has part has_specified_input has_specified_output achieves_planned_objective has participant has role protein complex evaluant role analyte measurement objective DNA sequencing immunoprecipitation cross linking protein and DNA interaction identification objective DNA sequence data chromatin interaction analysis by paired-end tag sequencing Person: Venkat Malladi, Chris Stoeckert, Jie Zheng ChIA-PET assay ENCODE project ChIA-PET Zhang, et al. ChIA-PET analysis of transcriptional chromatin interactions. Methods. 2012 Nov;58(3):289-99. [PMID:22926262] chromatin interaction analysis by paired-end tag sequencing http://en.wikipedia.org/wiki/ChIA-PET An assay that incorporates chromatin immunoprecipitation (ChIP)-based enrichment, chromatin proximity ligation, Paired-End Tags, and high-throughput sequencing to determine de novo long-range chromatin interactions genome-wide. paired-end library preparation assay using chromatin immunoprecipitation DNA sequencer sequencing assay metadata complete