into proteins only after transcription by RNA polymerase. http://purl.obolibrary.org/obo/NCBITaxon_35325 double-stranded RNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material encoded in double-stranded RNA. http://purl.obolibrary.org/obo/UBERON_0000463 organism substance http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity Anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. http://purl.obolibrary.org/obo/UBERON_0006538 respiratory secretion http://purl.obolibrary.org/obo/UBERON_0000463 organism substance Organism substance that is secreted by a respiratory system. http://purl.obolibrary.org/obo/UBERON_0007311 sputum http://purl.obolibrary.org/obo/UBERON_0006538 respiratory secretion Matter ejected from the lungs, bronchi, and trachea, through the mouth. http://purl.obolibrary.org/obo/GEO_000000370 geographical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity that is (1) a bona fide or fiat object part of the crust, any bodies of liquid on or contained within the crust, or planetary boundary layer (if present) of a terrestrial planet (including Earth), dwarf planet, exoplanet, natural satellite, planetesimal, or small Solar System body, and that (2) overlaps the planetary surface (including having a boundary that coincides with part of the planetary surface). http://purl.obolibrary.org/obo/GEO_000000372 geographical region http://purl.obolibrary.org/obo/GEO_000000370 geographical entity Geographical entity that is demarcated at least in part by one or more closed fiat boundaries all of whose lines are part of the planetary surface. http://purl.obolibrary.org/obo/IDO_0000445 resistance to drug http://purl.obolibrary.org/obo/IDO_0000444 protective resistance Protective resistance that mitigates the damaging effects of a drug. http://purl.obolibrary.org/obo/IDO_0000502 infectious disease epidemic http://purl.obolibrary.org/obo/BFO_0000015 process Process of infectious disease realizations and for which there is a statistically significant increase in the infectious disease incidence of a population. http://purl.obolibrary.org/obo/IDO_0000509 organism population http://purl.obolibrary.org/obo/BFO_0000027 object aggregate Aggregate of organisms of the same species. http://purl.obolibrary.org/obo/IDO_0000581 antibiotic resistance http://purl.obolibrary.org/obo/IDO_0000445 resistance to drug Resistance to drug that mitigates the damaging effects of an antibiotic. http://purl.obolibrary.org/obo/IDO_0000629 host role http://purl.obolibrary.org/obo/BFO_0000023 role Role borne by either an organism whose extended organism contains a distinct material entity, or an acellular structure containing a distinct material entity, realized in use of that structure or organism as a site of reproduction or replication. http://purl.obolibrary.org/obo/OGMS_0000087 extended organism http://purl.obolibrary.org/obo/BFO_0000027 object aggregate Object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism. http://purl.obolibrary.org/obo/TRANS_0000000 pathogen transmission process http://purl.obolibrary.org/obo/BFO_0000015 process Process in which a pathogen is transmitted directly or indirectly to a new host. http://purl.obolibrary.org/obo/TRANS_0000002 indirect pathogen transmission process http://purl.obolibrary.org/obo/TRANS_0000000 pathogen transmission process Pathogen transmission process in which a pathogen is indirectly transferred to a host by intermediary vehicles or vectors. http://purl.obolibrary.org/obo/TRANS_0000007 contact pathogen transmission process http://purl.obolibrary.org/obo/TRANS_0000000 pathogen transmission process Pathogen transmission process in which a pathogen is transferred to a host through surface-to-surface contact. http://purl.obolibrary.org/obo/TRANS_0000008 droplet pathogen transmission process http://purl.obolibrary.org/obo/TRANS_0000002 indirect pathogen transmission process Indirect pathogen transmission process in which a pathogen is transmitted from a host expelling respiratory droplets to another host. http://purl.obolibrary.org/obo/GEO_000000371 geographical feature http://purl.obolibrary.org/obo/GEO_000000370 geographical entity Geographical entity that has at least one bona fide boundary. http://www.ebi.ac.uk/efo/EFO_1000637 acute respiratory distress syndrome http://www.ebi.ac.uk/efo/EFO_0000684 respiratory system disease Progressive and life-threatening pulmonary distress in the absence of an underlying pulmonary condition, usually following major trauma or surgery. http://purl.obolibrary.org/obo/OMRSE_00000061 architectural structure http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity that is a human made structure with firm connection between its foundation and the ground. http://purl.obolibrary.org/obo/OMRSE_00000062 facility http://purl.obolibrary.org/obo/OMRSE_00000061 architectural structure Architectural structure that bears some function. http://purl.obolibrary.org/obo/OMRSE_00000063 hospital facility http://purl.obolibrary.org/obo/OMRSE_00000102 healthcare facility Facility that is run by a hospital organization and is the bearer of a hospital function. http://purl.obolibrary.org/obo/OMRSE_00000102 healthcare facility http://purl.obolibrary.org/obo/OMRSE_00000062 facility Facility that is administered by a health care organization for the purpose of providing health care to a patient or patient population. http://purl.obolibrary.org/obo/GO_19076 virus release stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus generative stage involving dissemination of mature virus particles from the host cell, by cell lysis or the budding of virus particles from the cell membrane. http://purl.obolibrary.org/obo/IDO_0001088 acellular structure http://purl.obolibrary.org/obo/BFO_0000030 object Object that is an arrangement of interrelated acellular parts forming a biological unit. http://purl.obolibrary.org/obo/IDO_0001030 parasitostatic disposition http://purl.obolibrary.org/obo/IDO_0001091 static agent disposition Disposition to inhibit the reproduction of parasites. http://purl.obolibrary.org/obo/IDO_0001346 incubation end process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the end of an incubation period. http://purl.obolibrary.org/obo/IDO_0001110 infectious structure generative stage http://purl.obolibrary.org/obo/IDO_0001111 pathogen generative stage Pathogen generative stage that is a temporal subdivision of an infectious structure developmental process. http://purl.obolibrary.org/obo/IDO_0001163 cytotoxin disposition http://purl.obolibrary.org/obo/IDO_0000426 toxin disposition Toxin disposition realized in processes resulting in damage to host cells. http://purl.obolibrary.org/obo/NCBITaxon_2169561 single-stranded RNA retrovirus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material encoded in single-stranded RNA that replicates using reverse transcriptase to convert positive-sense RNA to DNA. http://purl.obolibrary.org/obo/IDO_0001354 latency start process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the start of a latency interval. http://purl.obolibrary.org/obo/IDO_0001111 pathogen generative stage http://purl.obolibrary.org/obo/FBdv_00005259 generative stage Generative stage that is a temporal subdivision of a pathogen developmental process. http://purl.obolibrary.org/obo/IDO_0001172 infectious structure aggregate http://purl.obolibrary.org/obo/IDO_0001065 acellular structure aggregate Acellular structure aggregate whose members are infectious structures. http://purl.obolibrary.org/obo/GO_0002250 adaptive immune response http://purl.obolibrary.org/obo/GO_0006955 immune response Immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory). http://purl.obolibrary.org/obo/GO_0002443 leukocyte mediated immunity http://purl.obolibrary.org/obo/GO_0006955 immune response Process involved in the carrying out of an immune response by a leukocyte. http://purl.obolibrary.org/obo/GO_0006955 immune response http://purl.obolibrary.org/obo/GO_0008150 biological process Immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. http://purl.obolibrary.org/obo/GO_0006959 humoral immune response http://purl.obolibrary.org/obo/GO_0006955 immune response Immune response mediated through a body fluid. http://purl.obolibrary.org/obo/GO_0008150 biological process http://purl.obolibrary.org/obo/BFO_0000015 process Process specifically pertinent to the functioning of functionally integrated units. http://purl.obolibrary.org/obo/GO_0032502 developmental process