<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/PCL_0115835"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
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     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:error="http://org.semanticweb.owlapi/error#"
     xmlns:CCN20230722="https://purl.brain-bican.org/taxonomy/CCN20230722/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
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     -->

    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000028"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010001"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010003"/>
    


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    <!-- 
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    <!-- http://purl.obolibrary.org/obo/RO_0015001 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015001">
        <rdfs:label>has exemplar data</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
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     -->

    


    <!-- http://org.semanticweb.owlapi/error#Error1 -->

    <Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
        <rdfs:label>cell</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000617 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000617">
        <rdfs:label>GABAergic neuron</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001"/>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0111374 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0111374">
        <rdfs:label>PAG-PPN Pax5 Sox21 Gaba_3 neuron (Mmus)</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0115835 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0115835">
        <rdfs:label>PAG-PPN Pax5 Sox21 Gaba_3 Adgrg6 neuron (Mmus)</rdfs:label>
        <equivalentClass>
            <Class>
                <intersectionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                        <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3455"/>
                    </Restriction>
                </intersectionOf>
            </Class>
        </equivalentClass>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000617"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCL_0111374"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3455"/>
            </Restriction>
        </rdfs:subClassOf>
        <oboInOwl:hasExactSynonym>Otx1 (Mmus), Pax2 (Mmus), Adgrg6 (Mmus), Tacr1 (Mmus) expressing neuron of brain (Mus musculus)</oboInOwl:hasExactSynonym>
        <rdfs:seeAlso>https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLAS_20.h5ad</rdfs:seeAlso>
        <rdfs:comment>Warning: Despite its name, PAG-PPN Pax5 Sox21 Gaba_3 Adgrg6 does not have cells in periaqueductal gray (PAG). This assertion is based on data from registration to a reference standard common co-ordinate framework and parcelation scheme.</rdfs:comment>
        <oboInOwl:hasExactSynonym>3455 PAG-PPN Pax5 Sox21 Gaba_3</oboInOwl:hasExactSynonym>
        <ns3:IAO_0000028>PAG-PPN Pax5 Sox21 Gaba_3 Adgrg6 (Mmus)</ns3:IAO_0000028>
        <rdfs:seeAlso>https://knowledge.brain-map.org/abcatlas#AQIBQVA4Sk5ONUxZQUJHVk1HS1kxQgACUTFOQ1dXUEc2RlowRE5JWEpCUQADBAFGUzAwRFhWMFQ5UjFYOUZKNFFFAAIAAAFRWTVTOEtNTzVITEpVRjBQMDBLAAIAAAExNUJLNDdEQ0lPRjFTTExVVzlQAAIAAAFDQkdDMFUzMFZWOUpQUjYwVEpVAAIBMzQ1NSBQQUctUFBOIFBheDUgU294MjEgR2FiYV8zAAAEAQECgazGjoGWFSADhGpN%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%2BAAAABAAACFZGT0ZZUEZRR1JLVURRVVozRkYACUxWREJKQVc4Qkk1WVNTMVFVQkcACgALAVRMT0tXQ0w5NVJVMDNEOVBFVEcAAjczR1ZURFhERUdFMjdNMlhKTVQAAwEEAQACIzAwMDAwMAADyAEABQEBAiMwMDAwMDAAA8gBAAAAAgMA</rdfs:seeAlso>
        <ns3:IAO_0000115>A neuron of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Otx1 (Mmus), Pax2 (Mmus), Adgrg6 (Mmus), Tacr1 (Mmus). It is distinguished from other PAG-PPN Pax5 Sox21 Gaba_3 cells by expression of Adgrg6, Prkg1, Tacr1. It is GABAergic. These cells are located in the Midbrain , in or close to the regions: Pedunculopontine nucleus, Midbrain reticular nucleus . Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Cluster:3455 PAG-PPN Pax5 Sox21 Gaba_3.</ns3:IAO_0000115>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0126335"/>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0147055"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_1052"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_128"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_313"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0126335 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0126335">
        <rdfs:label>Otx1,Pax2,Adgrg6,Tacr1 (Yao).</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0147055 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0147055">
        <rdfs:label>Adgrg6,Prkg1,Tacr1 (Yao - within subclass).</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
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     -->

    


    <!-- https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3455 -->

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        <rdf:type rdf:resource="http://org.semanticweb.owlapi/error#Error1"/>
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>3455 PAG-PPN Pax5 Sox21 Gaba_3 CS20230722_CLUS_3455</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



