<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PBPKO?iri=http://purl.obolibrary.org/obo/OBI_0200022"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/OBI_0000417 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000417">
        <rdfs:label>achieves_planned_objective</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200022 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200022">
        <rdfs:label xml:lang="en">variance stabilizing transformation</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200169"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0200167"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000115 xml:lang="en">A variance stabilizing transformation is a data transformation, described in PMID 12169536, whose input is a matrix [y_ik] and whose output is a matrix obtained by applying formula (6) in this paper. One of the goals is to obtain an output matrix whose rows have equal variances. The method relies on various assumptions described in the paper.</ns3:IAO_0000115>
        <ns3:IAO_0000117 xml:lang="en">Elisabetta Manduchi</ns3:IAO_0000117>
        <ns3:IAO_0000117 xml:lang="en">James Malone</ns3:IAO_0000117>
        <ns3:IAO_0000117 xml:lang="en">Melanie Courtot</ns3:IAO_0000117>
        <ns3:IAO_0000119 xml:lang="en">PMID: 12169536</ns3:IAO_0000119>
        <ns3:IAO_0000112 xml:lang="en">This can be used for expression microarray assay normalization and it is referred to as &quot;variance stabilizing normalization&quot;, according to the procedure described e.g. in PMID 12169536.</ns3:IAO_0000112>
        <ns3:IAO_0000118 xml:lang="en">variance stabilising transformation</ns3:IAO_0000118>
        <ns3:IAO_0000111 xml:lang="en">variance stabilizing transformation</ns3:IAO_0000111>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200167 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200167">
        <rdfs:label xml:lang="en">data normalization objective</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200169 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200169">
        <rdfs:label xml:lang="en">normalization data transformation</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000122 -->

    <Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
        <rdfs:label xml:lang="en">ready for release</rdfs:label>
    </Thing>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