http://purl.obolibrary.org/obo/GO_0008150 biological process Biological process whose specific outcome is the progression of a functional, integrated, unit. http://purl.obolibrary.org/obo/GO_0032991 macromolecular complex http://purl.obolibrary.org/obo/BFO_0000040 material entity Stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. http://purl.obolibrary.org/obo/GO_0045087 innate immune response http://purl.obolibrary.org/obo/GO_0006955 immune response Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. http://purl.obolibrary.org/obo/GO_0046718 virus penetration stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus generative stage during which a virion or viral nucleic acid breaches the barriers of a host. http://purl.obolibrary.org/obo/GO_0048519 negative regulation of biological process http://purl.obolibrary.org/obo/GO_0065007 biological regulation Process that stops, prevents, or reduces the frequency, rate or extent of a biological process. http://purl.obolibrary.org/obo/GO_0050777 negative regulation of immune response http://purl.obolibrary.org/obo/GO_0065007 biological regulation Process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. http://purl.obolibrary.org/obo/GO_0051093 negative regulation of developmental process http://purl.obolibrary.org/obo/GO_0065007 biological regulation Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). http://purl.obolibrary.org/obo/GO_0019028 viral capsid http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule Protein surrounding virion nucleic acid in some virus particles. http://purl.obolibrary.org/obo/GO_0019031 viral envelope http://purl.obolibrary.org/obo/CHEBI_33839 macromolecule Macromolecule lipid bilayer of a virion surrounding capsid. http://purl.obolibrary.org/obo/GO_0019061 virus uncoating stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus generative stage during which an incoming virus is disassembled in the host cell to release a replication-competent viral genome. http://purl.obolibrary.org/obo/GO_0019062 virus attachment stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus generative stage during which a virion protein binds to molecules on the host surface or host cell surface projection. http://purl.obolibrary.org/obo/GO_0019068 virus synthesis stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus developmental stage during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed. http://purl.obolibrary.org/obo/GO_0019081 virus translation stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus generative stage during which viral mRNA is translated into viral protein, using the host cellular machinery. http://purl.obolibrary.org/obo/GO_0019083 virus transcription stage http://purl.obolibrary.org/obo/VIDO_0001114 virus generative stage Virus developmental stage during which a viral genome, or part of a viral genome, is transcribed within the host cell. http://purl.obolibrary.org/obo/GO_0019814 immunoglobulin complex http://purl.obolibrary.org/obo/GO_0032991 macromolecular complex Protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph. http://purl.obolibrary.org/obo/GO_0019815 B cell receptor complex http://purl.obolibrary.org/obo/GO_0032991 macromolecular complex Immunoglobulin complex present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins. http://purl.obolibrary.org/obo/GO_0044406 adhesion of symbiont to host http://purl.obolibrary.org/obo/GO_0008150 biological process Attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. http://purl.obolibrary.org/obo/GO_0044409 entry into host http://purl.obolibrary.org/obo/GO_0008150 biological process Penetration by an organism into the body, tissues, or cells of the host organism. http://purl.obolibrary.org/obo/GO_0042101 T cell receptor complex http://purl.obolibrary.org/obo/GO_0032991 macromolecular complex Protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains. http://purl.obolibrary.org/obo/GO_0044411 entry into host through host barriers http://purl.obolibrary.org/obo/GO_0044409 entry into host Penetration by an organism into its host organism via active breaching of the physical barriers of the host organism. http://purl.obolibrary.org/obo/GO_0048525 negative regulation of viral process http://purl.obolibrary.org/obo/GO_0065007 biological regulation Process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant. http://purl.obolibrary.org/obo/IDO_0001164 neurotoxin disposition http://purl.obolibrary.org/obo/IDO_0000426 toxin disposition Toxin disposition realized in damaging or interfering with the function of nerve tissue. http://purl.obolibrary.org/obo/IDO_0001133 symptomatic carrier role http://purl.obolibrary.org/obo/IDO_0000415 pathogen host role Pathogen host role borne by an organism whose extended organism contains a pathogen bearing an infectious disposition towards the host, and the host has manifested symptoms of the infectious disease caused by the pathogen. http://purl.obolibrary.org/obo/IDO_0001374 epitope role http://purl.obolibrary.org/obo/CHEBI_24432 biological role Biological role borne by a molecular entity that serves as the site on an antigen realized in immune system recognition and binding by antibodies. http://purl.obolibrary.org/obo/GO_0044403 symbiotic process http://purl.obolibrary.org/obo/GO_0008150 biological process Process carried out by gene products in an organism or acellular structure that enables the entity to engage in a symbiotic relationship with an organism. http://purl.obolibrary.org/obo/IDO_0001335 establishment of localization in human host http://purl.obolibrary.org/obo/IDO_0000625 establishment of localization in host Establishment of localization in or on a human host. http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity part of or substance produced by a multicellular organism with granularity above the level of a protein complex. http://purl.obolibrary.org/obo/IDO_0000400 symbiont role http://purl.obolibrary.org/obo/BFO_0000023 role A role borne by an organism in symbiosis. http://purl.obolibrary.org/obo/IDO_0000401 mutualist role http://purl.obolibrary.org/obo/IDO_0000400 symbiont role Symbiont role borne by an organism in which both symbionts derive a growth, survival, or fitness advantage from symbiosis. http://purl.obolibrary.org/obo/IDO_0000402 commensal role http://purl.obolibrary.org/obo/IDO_0000400 symbiont role Symbiont role borne by an organism that derives a growth, survival, or fitness advantage from symbiosis, while the other symbiont is neither advantaged nor disadvantaged. http://purl.obolibrary.org/obo/IDO_0000403 parasite role http://purl.obolibrary.org/obo/IDO_0000400 symbiont role Symbiont role borne by an organism that derives a growth, survival, or fitness advantage from symbiosis while the other symbiont's growth, survival, or fitness is reduced. http://purl.obolibrary.org/obo/IDO_0000406 opportunistic infectious disposition http://purl.obolibrary.org/obo/ido.owl/IDO_0001157 infectious disposition Infectious disposition to become part of a disorder only in organisms whose defenses are compromised. http://purl.obolibrary.org/obo/IDO_0000409 definitive host role http://purl.obolibrary.org/obo/IDO_0000408 symbiont host role Symbiont host role borne by an organism iwhose partner in symbiosis reaches developmental maturity or reproduces sexually in the host. http://purl.obolibrary.org/obo/IDO_0000410 intermediate host role http://purl.obolibrary.org/obo/IDO_0000408 symbiont host role Symbiont host role borne by an organism whose partner in symbiosis utilizes the host to undergo a developmental stage transition, and the host is required for continuation of the partner's life cycle. http://purl.obolibrary.org/obo/IDO_0000412 dead-end host role http://purl.obolibrary.org/obo/IDO_0000408 symbiont host role Symbiont host role borne by an organism whose partner in symbiosis has the infectious disposition but cannot be transmitted from the host to the partner's definitive host. http://purl.obolibrary.org/obo/IDO_0000419 mechanical vector role http://purl.obolibrary.org/obo/ido.owl/IDO_0001130 pathogen vector role A pathogen vector role borne by an organism in virtue of the fact that the pathogen does not multiply in or on the vector. http://purl.obolibrary.org/obo/IDO_0000420 biological vector role http://purl.obolibrary.org/obo/ido.owl/IDO_0001130 pathogen vector role A pathogen vector role borne by an organism in virtue of the fact that the pathogen multiplies in the