<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/HINO?iri=http://purl.obolibrary.org/obo/HINO_0025719"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0002233 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
    


    <!-- http://purl.obolibrary.org/obo/RO_0002234 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002234"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/HINO_0007915 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/HINO_0007915">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DNA-PK:XRCC4:DNA ligase IV:DNA  complex associated with ligatable DNA ends</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/HINO_0008688 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/HINO_0008688">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ligated DNA double-strand break ends</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/HINO_0025719 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/HINO_0025719">
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Removal of repair proteins and ligation of the processed ends of the DNA double-strand break</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/INO_0000040"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UniProt_P12956"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/HINO_0008688"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002233"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/HINO_0007915"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UniProt_P49917"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UniProt_P13010"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UniProt_Q13426"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UniProt_P78527"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Authored: Matthews, L, 2003-09-07 08:47:00</rdfs:comment>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Presumably the proteins must be released from the DNA prior to end joining but precisely when this step occurs is not known. Mg-ATP and the protein kinase activity of DNA-PKcs are required for repair of DNA double strand breaks (Kurimasa et al, 1999; Kienker et al, 2000; Baumann and West, 1998). In vitro,  DNA-PK undergoes autophosphorylation which correlates with loss of protein kinase activity and disruption of the DNA-PKcs-Ku-DNA complex  (Chan and Lees-Miller, 1996; Douglas et al, 2001; 2002; Merkle et al, 2002). Moreover, autophosphorylation of DNA-PKcs is required for NHEJ in vivo  (Chan et al, 2002; Ding et al, 2003), suggesting that autophosphorylation may serve as a mechanism to remove DNA-PKcs from DNA prior to end joining.</rdfs:comment>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed10207111</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed10908332</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed11376007</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed12186630</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed12231622</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed12379113</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed12897153</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed8621537</ns3:IAO_0000119>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pubmed9826654</ns3:IAO_0000119>
        <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Reactome Database ID Release 4375928</rdfs:seeAlso>
        <ns3:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Reactome, http://www.reactome.org</ns3:IAO_0000119>
        <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ReactomeREACT_12</rdfs:seeAlso>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has a Stoichiometric coefficient of 2</rdfs:comment>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has a Stoichiometric coefficient of 4</rdfs:comment>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/INO_0000040 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/INO_0000040"/>
    


    <!-- http://purl.obolibrary.org/obo/UniProt_P12956 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UniProt_P12956"/>
    


    <!-- http://purl.obolibrary.org/obo/UniProt_P13010 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UniProt_P13010"/>
    


    <!-- http://purl.obolibrary.org/obo/UniProt_P49917 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UniProt_P49917"/>
    


    <!-- http://purl.obolibrary.org/obo/UniProt_P78527 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UniProt_P78527"/>
    


    <!-- http://purl.obolibrary.org/obo/UniProt_Q13426 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UniProt_Q13426"/>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



