<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/PCL_0113082"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:error="http://org.semanticweb.owlapi/error#"
     xmlns:CCN20230722="https://purl.brain-bican.org/taxonomy/CCN20230722/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000028"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010001"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010003"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015001 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015001">
        <rdfs:label>has exemplar data</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://org.semanticweb.owlapi/error#Error1 -->

    <Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
        <rdfs:label>cell</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/CL_0008060 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0008060">
        <rdfs:label>GABA-Glut neuron</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001"/>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0110767 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0110767">
        <rdfs:label>RHP-COA Ndnf Gaba_5 caudal ganglionic eminence derived cortical interneuron (Mmus)</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0113082 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0113082">
        <rdfs:label>RHP-COA Ndnf Gaba_5 Col6a3 caudal ganglionic eminence derived cortical interneuron (Mmus)</rdfs:label>
        <equivalentClass>
            <Class>
                <intersectionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                        <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_0702"/>
                    </Restriction>
                </intersectionOf>
            </Class>
        </equivalentClass>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0008060"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCL_0110767"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_0702"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000028>RHP-COA Ndnf Gaba_5 Col6a3 (Mmus)</ns3:IAO_0000028>
        <oboInOwl:hasExactSynonym>Krt73 (Mmus), Calca (Mmus), Myo5b (Mmus), Npas1 (Mmus) expressing caudal ganglionic eminence derived cortical interneuron of brain (Mus musculus)</oboInOwl:hasExactSynonym>
        <rdfs:comment>Warning: This type RHP-COA Ndnf Gaba_5 Col6a3 does not have cells in any of the regions it is named for retrohippocampal region (RHP), cortical amygdalar area (COA). The name merely indicates that it is a subtype of more general transcriptomic type that does. This assertion is based on data from registration to a reference standard common co-ordinate framework and parcelation scheme.</rdfs:comment>
        <rdfs:seeAlso>https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLAS_06.h5ad</rdfs:seeAlso>
        <ns3:IAO_0000115>A caudal ganglionic eminence derived cortical interneuron of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Krt73 (Mmus), Calca (Mmus), Myo5b (Mmus), Npas1 (Mmus). It is distinguished from other RHP-COA Ndnf Gaba_5 cells by expression of Col6a3. It is glutamatergic and GABAergic. These cells are located in the Hippocampal region, brain , in or close to the regions: Field CA1, stratum oriens, alveus, Field CA3, stratum oriens, Field CA3, stratum radiatum . Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Cluster:0702 RHP-COA Ndnf Gaba_5.</ns3:IAO_0000115>
        <rdfs:seeAlso>https://knowledge.brain-map.org/abcatlas#AQIBQVA4Sk5ONUxZQUJHVk1HS1kxQgACUTFOQ1dXUEc2RlowRE5JWEpCUQADBAFGUzAwRFhWMFQ5UjFYOUZKNFFFAAIAAAFRWTVTOEtNTzVITEpVRjBQMDBLAAIAAAExNUJLNDdEQ0lPRjFTTExVVzlQAAIAAAFDQkdDMFUzMFZWOUpQUjYwVEpVAAIBMDcwMiBSSFAtQ09BIE5kbmYgR2FiYV81AAAEAQECgazGjoGWFSADhGpN%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%2BAAAABAAACFZGT0ZZUEZRR1JLVURRVVozRkYACUxWREJKQVc4Qkk1WVNTMVFVQkcACgALAVRMT0tXQ0w5NVJVMDNEOVBFVEcAAjczR1ZURFhERUdFMjdNMlhKTVQAAwEEAQACIzAwMDAwMAADyAEABQEBAiMwMDAwMDAAA8gBAAAAAgMA</rdfs:seeAlso>
        <oboInOwl:hasExactSynonym>0702 RHP-COA Ndnf Gaba_5</oboInOwl:hasExactSynonym>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0123582"/>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0144302"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_1080"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_399"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_466"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_486"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_504"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_997"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0123582 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0123582">
        <rdfs:label>Krt73,Calca,Myo5b,Npas1 (Yao).</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0144302 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0144302">
        <rdfs:label>Col6a3 (Yao - within subclass).</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_0702 -->

    <NamedIndividual rdf:about="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_0702">
        <rdf:type rdf:resource="http://org.semanticweb.owlapi/error#Error1"/>
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>0702 RHP-COA Ndnf Gaba_5 CS20230722_CLUS_0702</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