vector. http://purl.obolibrary.org/obo/IDO_0000421 pathogen vehicle role http://purl.obolibrary.org/obo/IDO_0001096 pathogen transporter role A pathogen transporter role borne by an entity in virtue of the fact that the entity is not a complete organism. http://purl.obolibrary.org/obo/IDO_0000422 biological vehicle role http://purl.obolibrary.org/obo/IDO_0000421 pathogen vehicle role A pathogen vehicle role borne by an entity in virtue of the fact that the entity is living or contains living cells other than those that have the infectious disposition. http://purl.obolibrary.org/obo/IDO_0000423 fomite role http://purl.obolibrary.org/obo/IDO_0000421 pathogen vehicle role An infectious agent vehicle role borne by an entity in virtue of the fact that the entity is not alive. http://purl.obolibrary.org/obo/IDO_0000427 exotoxin disposition http://purl.obolibrary.org/obo/IDO_0000426 toxin disposition Toxin disposition to damage cells or extracellular matrix by a direct enzymatic process. http://purl.obolibrary.org/obo/IDO_0000434 primary infection role http://purl.obolibrary.org/obo/BFO_0000023 role Role borne by an infectious disorder whose host has another, distinct, infectious disorder - neither arising from the other through metastasis - which emerged after this infectious disorder was established due to increased host susceptibility to infectious disorders. http://purl.obolibrary.org/obo/IDO_0000435 secondary infection role http://purl.obolibrary.org/obo/BFO_0000023 role Role borne by an infectious disorder whose host has another, distinct, primary infectious disorder - neither arising from the other through metastasis - which emerged after the primary infectious disorder was established due to increased host susceptibility to infectious disorders. http://purl.obolibrary.org/obo/IDO_0000437 adhesion disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition Disposition borne by a macromolecule that is the disposition to participate in adherence to a host. http://purl.obolibrary.org/obo/IDO_0000446 resistance to pathogen http://purl.obolibrary.org/obo/IDO_0000444 protective resistance Protective resistance that inheres in an organism and mitigates the damaging effects of a pathogen. http://purl.obolibrary.org/obo/IDO_0000447 herd immunity to infectious organism http://purl.obolibrary.org/obo/IDO_0000588 collective resistance disposition Collective resistance disposition that inheres in an organism population where the proportion of the population with immunity to an infectious agent is high resulting in a low number of transmissions from hosts to susceptible individuals. http://purl.obolibrary.org/obo/IDO_0000448 immunity to pathogen http://purl.obolibrary.org/obo/IDO_0000446 resistance to pathogen Resistance to pathogen that inheres in an organism due to immune system components in its extended organism. http://purl.obolibrary.org/obo/IDO_0000449 sterilizing immunity to infectious agent http://purl.obolibrary.org/obo/IDO_0000448 immunity to pathogen Immunity to pathogen that results in elimination of the infectious agent from the host. http://purl.obolibrary.org/obo/IDO_0000453 zoonotic disposition http://purl.obolibrary.org/obo/ido.owl/IDO_0001157 infectious disposition Infectious disposition to be transmitted from an infected, non-human host to a human host. http://purl.obolibrary.org/obo/IDO_0000454 reverse zoonotic disposition http://purl.obolibrary.org/obo/ido.owl/IDO_0001157 infectious disposition Infectious disposition to be transmitted from an infected, human host to a non-human host. http://purl.obolibrary.org/obo/IDO_0000456 immunosuppressed organism http://purl.obolibrary.org/obo/OBI_0100026 organism Organism that is experiencing immunosuppression. http://purl.obolibrary.org/obo/IDO_0000463 infectious pathogen transmissibility http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an infectious agent or infectious structure and is the likelihood that the agent or structure will undergo a horizontal transmission process. http://purl.obolibrary.org/obo/IDO_0000464 infectivity http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in a pathogen and is the liklihood that the infectious disposition will be realized upon exposure of a susceptible organism. http://purl.obolibrary.org/obo/IDO_0000466 virulence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in a pathogen and is the degree to which realizations of the infectious disease caused by the pathogen become severe or fatal. http://purl.obolibrary.org/obo/IDO_0000467 susceptibility http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an entity and is the degree to which it can be harmed by another entity. http://purl.obolibrary.org/obo/IDO_0000468 susceptibility to infectious agent http://purl.obolibrary.org/obo/IDO_0000467 susceptibility Susceptibility that inheres in an organism and is the degree to which it can be harmed by an infectious agent. http://purl.obolibrary.org/obo/IDO_0000469 drug susceptibility http://purl.obolibrary.org/obo/IDO_0000467 susceptibility Susceptibility that is the degree to which an entity can be harmed or inhibited from surviving by a drug. http://purl.obolibrary.org/obo/IDO_0000470 drug susceptibility of infectious agent http://purl.obolibrary.org/obo/IDO_0000469 drug susceptibility Drug susceptibility that inheres in an infectious agent and is the degree to which the infectious agent can be harmed or inhibited from surviving by a drug. http://purl.obolibrary.org/obo/IDO_0000471 complex infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection comprised of infectious organisms from different species. http://purl.obolibrary.org/obo/IDO_0000473 intracellular infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection in which pathogen parts persist inside host cells. http://purl.obolibrary.org/obo/IDO_0000474 systematic infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection for which the infectious agents or structures that are part of the infection are distributed throughout the host. http://purl.obolibrary.org/obo/IDO_0000475 local infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection for which the infectious agents or structures that are part of the infection are limited to a relatively small area of the host's body. http://purl.obolibrary.org/obo/IDO_0000477 acute infectious disease course http://purl.obolibrary.org/obo/IDO_0000495 infectious disease course Infectious disease course that begins soon after infection is established and progresses rapidly to severe stages. http://purl.obolibrary.org/obo/IDO_0000479 infectious disease incidence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of realizations of an infectious disease for which the infectious disease course begins during a specified period of time. http://purl.obolibrary.org/obo/IDO_0000480 infection incidence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of organisms in the population that become infected with a pathogen during a specified period of time. http://purl.obolibrary.org/obo/IDO_0000483 infectious disease incidence rate http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the infectious disease incidence proportion per unit time. http://purl.obolibrary.org/obo/IDO_0000484 infection incidence rate http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the infection incidence proportion per unit time. http://purl.obolibrary.org/obo/IDO_0000485 infectious disease prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of realizations of an infectious disease in the population at a specified time. http://purl.obolibrary.org/obo/IDO_0000486 infection prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of organisms in the population infected with a pathogen at a specified time. http://purl.obolibrary.org/obo/IDO_0000487 infectious disease lifetime prevalence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of organisms in the population who have, at any point during their lives, been bearers of an infectious disease and experienced realization of the disease. http://purl.obolibrary.org/obo/IDO_0000488 pathogen seroprevalence http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the number of organisms in the population that have antibody specific for a pathogen in their serum at a specified time. http://purl.obolibrary.org/obo/IDO_0000489 infectious disease mortality rate http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population and is the per capita number of deaths in the population resulting from an infectious disease