analyze configuration command analyze configuration RECALCULATE command The analyze configuration RECALCULATE command is an analyze configuration command that runs all of the genomes loaded in the current batch through a test virtual CPU and records the measurements taken (fitness, gestation time, etc.). This command overrides any values that may have been loaded in with the genomes. The "use_resources" flags means whether or not the test virtual CPU will use resources when it runs. If the "use_random_inputs" flag is set, then digital organisms will be provided with new, random input 32-bit binary numbers for each trace as they would experience during an experiment performed using the standard mode of Avida. By default, the same inputs are provided every time to digital organisms in analyze mode. Phenotypic plasticity information is not available from the analyze configuration RECALCULATE command (you should use the analyze configuration RECALC command with "num_trials X", where X is greater than 1, for phenotypic plasticity statistics).