<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/PCL_0115333"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:error="http://org.semanticweb.owlapi/error#"
     xmlns:CCN20230722="https://purl.brain-bican.org/taxonomy/CCN20230722/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000028"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010001"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010003"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
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    <!-- http://purl.obolibrary.org/obo/RO_0015001 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015001">
        <rdfs:label>has exemplar data</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://org.semanticweb.owlapi/error#Error1 -->

    <Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
        <rdfs:label>cell</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000679 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000679">
        <rdfs:label>glutamatergic neuron</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001"/>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0111290 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0111290">
        <rdfs:label>SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 neuron (Mmus)</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0115333 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0115333">
        <rdfs:label>SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 Ctxn3 neuron (Mmus)</rdfs:label>
        <equivalentClass>
            <Class>
                <intersectionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                        <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_2953"/>
                    </Restriction>
                </intersectionOf>
            </Class>
        </equivalentClass>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000679"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCL_0111290"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_2953"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:comment>Warning: Despite its name, SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 Ctxn3 does not have cells in subparafascicular nucleus, magnocellular part (SPFm), subparafascicular nucleus, parvicellular part (SPFp), posterior limiting nucleus of the thalamus (POL), posterior intralaminar thalamic nucleus (PIL), posterior triangular thalamic nucleus (PoT). This assertion is based on data from registration to a reference standard common co-ordinate framework and parcelation scheme.</rdfs:comment>
        <ns3:IAO_0000115>A neuron of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Ctxn3 (Mmus), Gbx2 (Mmus), Otof (Mmus), Bcl11b (Mmus). It is distinguished from other SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 cells by expression of Ctxn3, Adgrg2. It is glutamatergic. These cells are located in the Thalamus , in or close to the regions: Precommissural nucleus, Xiphoid thalamic nucleus, Subparafascicular area . Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Cluster:2953 SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3.</ns3:IAO_0000115>
        <ns3:IAO_0000028>SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 Ctxn3 (Mmus)</ns3:IAO_0000028>
        <oboInOwl:hasExactSynonym>Ctxn3 (Mmus), Gbx2 (Mmus), Otof (Mmus), Bcl11b (Mmus) expressing neuron of brain (Mus musculus)</oboInOwl:hasExactSynonym>
        <rdfs:seeAlso>https://knowledge.brain-map.org/abcatlas#AQIBQVA4Sk5ONUxZQUJHVk1HS1kxQgACUTFOQ1dXUEc2RlowRE5JWEpCUQADBAFGUzAwRFhWMFQ5UjFYOUZKNFFFAAIAAAFRWTVTOEtNTzVITEpVRjBQMDBLAAIAAAExNUJLNDdEQ0lPRjFTTExVVzlQAAIAAAFDQkdDMFUzMFZWOUpQUjYwVEpVAAIBMjk1MyBTUEEtU1BGbS1TUEZwLVBPTC1QSUwtUG9UIFNwOSBHbHV0XzMAAAQBAQKBrMaOgZYVIAOEak39hFgYTQAFAAYBAQJDQkdDMFUzMFZWOUpQUjYwVEpVAAN%2BAAAABAAACEc0STRHRkpYSkI5QVRaM1BUWDEACUxWREJKQVc4Qkk1WVNTMVFVQkcACgALAW5vbmUAAm5vbmUAAwEEAQACIzAwMDAwMAADyAEABQEBAiMwMDAwMDAAA8gBAAAAAUs5Sk4yM1AyNEtRQ0dLOVU3NUEAAkhTWVpQWlcxNjY5VTgyMUJXWVAAAwQBRlMwMERYVjBUOVIxWDlGSjRRRQACAAABUVk1UzhLTU81SExKVUYwUDAwSwACAAABMTVCSzQ3RENJT0YxU0xMVVc5UAACAAABQ0JHQzBVMzBWVjlKUFI2MFRKVQACATI5NTMgU1BBLVNQRm0tU1BGcC1QT0wtUElMLVBvVCBTcDkgR2x1dF8zAAAEAQAChFC%2FH4OCCX8DhKAah4TEPdkEMk5RVElFN1RBTVA4UFFBSE80UAAFga%2BmSoHprA6BoIFHgJLV6AYABwAABQAGAQECQ0JHQzBVMzBWVjlKUFI2MFRKVQADfgAAAAQAAAhWRk9GWVBGUUdSS1VEUVVaM0ZGAAlMVkRCSkFXOEJJNVlTUzFRVUJHAAoACwFUTE9LV0NMOTVSVTAzRDlQRVRHAAI3M0dWVERYREVHRTI3TTJYSk1UAAMBBAEAAiMwMDAwMDAAA8gBAAUBAQIjMDAwMDAwAAPIAQAAAAIDAA%3D%3D</rdfs:seeAlso>
        <oboInOwl:hasExactSynonym>2953 SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3</oboInOwl:hasExactSynonym>
        <rdfs:seeAlso>https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLAS_19.h5ad</rdfs:seeAlso>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0125833"/>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0146553"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_50"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_549"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_560581559"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_609"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0125833 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0125833">
        <rdfs:label>Ctxn3,Gbx2,Otof,Bcl11b (Yao).</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0146553 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0146553">
        <rdfs:label>Ctxn3,Adgrg2 (Yao - within subclass).</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_2953 -->

    <NamedIndividual rdf:about="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_2953">
        <rdf:type rdf:resource="http://org.semanticweb.owlapi/error#Error1"/>
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>2953 SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut_3 CS20230722_CLUS_2953</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