over a specified period of time. http://purl.obolibrary.org/obo/IDO_0000490 infectious disease endemicity http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population in virtue of the fact that infections of the type that causes an infectious disease are maintained in the population via intra-population transmission or by transmission from a local reservoir. http://purl.obolibrary.org/obo/IDO_0000494 infectious disease sporadicity http://purl.obolibrary.org/obo/BFO_0000019 quality Quality that inheres in an organism population by virtue of the fact that realizations of an infectious disease occur in the population with a fluctuating prevalence. http://purl.obolibrary.org/obo/IDO_0000495 infectious disease course http://purl.obolibrary.org/obo/OGMS_0000063 disease course Disease course that is the realization of an infectious disease. http://purl.obolibrary.org/obo/IDO_0000496 long-term non-progressing infectious disease course http://purl.obolibrary.org/obo/IDO_0000590 chronic infectious disease course Chronic infectious disease course that does not progress to severe stages for a long period of time. http://purl.obolibrary.org/obo/IDO_0000497 immunization against infectious agent http://purl.obolibrary.org/obo/BFO_0000015 process Process by which an organism acquires immunity to an infectious agent. http://purl.obolibrary.org/obo/IDO_0000499 vaccination against infectious agent http://purl.obolibrary.org/obo/IDO_0000498 active immunization against infectious agent Active immunization that begins with exposure of an organism to a vaccine. http://purl.obolibrary.org/obo/IDO_0000500 variolation http://purl.obolibrary.org/obo/IDO_0000498 active immunization against infectious agent Active immunization that begins with exposure to smallpox in the form of a scab from a pustule and results in immunity against smallpox. http://purl.obolibrary.org/obo/IDO_0000501 passive immunization against infectious agent http://purl.obolibrary.org/obo/IDO_0000497 immunization against infectious agent Immunization that begins with transfer to an organism of molecules not produced by that organism and that confer immunity against an infectious agent. http://purl.obolibrary.org/obo/IDO_0000503 infectious disease pandemic http://purl.obolibrary.org/obo/BFO_0000015 process Process in which multiple infectious disease epidemics of the same type of infectious disease unfold over overlapping periods of time and affect organism populations located in different geographic regions, including different countries and continents. http://purl.obolibrary.org/obo/IDO_0000506 bacteremia http://purl.obolibrary.org/obo/IDO_0000472 extracellular infection Infection that has as part bacteria located in the blood. http://purl.obolibrary.org/obo/IDO_0000511 infected population http://purl.obolibrary.org/obo/IDO_0000509 organism population Organism population whose members have an infection. http://purl.obolibrary.org/obo/IDO_0000512 diseased population http://purl.obolibrary.org/obo/IDO_0000509 organism population Organism population in whose members an infectious disease is being realized. http://purl.obolibrary.org/obo/IDO_0000513 infectious agent population http://purl.obolibrary.org/obo/IDO_0000509 organism population Organism population whose members each have an infectious disposition. http://purl.obolibrary.org/obo/IDO_0000519 incubation interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region One-dimensional temporal region beginning with the extablishment of an infectious agent or structure in a host and ending with the onset of symptoms in the host. http://purl.obolibrary.org/obo/IDO_0000520 communicability interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region One-dimensional temporal region during which a pathogen host bears a contagiousness disposition. http://purl.obolibrary.org/obo/IDO_0000523 obligatory symbiont http://purl.obolibrary.org/obo/IDO_0000522 symbiont Organism that can only reach developmental maturity, replicate, or persist in symbiosis. http://purl.obolibrary.org/obo/IDO_0000551 enterotoxin http://purl.obolibrary.org/obo/IDO_0000550 exotoxin Exotoxin bearing an enterotoxin disposition. http://purl.obolibrary.org/obo/IDO_0000552 endotoxin http://purl.obolibrary.org/obo/IDO_0000549 toxin Toxin bearing an endotoxin disposition that is a structural component of a pathogen and is released from the pathogen only upon cytolysis. http://purl.obolibrary.org/obo/IDO_0000554 pathogen portal of exit http://purl.obolibrary.org/obo/CARO_0000000 anatomical entity Anatomical entity bearing a pathogen portal of exit role. http://purl.obolibrary.org/obo/IDO_0000568 zoonosis http://purl.obolibrary.org/obo/IDO_0000436 infectious disease Infectious disease inhering in an infectious disorder composed of pathogens having zoonotic dispositions. http://purl.obolibrary.org/obo/IDO_0000571 resistant entity http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity bearing protective resistance. http://purl.obolibrary.org/obo/IDO_0000579 leukocyte-mediated immunity to infectious agent http://purl.obolibrary.org/obo/IDO_0000448 immunity to pathogen Immunity to pathogen that inheres in an organism in virtue of its leukocytes. http://purl.obolibrary.org/obo/IDO_0000580 passive immunity to infectious agent http://purl.obolibrary.org/obo/IDO_0000448 immunity to pathogen Immunity to pathogen that inheres in an organism in virtue of antibodies not produced by that organism. http://purl.obolibrary.org/obo/IDO_0000583 emerging pathogen http://purl.obolibrary.org/obo/IDO_0000528 pathogen Pathogen whose infection incidence is increasing following its first introduction into a new host Species. http://purl.obolibrary.org/obo/IDO_0000584 cytotoxin http://purl.obolibrary.org/obo/IDO_0000549 toxin Toxin bearing a cytotoxin disposition. http://purl.obolibrary.org/obo/IDO_0000585 collective pathogenic disposition http://purl.obolibrary.org/obo/IDO_0000455 collective disposition Collective disposition to initiate processes that result in a disorder. http://purl.obolibrary.org/obo/IDO_0000587 genetic resistance to pathogen http://purl.obolibrary.org/obo/IDO_0000446 resistance to pathogen Resistance to pathogen that inheres in an organism due to an allele or combination of alleles in its genome. http://purl.obolibrary.org/obo/IDO_0000588 collective resistance disposition http://purl.obolibrary.org/obo/IDO_0000455 collective disposition Collective disposition the realization of which mitigates the damaging effects of some entity on members of the collection. http://purl.obolibrary.org/obo/IDO_0000590 chronic infectious disease course http://purl.obolibrary.org/obo/IDO_0000495 infectious disease course Infectious disease course that unfolds over a long period of time. http://purl.obolibrary.org/obo/IDO_0000592 immune population http://purl.obolibrary.org/obo/IDO_0000509 organism population Organism population whose members have acquired immunity to an infectious agent. http://purl.obolibrary.org/obo/IDO_0000593 transmission interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region One-dimensional temporal region during which a transmission process occurs. http://purl.obolibrary.org/obo/IDO_0000603 process of establishing an infection http://purl.obolibrary.org/obo/BFO_0000015 process Process by which an infectious agent or infectious structure, established in a host, becomes part of an infection in the host. http://purl.obolibrary.org/obo/IDO_0000604 colonization of host http://purl.obolibrary.org/obo/IDO_0000625 establishment of localization in host Establishment of localization in host process in which an organism or acellular structure establishes a colony in or on a host. http://purl.obolibrary.org/obo/IDO_0000606 establishment of a clinically abnormal colony http://purl.obolibrary.org/obo/IDO_0000604 colonization of host Colonization of host process that results in a clinically abnormal colony. http://purl.obolibrary.org/obo/IDO_0000607 production http://purl.obolibrary.org/obo/BFO_0000015 process Process in which an entity comes into being as a result of the process. http://purl.obolibrary.org/obo/IDO_0000608 replication http://purl.obolibrary.org/obo/IDO_0000607 production Production process in which a participant creates a copy of itself. http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression http://purl.obolibrary.org/obo/BFO_0000015 process Process that attenuates an immune response. http://purl.obolibrary.org/obo/IDO_0000611 