<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/GENO?iri=http://purl.obolibrary.org/obo/GENO_0000010"?>
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     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
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     xmlns:ns2="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
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    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
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    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
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    ///////////////////////////////////////////////////////////////////////////////////////
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    <!-- http://purl.obolibrary.org/obo/GENO_0000010 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENO_0000010">
        <rdfs:label>background genome</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GENO_0000914"/>
        <ns2:IAO_0000112>The ZFIN background &#39;AB&#39; that serves as a reference as part of the genotype fgf8a^ti282a/+ (AB)</ns2:IAO_0000112>
        <oboInOwl:hasDbXref>OBI:genetic population background information</oboInOwl:hasDbXref>
        <ns2:IAO_0000115>A reference genome that represents the sequence of a genome from which a variant genome is derived  (through the introduction of sequence alterations).</ns2:IAO_0000115>
        <ns2:IAO_0000118>genomic background</ns2:IAO_0000118>
        <ns2:IAO_0000116>Here, a &#39;genomic background&#39; would differ form a &#39;reference genome&#39; in that &#39;background&#39; implies a derivation of the variant from the background (which is the case for most MOD strains), whereas a reference is simply meant as a target for comparison. But in a sense all background genomes are by default reference, in that the derived variant genome is compared against it.</ns2:IAO_0000116>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GENO_0000914 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENO_0000914">
        <rdfs:label xml:lang="en">reference genome</rdfs:label>
    </Class>
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