has_specified_input has_specified_input gap penalty setting specification number of match regions setting specification fast pairwise alignment scoring method setting specification alignment window size setting specification alignment word size setting specification pairwise sequence alignment data transformation fast pairwise sequence alignment data transformation A pairwise sequence alignment data transformation that produces Fast/Approximate alignments using the method of Wilbur and Lipman (1983) and may be more suitable for sequences longer than 1000 residues. are local, fast and slow pairwise alignments disjoint ITPPR fast pairwise sequence alignment ClustalW Documentation Ready for OBI-WS : v1.0