physiologic immunosuppression http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression Immunosuppression which unfolds as part of the natural self-regulation of an immune response. http://purl.obolibrary.org/obo/IDO_0000612 pathologic immunosuppression http://purl.obolibrary.org/obo/IDO_0000610 immunosuppression Immunosuppression process which arises as the result of a disorder. http://purl.obolibrary.org/obo/IDO_0000615 colony http://purl.obolibrary.org/obo/IDO_0000509 organism population Organism population persisting in a site it has colonized. http://purl.obolibrary.org/obo/IDO_0000616 infectious agent colony http://purl.obolibrary.org/obo/IDO_0000615 colony Colony whose members are infectious agents. http://purl.obolibrary.org/obo/IDO_0000617 immunodeficiency http://purl.obolibrary.org/obo/OGMS_0000045 disorder Disorder of an immune system component that results in defective functioning of the immune system. http://purl.obolibrary.org/obo/IDO_0000625 establishment of localization in host http://purl.obolibrary.org/obo/GO_0051234 establishment of localization Establishment of localization process in which a material entity reaches a site in or on a host in which it can survive, grow, multiply, or mature. http://purl.obolibrary.org/obo/IDO_0000628 chronic infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection that persists for an extended period of time. http://purl.obolibrary.org/obo/IDO_0000631 community-acquired infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection resulting from a transmission process that did not unfold in a health care facility. http://purl.obolibrary.org/obo/IDO_0000632 neurotoxin http://purl.obolibrary.org/obo/IDO_0000549 toxin Toxin bearing a neurotoxin disposition. http://purl.obolibrary.org/obo/IDO_0000633 metastatic infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection established as a result of spread from another infection in a non-adjacent location in the extended organism of the host. http://purl.obolibrary.org/obo/IDO_0000635 source of infection role http://purl.obolibrary.org/obo/BFO_0000023 role Role borne by a material entity that contains a site from which an infectious agent is transmitted. http://purl.obolibrary.org/obo/IDO_0000638 nursing-home acquired infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection resulting from a transmission process that unfolds in a nursing home. http://purl.obolibrary.org/obo/IDO_0000639 infectious human pathogen http://purl.obolibrary.org/obo/IDO_0000528 pathogen Pathogen disposed to infect human hosts. http://purl.obolibrary.org/obo/IDO_0000640 acquired immunodeficiency http://purl.obolibrary.org/obo/IDO_0000617 immunodeficiency Immunodeficiency that is not caused by a genetic predisposition. http://purl.obolibrary.org/obo/IDO_0000642 simple infection http://purl.obolibrary.org/obo/IDO_0000586 infection Infection comprised of infectious organisms or structures all of the same Species. http://purl.obolibrary.org/obo/IDO_0000643 re-emerging pathogen http://purl.obolibrary.org/obo/IDO_0000528 pathogen Pathogen whose infection incidence is increasing in a host population as a result of changes in the biology of the host or pathogen, or changes in their interactions. http://purl.obolibrary.org/obo/IDO_0000650 colonization of human http://purl.obolibrary.org/obo/IDO_0000604 colonization of host Colonization of host in a human. http://purl.obolibrary.org/obo/IDO_0000653 reverse zoonosis http://purl.obolibrary.org/obo/IDO_0000436 infectious disease Infectious disease inhering in an infectious disorder composed of pathogens bearing reverse zoonotic dispositions. http://purl.obolibrary.org/obo/IDO_0000655 transmissibility disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition Disposition to undergo a transmission process. http://purl.obolibrary.org/obo/IDO_0000656 horizontal pathogen transmission process http://purl.obolibrary.org/obo/TRANS_0000000 pathogen transmission process Pathogen transmission process in which a pathogen is transmitted from one host to another of the same species, and the two hosts are not in a parent-child relationship. http://purl.obolibrary.org/obo/IDO_0000657 process that results in death http://purl.obolibrary.org/obo/BFO_0000015 process Process that results in death. http://purl.obolibrary.org/obo/IDO_0000659 susceptible organism http://purl.obolibrary.org/obo/OBI_0100026 organism Organism that is not infected with an infectious agent and lacks protective immunity to the infectious agent. http://purl.obolibrary.org/obo/IDO_0000663 negative regulation of life-sustaining process http://purl.obolibrary.org/obo/GO_0065007 biological regulation Process that stops, prevents, or reduces the frequency, rate or extent of a life-sustaining process. http://purl.obolibrary.org/obo/IDO_0000665 source of infection http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity bearing a source of infection role. http://purl.obolibrary.org/obo/OGMS_0000020 symptom http://purl.obolibrary.org/obo/BFO_0000003 occurrent Process experienced by a patient which can only be experienced by the patient, that is hypothesized to be clinically relevant. http://purl.obolibrary.org/obo/OGMS_0000045 disorder http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity that is a clinically abnormal part of an extended organism. http://purl.obolibrary.org/obo/IDO_0001124 asymptomatic carrier role http://purl.obolibrary.org/obo/IDO_0000415 pathogen host role Pathogen host role borne by an organism whose extended organism contains a pathogen bearing an infectious disposition towards the host, and the host has no symptoms of the infectious disease caused by the pathogen. http://purl.obolibrary.org/obo/IDO_0001343 latency interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region One-dimensional temporal region beginning with the establishing of an infection in a host and ending when the host becomes contagious. http://purl.obolibrary.org/obo/VIDO_0001331 viral load http://purl.obolibrary.org/obo/BFO_0000019 quality Quality inhering in a portion of fluid that is the proportion of virions to volume of that portion of fluid http://purl.obolibrary.org/obo/ERO_0000008 antibody reagent http://purl.obolibrary.org/obo/ERO_0000006 reagent Reagent that is comprised of immunoglobulins produced by B cells in response to an antigen. http://purl.obolibrary.org/obo/ERO_0000337 viral plaque assay http://purl.obolibrary.org/obo/OBI_0000070 assay Assay used to determine viral titers. http://purl.obolibrary.org/obo/ERO_0000347 intervention http://purl.obolibrary.org/obo/OBI_0000011 planned process Planned process used to influence one or more factors in a research study, and the independent variable in an interventional study wherein the influence is measured or evaluated. http://purl.obolibrary.org/obo/ERO_0000671 serology assay http://purl.obolibrary.org/obo/OBI_0000070 assay Assay analyzing blood serum and other bodily fluids, to detect the presence of serum antibodies. http://purl.obolibrary.org/obo/ERO_0001362 immunoassay http://purl.obolibrary.org/obo/OBI_0000070 assay Assay measuring the concentration of a substance in a material by exploiting binding between an analyte and a corresponding detection antibody. http://purl.obolibrary.org/obo/IDO_0001096 pathogen transporter role http://purl.obolibrary.org/obo/BFO_0000023 role Role borne by a material entity in or on which a pathogen is located, from which the pathogen may be transmitted to a new host. http://www.ebi.ac.uk/efo/EFO_0009433 lower respiratory tract disease http://www.ebi.ac.uk/efo/EFO_0000684 respiratory system disease Respiratory system disease located in the lower respiratory tract. http://purl.obolibrary.org/obo/IDO_0001089 cidal agent http://purl.obolibrary.org/obo/BFO_0000040 material entity Material entity with a cidal agent disposition that is realized in a process of killing bacteria, fungi, parasites, or viruses. http://purl.obolibrary.org/obo/IDO_0001065 acellular structure aggregate http://purl.obolibrary.org/obo/BFO_0000027 object aggregate Aggregate of acellular structures. http://purl.obolibrary.org/obo/IDO_0001377 pathogen surveillance http://purl.obolibrary.org/obo/VSMO_ surveillance process Surveillance process aiming to produce information about one or several objects, in the form of microorganisms, which have the role of pathogen. http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity designative information content entity http://purl.obolibrary.org/obo/IAO_0000030 