<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/KISAO?iri=http://www.biomodels.net/kisao/KISAO%23KISAO_0000057"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:obo="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://www.biomodels.net/kisao/KISAO#">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#definition"/>
    <AnnotationProperty rdf:about="http://www.biomodels.net/kisao/KISAO#isImplementedIn"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000245 -->

    <ObjectProperty rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000245">
        <rdfs:label xml:lang="en">has characteristic</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000259 -->

    <ObjectProperty rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000259">
        <rdfs:label xml:lang="en">has parameter</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000056 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000056">
        <rdfs:label xml:lang="en">Smoluchowski equation based method</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000057 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000057">
        <rdfs:label xml:lang="en">Brownian diffusion Smoluchowski method</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000056"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000259"/>
                <onClass rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000257"/>
                <qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</qualifiedCardinality>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000259"/>
                <onClass rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000254"/>
                <qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</qualifiedCardinality>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000259"/>
                <onClass rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000258"/>
                <qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</qualifiedCardinality>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000259"/>
                <onClass rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000260"/>
                <qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</qualifiedCardinality>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000245"/>
                <someValuesFrom rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000102"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000245"/>
                <someValuesFrom rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000105"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000245"/>
                <someValuesFrom rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000108"/>
            </Restriction>
        </rdfs:subClassOf>
        <disjointWith rdf:resource="http://www.biomodels.net/kisao/KISAO#KISAO_0000058"/>
        <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://identifiers.org/pubmed/16204833</rdfs:seeAlso>
        <skos:definition xml:lang="en">In the Brownian diffusion Smoluchowski method, &#39;&#39;each molecule is treated as a point-like particle that diffuses freely in three-dimensional space. When a pair of reactive molecules collide, such as an enzyme and its substrate, a reaction occurs and the simulated reactants are replaced by products. [..] Analytic solutions are presented for some simulation parameters while others are calculated using look-up tables&#39;&#39;. Supported chemical processes include molecular diffusion, treatment of surfaces, zeroth-order-, unimolecular-, and bimolecular reactions.</skos:definition>
        <ns3:isImplementedIn xml:lang="en">Smoldyn</ns3:isImplementedIn>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000058 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000058">
        <rdfs:label xml:lang="en">Greens function reaction dynamics</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000102 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000102">
        <rdfs:label xml:lang="en">spatial description</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000105 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000105">
        <rdfs:label xml:lang="en">discrete variable</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000108 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000108">
        <rdfs:label xml:lang="en">progression with fixed time step</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000254 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000254">
        <rdfs:label xml:lang="en">Brownian diffusion accuracy</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000257 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000257">
        <rdfs:label xml:lang="en">surface-bound epsilon</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000258 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000258">
        <rdfs:label xml:lang="en">neighbour distance</rdfs:label>
    </Class>
    


    <!-- http://www.biomodels.net/kisao/KISAO#KISAO_0000260 -->

    <Class rdf:about="http://www.biomodels.net/kisao/KISAO#KISAO_0000260">
        <rdfs:label xml:lang="en">virtual box size</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



