<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PBPKO?iri=http://purl.obolibrary.org/obo/OBI_0001940"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000039 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
        <rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000136 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
        <rdfs:label xml:lang="en">is about</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000312 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312">
        <rdfs:label xml:lang="en">is specified output of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000003 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003">
        <rdfs:label xml:lang="en">measurement unit label</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000032 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000032">
        <rdfs:label xml:lang="en">scalar measurement datum</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0001872 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001872">
        <rdfs:label xml:lang="en">sequence assembly process</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0001940 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001940">
        <rdfs:label xml:lang="en">N50</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000032"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SO_0001248"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000039"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000117 xml:lang="en">Alejandra Gonzalez-Beltran</ns3:IAO_0000117>
        <ns3:IAO_0000112 xml:lang="en">Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
PMID: 23587118. 

&quot;Here, the contig and scaffold N50 of the YH genome were ~20.9 kbp and ~22 Mbp&quot;</ns3:IAO_0000112>
        <ns3:IAO_0000111 xml:lang="en">N50</ns3:IAO_0000111>
        <ns3:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</ns3:IAO_0000117>
        <ns3:IAO_0000119 xml:lang="en">adapted from:
&quot;http://genome.cshlp.org/content/21/12/2224.full?sid=74019122-f944-4ccc-bffe-d16fdd0e7d6c&quot;
(from table 7)
and from &quot;http://www.nature.com/nrg/journal/v14/n3/full/nrg3367.html&quot;</ns3:IAO_0000119>
        <ns3:IAO_0000115 xml:lang="en">the weighted median item size or N50 is a weighted median of the lengths of items, equal to the length of the longest item i such that the sum of the lengths of items greater than or equal in length to i is greater than or equal to half the length of all of the items. With regard to assemblies the items are typically contigs or scaffolds. It therefore denotes the ability of the software to create contigs and provides information about the resulting sequence assembly</ns3:IAO_0000115>
        <ns3:IAO_0000118 xml:lang="en">weighted median item size</ns3:IAO_0000118>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/SO_0001248 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0001248">
        <rdfs:label>assembly</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000125 -->

    <Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000125">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
        <rdfs:label xml:lang="en">pending final vetting</rdfs:label>
    </Thing>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