information content entity Information Content Entity that consists of a set of symbols that denote some Entity. http://purl.obolibrary.org/obo/IDO_0001378 vector surveillance http://purl.obolibrary.org/obo/VSMO_ surveillance process Surveillance process aiming to produce information about one or several objects, in the form of arthropods, which have the role of serving as biological pathogen vectors. http://purl.obolibrary.org/obo/IDO_0001025 fungicidal disposition http://purl.obolibrary.org/obo/IDO_0001092 cidal agent disposition Disposition to kill fungi. http://purl.obolibrary.org/obo/IDO_0001027 bactericidal disposition http://purl.obolibrary.org/obo/IDO_0001092 cidal agent disposition Disposition to kill bacteria. http://www.ebi.ac.uk/efo/EFO_0000684 respiratory system disease http://purl.obolibrary.org/obo/OGMS_0000031 disease Disease that occurs in different organs functioning in respiration and consisting especially of the nose, nasal passages, nasopharynx, larynx, trachea, bronchi, and lungs. http://purl.obolibrary.org/obo/IDO_0001345 latency end process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the end of a latency period. http://purl.obolibrary.org/obo/NCBITaxon_2731342 single-stranded DNA virus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus Virus with genetic material encoded in single-stranded DNA and replicates using DNA polymerase. http://purl.obolibrary.org/obo/IDO_0001357 communicability end process boundary http://purl.obolibrary.org/obo/BFO_0000035 process boundary Process boundary marking the end of a communicability interval. http://purl.obolibrary.org/obo/IDO_0001165 endotoxin disposition http://purl.obolibrary.org/obo/IDO_0000426 toxin disposition Toxin disposition that is a structural component of a pathogen and is realized only during cytolsis. http://purl.obolibrary.org/obo/IDO_0001166 enterotoxin disposition http://purl.obolibrary.org/obo/IDO_0000427 exotoxin disposition Exotoxin disposition ithat is realized in a process of damaging intestinal mucosa cells. http://purl.obolibrary.org/obo/IDO-COVID-19_0001362 mycovirus http://purl.obolibrary.org/obo/NCBITaxon_10239 virus http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000011 spatiotemporal region http://purl.obolibrary.org/obo/BFO_0000003 occurrent http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000004 independent continuant http://purl.obolibrary.org/obo/BFO_0000009 two-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000018 zero-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000026 one-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000028 three-dimensional spatial region http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000148 zero-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000008 temporal region http://purl.obolibrary.org/obo/BFO_0000182 history http://purl.obolibrary.org/obo/BFO_0000015 process http://purl.obolibrary.org/obo/BFO_0000034 function http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000016 disposition http://purl.obolibrary.org/obo/BFO_0000017 realizable entity http://purl.obolibrary.org/obo/BFO_0000019 quality http://purl.obolibrary.org/obo/BFO_0000020 specifically dependent continuant http://purl.obolibrary.org/obo/IAO_0000030 information content entity http://purl.obolibrary.org/obo/BFO_0000031 generically dependent continuant http://purl.obolibrary.org/obo/VIDO_0001365 eclipse interval http://purl.obolibrary.org/obo/BFO_0000038 one-dimensional temporal region http://purl.obolibrary.org/obo/BFO_0000027 object aggregate http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000030 object http://purl.obolibrary.org/obo/BFO_0000040 material entity http://purl.obolibrary.org/obo/BFO_0000006 spatial region http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/BFO_0000029 site http://purl.obolibrary.org/obo/BFO_0000141 immaterial entity http://purl.obolibrary.org/obo/IDO_0001001 infection incidence proportion profile http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/IDO_0001002 infection incidence rate profile http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/IDO_0001000 infection incidence profile http://purl.obolibrary.org/obo/BFO_0000144 process profile http://purl.obolibrary.org/obo/NCBITaxon_2 bacteria http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_2759 eukaryota http://purl.obolibrary.org/obo/OBI_0100026 organism http://purl.obolibrary.org/obo/NCBITaxon_9606 homo sapiens http://purl.obolibrary.org/obo/NCBITaxon_2759 eukaryota http://purl.obolibrary.org/obo/VIDO_0001188 respiratory droplet http://purl.obolibrary.org/obo/UBERON_0006538 respiratory secretion http://purl.obolibrary.org/obo/VIDO_0001336 establishment of localization in virus host http://purl.obolibrary.org/obo/IDO_0000625 establishment of localization in host http://purl.obolibrary.org/obo/IDO_0000438 invasion disposition Invasion factor; invasin Disposition borne by a biological macromolecule that is the disposition to facilitate breach of and entry through host barriers. http://purl.obolibrary.org/obo/IDO_0000450 pathogenic disposition pathogenicity Disposition borne by a material entity to establish localization in or produce toxins that can be transmitted to an organism or acellular structure, either of which may form disorder in the entity or immunocompetent members of the entity’s species. http://purl.obolibrary.org/obo/IDO_0000530 primary pathogen principal pathogen Pathogen bearing a primary infectious disposition. http://purl.obolibrary.org/obo/IDO_0000532 definitive host primary host Host bearing a definitive host role. http://purl.obolibrary.org/obo/IDO_0000533 intermediate host secondary host Host bearing an intermediate host role. http://purl.obolibrary.org/obo/IDO_0000535 dead-end host incidental host Host bearing a dead-end host role. http://purl.obolibrary.org/obo/IDO_0000548 invasion factor invasin Biological macromolecule that has an invasion disposition. http://purl.obolibrary.org/obo/IDO_0000557 adhesion factor adhesion molecule Biological macromolecule that has an adhesion disposition. http://purl.obolibrary.org/obo/IDO_0000589 immunodeficient organism immunocompromised organism Organism that has an immunodeficiency. http://purl.obolibrary.org/obo/IDO_0000621 acquired immunity to infectious agent adaptive immunity to infectious agent Immunity to pathogen that inheres in an organism in virtue of antigen receptors encoded by somatically diversified genes in the organism's genome and expressed by cells that have undergone selection during a primary immune response in that organism. http://purl.obolibrary.org/obo/IDO_0000630 hospital-acquired infection nosocomial infection Infection resulting from a transmission process that unfolds in a hospital. http://purl.obolibrary.org/obo/IDO_0000654 opportunistic pathogen opportunist Pathogen with an opportunistic infectious disposition. http://purl.obolibrary.org/obo/IDO_0001005 negative regulation of establishment of localization Immunosuppressed organism that is experiencing pathologic immunosuppression. http://purl.obolibrary.org/obo/IDO_0001010 pathogen death process boundary Process boundary that marks the end of the life cycle of a pathogen. http://purl.obolibrary.org/obo/CHEBI_24432 biological role Role inhering in a molecular entity or part of that entity, realized in biological processes. http://purl.obolibrary.org/obo/IDO_0001054 infectious structure Acellular structure that has an infectious disposition. http://purl.obolibrary.org/obo/IDO_0000586 infection Part of an organism that itself is part of an extended organism with a pathogen as part, which participates in the formation of the infection. http://purl.obolibrary.org/obo/OBI_0000047 processed material Material entity that is created or changed during material processing. http://purl.obolibrary.org/obo/OBI_0000406 PCR product Double stranded DNA that is the specified output of a polymerase chain reaction http://purl.obolibrary.org/obo/OBI_0000415 polymerase chain reaction Enzymatic amplification in which a DNA polymerase is used to amplify a piece of DNA by in vitro enzymatic replication. http://purl.obolibrary.org/obo/OBI_0000552 reverse transcribed PCR Material processing amplifying cDNA during a PCR reaction while the cDNA results from a retrotranscription of messenger RNA isolated from a material entity. http://purl.obolibrary.org/obo/OBI_1110001 epitope Molecular entity bearing the epitope