<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/BCGO?iri=http://purl.obolibrary.org/obo/OBI_0000706"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/OBI_0000293 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
        <rdfs:label xml:lang="en">has_specified_input</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/RO_0000057 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000057">
        <rdfs:label xml:lang="en">has participant</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/RO_0002087 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002087">
        <rdfs:label xml:lang="en">immediately preceded by</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000696 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000696">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AB SOLiD System</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000706 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000706">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SOLiD sequencing</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000723"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002087"/>
                <someValuesFrom>
                    <Class>
                        <intersectionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0302902"/>
                            <Restriction>
                                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002087"/>
                                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0600048"/>
                            </Restriction>
                        </intersectionOf>
                    </Class>
                </someValuesFrom>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom>
                    <Class>
                        <unionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000722"/>
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000736"/>
                        </unionOf>
                    </Class>
                </someValuesFrom>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000023089"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000696"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID: 19119315. High-resolution analysis of the 5&#39;-end transcriptome using a next generation DNA sequencer.  Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K. PLoS One. 2009;4(1):e4108.</ns3:IAO_0000112>
        <ns3:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Philippe Rocca-Serra</ns3:IAO_0000117>
        <ns3:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SOLiD sequencing</ns3:IAO_0000111>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adapted from Wikipedia and Applied Biosystems web site</ns3:IAO_0000119>
        <ns3:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">is a DNA sequencing which allows sequence identification by relying on the following steps:
1. Primers hybridize to the P1 adapter sequence within the library template.
2. A set of four fluorescently labeled di-base probes compete for ligation to the sequencing primer. Specificity of the di-base probe is achieved by interrogating every 1st and 2nd base in each ligation reaction.
3. Multiple cycles of ligation, detection and cleavage are performed with the number of cycles determining the eventual read length.
4. Following a series of ligation cycles, the extension product is removed and the template is reset with a primer complementary to the n-1 position for a second round of ligation cycles</ns3:IAO_0000115>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000722 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000722">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">paired-end library</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000723 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000723">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DNA sequencing by ligation</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000736 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000736">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">single fragment library</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0302902 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302902">
        <rdfs:label xml:lang="en">immobilization</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0600048 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600048">
        <rdfs:label xml:lang="en">vector mediated amplification</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PR_000023089 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PR_000023089">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DNA ligase</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000120 -->

    <Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
        <rdfs:label xml:lang="en">metadata complete</rdfs:label>
    </Thing>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



