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     xml:base="http://www.w3.org/2002/07/owl"
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     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
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    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    


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    <!-- 
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    <!-- http://purl.obolibrary.org/obo/GENO_0000207 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/GENO_0000207">
        <rdfs:label>has_sequence_attribute</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
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    <!-- http://purl.obolibrary.org/obo/GENO_0000684 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENO_0000684">
        <rdfs:label xml:lang="en">novel replicon</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001059"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/GENO_0000207"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GENO_0000685"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:comment>Novel replicons are considered as an &#39;insertion&#39; in a genome, and as such, qualify as types of sequence_alterations and variant alleles.  There is no pre-existing locus that it modifies, however, and thus it is not really an &#39;allele of&#39; a named locus.  But conceptually, we still consider these to represent genetic variants and classify them as variant alleles.</rdfs:comment>
        <ns3:IAO_0000115>A genomic feature that represents an entirely new replicon in the genome, e.g. an extrachromosomal replicon or an extra copy of a chromosome.</ns3:IAO_0000115>
        <ns3:IAO_0000116>This class is defined so as to support classification of things like novel extrachromosomal replicons and aneusomic chromosomes as being variant alleles in a genome. These represent entirely new features in the genome - not variants of an existing feature.</ns3:IAO_0000116>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/GENO_0000484"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GENO_0000685 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GENO_0000685">
        <rdfs:label xml:lang="en">novel</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000102 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000102"/>
    


    <!-- http://purl.obolibrary.org/obo/SO_0001059 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0001059">
        <rdfs:label>sequence_alteration</rdfs:label>
    </Class>
    


    <!-- 
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    <!-- http://purl.obolibrary.org/obo/GENO_0000484 -->

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        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
        <rdfs:label xml:lang="en">exploratory term</rdfs:label>
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