role. http://purl.obolibrary.org/obo/IDO_0001127 asymptomatic infectious structure carrier Infectious structure host bearing an asymptomatic carrier role. http://purl.obolibrary.org/obo/IDO_0001349 infection end temporal region Zero-dimensional temporal region occupied by an infection end process boundary. http://purl.obolibrary.org/obo/VIDO_0001194 viral pathogenesis Pathogenesis process realization of a pathogenic disposition inhering in a virus or virus population, having at least the proper process parts: (1) pathogen transmission, (2) establishment of localization in host, (3) process of establishing a viral infection, and (4) appearance of a virus disorder. http://purl.obolibrary.org/obo/IDO_0001041 bactericidal Cidal agent with a bactericidal disposition that is realized in a process of killing bacteria. http://purl.obolibrary.org/VIDO_0001123 viral disease Infectious disease inhering in a virus disorder that is a disorder due to the presence of the virus. http://purl.obolibrary.org/obo/IDO_0001196 pathogen vector Pathogen transporter bearing a pathogen vector role. http://purl.obolibrary.org/obo/IDO_0001350 latency end temporal region Zero-dimensional temporal region occupied by a latency end process boundary. http://purl.obolibrary.org/obo/VIDO_0000564 viricide Cidal agent with a viricidal disposition that is realized in a process of killing viruses. http://purl.obolibrary.org/obo/VIDO_0001004 virostatic Static agent bearing a virostatic disposition. http://purl.obolibrary.org/obo/VIDO_0001022 viricidal disposition Disposition to kill viruses. http://purl.obolibrary.org/obo/VIDO_0001024 virostatic disposition A disposition to inhibit the reproduction of viruses. http://purl.obolibrary.org/obo/VIDO_0001128 virus host Infectious structure host whose extended organism has some virus part. http://purl.obolibrary.org/obo/VIDO_0001169 subclinical virus infection Subclinical infection that is part of a virus host. http://purl.obolibrary.org/obo/VIDO_0001190 respiratory droplet virus fomite Respiratory droplet fomite with virus part. http://purl.obolibrary.org/obo/VIDO_0001267 viral adhesion disposition Adhesion disposition borne by a macromolecule part of a virus that is the disposition to participate in a virus attachment process http://purl.obolibrary.org/obo/VIDO_0001333 bacteriophage http://purl.obolibrary.org/obo/vido.owl http://purl.obolibrary.org/obo/VIDO_0001334 virophage Virus which infects and replicates within or on viruses. http://purl.obolibrary.org/obo/ido.owl/IDO_0001072 site of infection Anatomical space in which an infection is located. http://purl.obolibrary.org/obo/ido.owl/IDO_0001157 infectious disposition Pathogenic disposition borne by a pathogen to be transmitted to a host and become part of an infection in that host or immunocompetent members of the same species as the host. http://purl.obolibrary.org/obo/IDO_0000444 protective resistance Disposition inhering in an acellular structure or organism, with a part having a disposition to mitigate damage to the entity from invasive or internal threats, which is realized in one or more negative biological regulation process. http://purl.obolibrary.org/obo/IDO_0000531 host Object bearing a host role. http://purl.obolibrary.org/obo/IDO_0001351 communicability end temporal region Zero-dimensional temporal region occupied by a communicability end process boundary. http://purl.obolibrary.org/obo/IDO_0001085 pathogen death temporal region Zero-dimensional temporal region occupied by a pathogen death process boundary. http://purl.obolibrary.org/obo/IDO_0001093 infectious structure host Pathogen host bearing an infectious structure host role. http://purl.obolibrary.org/obo/IDO_0001167 symptomatic infectious structure carrier Infectious structure host bearing a symptomatic carrier role. http://purl.obolibrary.org/obo/IDO_0001094 infectious structure host role Pathogen host role borne by an object or organism whose extended organism contains an infectious structure. http://purl.obolibrary.org/obo/IDO_0000407 primary infectious disposition Infectious disposition to become part of a disorder in immunocompetent organisms. http://purl.obolibrary.org/obo/IDO_0000408 symbiont host role Host role borne by an organism whose extended organism provides an environment supportive for the survival, growth, maturation, or reproduction of an object contained as a proper part. http://purl.obolibrary.org/obo/IDO_0000414 infectious agent host role Pathogen host role borne by an organism whose extended organism contains an infectious agent. http://purl.obolibrary.org/obo/IDO_0000415 pathogen host role Host role borne by an organism or acellular structure having a pathogen as part. http://purl.obolibrary.org/obo/IDO_0000424 reservoir of pathogen role Role borne by a material entity in which pathogens can persist, and from which they can be transmitted to hosts. http://purl.obolibrary.org/obo/IDO_0000425 virulence factor disposition Disposition borne by a biological macromolecule produced by a pathogen that is a disposition to undergo processes that increase the pathogen's virulence. http://purl.obolibrary.org/obo/IDO_0000426 toxin disposition Disposition to cause I) malfunction of cells, ii) damage to extracellular matrix, or iii) damage of cells to a degree that can result in cell death. http://purl.obolibrary.org/obo/IDO_0000430 pathogen portal of entry role Role borne by an anatomical entity that serves as the site through which a pathogen enters a host. http://purl.obolibrary.org/obo/IDO_0000431 pathogen portal of exit role Role borne by an anatomical entity that serves as the site through which a pathogen exits a host. http://purl.obolibrary.org/obo/IDO_0000451 invasive disposition Disposition borne by a pathogen that is the disposition to penetrate the epithelial barriers of an organism of another species. http://purl.obolibrary.org/obo/IDO_0000455 collective disposition Disposition that inheres in a collection of entities in virtue of the individual dispositions of the constituents of that collection. http://purl.obolibrary.org/obo/IDO_0000457 immunocompetent organism Organism that has immunocompetence. http://purl.obolibrary.org/obo/IDO_0000458 contagiousness Disposition that inheres in a pathogen host and is a disposition to horizontally transmit that pathogen to organisms of the same species as the host, through casual contact, with a high likelihood of realization. http://purl.obolibrary.org/obo/IDO_0000459 colonized host Host that contains a colony in or on its extended organism. http://purl.obolibrary.org/obo/IDO_0000472 extracellular infection Infection in which pathogen parts persist in the extracellular space of the host. http://purl.obolibrary.org/obo/IDO_0000504 infectious disorder Disorder that is part of an extended organism which has an infectious pathogen part, that exists as a result of a process of formation of disorder initiated by the infectious pathogen. http://purl.obolibrary.org/obo/IDO_0000522 symbiont Organism bearing a symbiont role. http://purl.obolibrary.org/obo/IDO_0000524 mutualist Symbiont bearing a mutualist role. http://purl.obolibrary.org/obo/IDO_0000525 commensal Symbiont bearing a commensal role. http://purl.obolibrary.org/obo/IDO_0000526 parasite Symbiont bearing a parasite role. http://purl.obolibrary.org/obo/IDO_0000528 pathogen Material entity bearing a pathogenic disposition. http://purl.obolibrary.org/obo/IDO_0000537 infectious agent host Pathogen host bearing an infectious agent host role. http://purl.obolibrary.org/obo/IDO_0000538 pathogen host Host bearing a pathogen host role. http://purl.obolibrary.org/obo/IDO_0000539 asymptomatic infectious agent carrier Infectious agent host bearing the infectious agent carrier role. http://purl.obolibrary.org/obo/IDO_0000543 pathogen vehicle Pathogen transporter bearing a pathogen vehicle role. http://purl.obolibrary.org/obo/IDO_0000544 fomite Pathogen vehicle bearing a fomite role. http://purl.obolibrary.org/obo/IDO_0000545 infectious agent reservoir Material entity bearing a pathogen reservoir role. http://purl.obolibrary.org/obo/IDO_0000547 virulence factor A macromolecule produced by a pathogen and that has a virulence factor disposition. http://purl.obolibrary.org/obo/IDO_0000549 toxin Molecular entity that has a toxin disposition. http://purl.obolibrary.org/obo/IDO_0000550 exotoxin Toxin bearing an exotoxin disposition. http://purl.obolibrary.org/obo/IDO_0000553 pathogen portal of entry Anatomical entity bearing