<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/GENEPIO?iri=http://purl.obolibrary.org/obo/GENEPIO_0001561"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
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    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
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     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000039 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
        <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/GENEPIO_0001561 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001561">
        <rdfs:label xml:lang="en">assembly genome size</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GENEPIO_0001568"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000039"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UO_0000244"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:comment xml:lang="en">As noted in Quast documentation: &quot; The total assembly size may increase (and in some cases exceeds the genome size) due to contaminants (see Chitsaz et al. (2011)), misassembled contigs, repeats, and hubs that contribute to multiple contigs. &quot;</rdfs:comment>
        <ns3:IAO_0000117 xml:lang="en">Damion Dooley</ns3:IAO_0000117>
        <ns3:IAO_0000115 xml:lang="en">The assembly genome size is the sum of all lengths of a sequence assembly&#39;s contigs.</ns3:IAO_0000115>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/genepio/core_slim.owl"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GENEPIO_0001568 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENEPIO_0001568">
        <rdfs:label xml:lang="en">assembly quality control datum</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/UO_0000244 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UO_0000244">
        <rdfs:label>base pair</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
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    <!-- http://purl.obolibrary.org/obo/IAO_0000428 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000428">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdfs:label xml:lang="en">requires discussion</rdfs:label>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/UO_0000244 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/UO_0000244">
        <rdfs:label>base pair</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



