Sequence signature matches Sequence profile alignment Sequence-profile alignment Profile-profile alignment Protein secondary database search results This includes reports of hits from a search of a protein secondary or domain database. Data associated with the search or alignment might also be included, e.g. ranked list of best-scoring sequences, a graphical representation of scores etc. beta12orEarlier Sequence profile matches Sequence motif matches Sequence profile hits Search results (protein secondary database) A "sequence-profile alignment" is an alignment of one or more molecular sequence(s) to one or more sequence profile(s) (each profile typically representing a sequence alignment). Sequence motif hits Report on the location of matches ("hits") between sequences, sequence profiles, motifs (conserved or functional patterns) and other types of sequence signatures. A "profile-profile alignment" is an alignment of two sequence profiles, each profile typically representing a sequence alignment. Sequence signature data Alignment