a pathogen portal of entry role. http://purl.obolibrary.org/obo/IDO_0000566 primary infection Infectious disorder bearing a primary infection role. http://purl.obolibrary.org/obo/IDO_0000567 secondary infection Infectious disorder bearing a secondary infection role. http://purl.obolibrary.org/obo/IDO_0000570 subclinical infection Infection that is part of an asymptomatic carrier. http://purl.obolibrary.org/obo/IDO_0000576 innate immunity to infectious agent Immunity to pathogen that inheres in an organism in virtue of germline encoded components that directly recognize components of potential pathogens. http://purl.obolibrary.org/obo/IDO_0000578 humoral immunity to infectious agent Immunity to pathogen that inheres in an organism in virtue of components of its circulating body fluid, e.g. blood, lymph, hemolymph. http://purl.obolibrary.org/obo/IDO_0000596 infectious agent Organism that has an infectious disposition. http://purl.obolibrary.org/obo/IDO_0000618 immunocompetence Disposition inhering in an organism that is the disposition to mount a normal immune response. http://purl.obolibrary.org/obo/IDO_0000619 immunosuppressive disposition Disposition whose realization negatively regulates an immune response. http://purl.obolibrary.org/obo/IDO_0000623 communicability Infectious disposition to be transmitted from one organism to another of the same species by horizontal transmission. http://purl.obolibrary.org/obo/IDO_0000626 appearance of disorder Process by which a disorder comes into existence. http://purl.obolibrary.org/obo/IDO_0000627 acute infection Infectious disorder that is the physical basis for an unfolding acute infectious disease course. http://purl.obolibrary.org/obo/ERO_0000006 reagent Processed material bearing a reagent role. http://purl.obolibrary.org/obo/IDO_0001352 incubation end temporal region Zero-dimensional temporal region occupied by an incubation end process boundary. http://purl.obolibrary.org/obo/IDO_0001353 communicability start temporal region Zero-dimensional temporal region occupied by a communicability start process boundary. http://purl.obolibrary.org/obo/IDO_0001198 mechanical vector Pathogen vector bearing a mechanical vector role. http://purl.obolibrary.org/obo/IDO_0001095 pathogen transporter Material entity bearing a pathogen transporter role. http://purl.obolibrary.org/obo/IDO_0001126 asymptomatic carrier Pathogen host with an infection as part but exhibits no signs or symptoms. http://purl.obolibrary.org/obo/IDO_0001199 biological vehicle Pathogen vehicle bearing a biological vehicle role. http://purl.obolibrary.org/obo/IDO_0001168 symptomatic infectious agent carrier Infectious agent host bearing an infectious agent carrier role. http://purl.obolibrary.org/obo/IDO_0001197 biological vector Pathogen vector bearing a biological vector role. http://purl.obolibrary.org/obo/IDO_0001134 symptomatic carrier Pathogen host with infection as part that exhibits symptoms. http://purl.obolibrary.org/obo/BFO_0000001 entity http://purl.obolibrary.org/obo/RO_0002234 has output http://purl.obolibrary.org/obo/RO_0000057 has participant produces p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. http://purl.obolibrary.org/obo/RO_0000079 function of http://purl.obolibrary.org/obo/RO_0000052 inheres in is function of a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000080 quality of http://purl.obolibrary.org/obo/RO_0000052 inheres in quality_of a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000085 has function http://purl.obolibrary.org/obo/RO_0000053 bearer of has_function a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000086 has quality http://purl.obolibrary.org/obo/RO_0000053 bearer of has_quality a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002350 member of http://purl.obolibrary.org/obo/BFO_0000050 part of member part of is member of is a mereological relation between a item and a collection. http://purl.obolibrary.org/obo/RO_0000087 has role http://purl.obolibrary.org/obo/RO_0000053 bearer of has_role a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000081 role of http://purl.obolibrary.org/obo/RO_0000052 inheres in role_of a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/OBI_0000295 is specified input of http://purl.obolibrary.org/obo/RO_0000056 participates in Participates in relation between a planned process and a continuant participating in that process that is not created during the process, where the presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/OBI_0000312 is specified output of http://purl.obolibrary.org/obo/RO_0000056 participates in Participates in relation between a planned process and a continuant participating in that process where the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. http://purl.obolibrary.org/obo/RO_0002351 has member http://purl.obolibrary.org/obo/BFO_0000051 has part has member is a mereological relation between a collection and an item. http://purl.obolibrary.org/obo/RO_0000091 has disposition http://purl.obolibrary.org/obo/RO_0000053 bearer of a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0002212 negatively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y http://purl.obolibrary.org/obo/RO_0002213 positively regulates http://purl.obolibrary.org/obo/RO_0002211 regulates x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y http://purl.obolibrary.org/obo/RO_0000092 disposition of http://purl.obolibrary.org/obo/RO_0000052 inheres in http://purl.obolibrary.org/obo/OBI_0000293 has specified input http://purl.obolibrary.org/obo/RO_0000057 has participant http://purl.obolibrary.org/obo/OBI_0000299 has specified output http://purl.obolibrary.org/obo/RO_0000057 has participant http://purl.obolibrary.org/obo/RO_0002297 results in formation of http://purl.obolibrary.org/obo/IDO_0000660 results in http://purl.obolibrary.org/obo/RO_0000052 inheres in inheres_in a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000053 bearer of is bearer of a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence http://purl.obolibrary.org/obo/RO_0000056 participates in participates_in a relation between a continuant and a process, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0000057 has participant has_participant a relation between a process and a continuant, in which the continuant is somehow involved in the process http://purl.obolibrary.org/obo/RO_0001000 derives from derives_from a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001001 derives into derives_into a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity http://purl.obolibrary.org/obo/RO_0001015 location of location_of a relation between two independent continuants, the location and the target, in which the target is entirely within the location http://purl.obolibrary.org/obo/RO_0002000 2D boundary of is boundary of a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0002002 has 2D boundary has_2D_boundary a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity http://purl.obolibrary.org/obo/RO_0001025 located in located_in a relation between two independent continuants, the target and the location, in which the target is entirely within the location http://purl.obolibrary.org/obo/BFO_0000051 has part has_part a core relation that holds between a whole and its part http://purl.obolibrary.org/obo/BFO_0000050 part of part_of a core relation that holds between a part and its whole http://purl.obolibrary.org/obo/BFO_0000066 occurs in unfolds_in b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t http://purl.obolibrary.org/obo/BFO_0000067 contains process [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t http://purl.obolibrary.org/obo/RO_0000058 is concretized as A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants. http://purl.obolibrary.org/obo/RO_0000059 concretizes A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant. http://purl.obolibrary.org/obo/RO_0002211 regulates x regulates y if and only if the x is the realization of a function to exert an effect on the frequency, rate or extent of y http://purl.obolibrary.org/obo/BFO_0000054 realized in realized_in http://purl.obolibrary.org/obo/BFO_0000062 preceded by preceded_by http://purl.obolibrary.org/obo/BFO_0000055 realizes http://purl.obolibrary.org/obo/BFO_0000063 precedes http://purl.obolibrary.org/obo/IDO_0000664 has_material_basis_in http://purl.obolibrary.org/obo/BFO_999999 occupies temporal region http://purl.obolibrary.org/obo/IDO_0000660 results in