<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/EDAM?iri=http://edamontology.org/format_3911"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://edamontology.org/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://edamontology.org/created_in"/>
    <AnnotationProperty rdf:about="http://edamontology.org/organisation"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://edamontology.org/formats"/>
    <AnnotationProperty rdf:about="http://edamontology.org/documentation"/>
    <AnnotationProperty rdf:about="http://edamontology.org/bio"/>
    <AnnotationProperty rdf:about="http://edamontology.org/information_standard"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
    <AnnotationProperty rdf:about="http://edamontology.org/file_extension"/>
    <AnnotationProperty rdf:about="http://edamontology.org/example"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDefinition"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://edamontology.org/is_format_of -->

    <ObjectProperty rdf:about="http://edamontology.org/is_format_of">
        <rdfs:label>is format of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://edamontology.org/data_2190 -->

    <Class rdf:about="http://edamontology.org/data_2190">
        <rdfs:label>Sequence checksum</rdfs:label>
    </Class>
    


    <!-- http://edamontology.org/format_2333 -->

    <Class rdf:about="http://edamontology.org/format_2333">
        <rdfs:label>Binary format</rdfs:label>
    </Class>
    


    <!-- http://edamontology.org/format_2571 -->

    <Class rdf:about="http://edamontology.org/format_2571">
        <rdfs:label>Raw sequence format</rdfs:label>
    </Class>
    


    <!-- http://edamontology.org/format_3911 -->

    <Class rdf:about="http://edamontology.org/format_3911">
        <rdfs:label>msh</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2333"/>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2571"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://edamontology.org/is_format_of"/>
                <someValuesFrom rdf:resource="http://edamontology.org/data_2190"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns4:created_in>1.22</ns4:created_in>
        <oboInOwl:hasExactSynonym>Mash sketch</oboInOwl:hasExactSynonym>
        <ns4:file_extension>msh</ns4:file_extension>
        <oboInOwl:hasDefinition>Mash sketch is a format for sequence / sequence checksum information. To make a sketch, each k-mer in a sequence is hashed, which creates a pseudo-random identifier. By sorting these hashes, a small subset from the top of the sorted list can represent the entire sequence.</oboInOwl:hasDefinition>
        <oboInOwl:hasExactSynonym>min-hash sketch</oboInOwl:hasExactSynonym>
        <ns4:organisation rdf:resource="http://bnbi.org"/>
        <oboInOwl:inSubset rdf:resource="http://edamontology.org/bio"/>
        <oboInOwl:inSubset rdf:resource="http://edamontology.org/formats"/>
        <ns4:information_standard rdf:resource="https://capnproto.org/cxx.html"/>
        <ns4:documentation rdf:resource="https://doi.org/10.1186/s13059-016-0997-x"/>
        <ns4:documentation rdf:resource="https://en.wikipedia.org/wiki/MinHash"/>
        <ns4:documentation rdf:resource="https://mash.readthedocs.io/en/latest/sketches.html"/>
        <ns4:example rdf:resource="https://mash.readthedocs.io/en/latest/tutorials.html#querying-read-sets-against-an-existing-refseq-sketch"/>
        <ns4:documentation rdf:resource="https://raw.githubusercontent.com/marbl/Mash/master/src/mash/capnp/MinHash.capnp"/>
        <ns4:organisation rdf:resource="https://www.genome.gov/27562809/phillippy-group/"/>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



