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    <!-- http://purl.obolibrary.org/obo/ECO_0000221 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/ECO_0000221">
        <rdfs:label>high throughput nucleotide sequencing assay evidence</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/ECO_0000224 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/ECO_0000224">
        <rdfs:label>SOLiD sequencing evidence</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ECO_0000221"/>
        <ns3:IAO_0000115>A type of high throughput nucleotide sequencing evidence in which sequence is determined through rounds of ligation-based sequencing with fluorescently-labeled Di-base probes and cleavage, after which the template is reset, with a primer offset by one base, for subsequent rounds of ligation.</ns3:IAO_0000115>
        <rdfs:comment>SOLiD sequencing technology is based on sequencing by ligation. After library preparation, emulsion PCR and bead enrichment are performed, including 3&#39; modification of templates on selected beads to allow covalent bonding to a slide. 3&#39; modified beads are attached to a glass slide and primers are added. Four fluorescently labeled di-base probes are added and multiple cycles of ligation, detection and cleavage are performed. The number of cycles determines read length. After a number of ligation cycles, the extension product is removed and another round of ligation cycles is performed with a new primer complimentary to the n-1 position of the template. Five rounds of primer reset are performed for each sequence tag.

Samples are prepared by fragmentation of a sample library, adaptor ligation, emulsion PCR, and attachment of resultant beads to glass slides.</rdfs:comment>
        <oboInOwl:created_by>mchibucos</oboInOwl:created_by>
        <oboInOwl:creation_date>2010-11-15T04:17:41Z</oboInOwl:creation_date>
        <oboInOwl:id>ECO:0000224</oboInOwl:id>
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