<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/PCL_0115911"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:error="http://org.semanticweb.owlapi/error#"
     xmlns:CCN20230722="https://purl.brain-bican.org/taxonomy/CCN20230722/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
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    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000028"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010001"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/CLM_0010003"/>
    


    <!-- 
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    //
    // Datatypes
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    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
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    <!-- http://purl.obolibrary.org/obo/RO_0015001 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015001">
        <rdfs:label>has exemplar data</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
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    <!-- http://org.semanticweb.owlapi/error#Error1 -->

    <Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000000 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000">
        <rdfs:label>cell</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/CL_0000617 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/CL_0000617">
        <rdfs:label>GABAergic neuron</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001"/>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0111387 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0111387">
        <rdfs:label>PAG-MRN-RN Foxa2 Gaba_4 neuron (Mmus)</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0115911 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0115911">
        <rdfs:label>PAG-MRN-RN Foxa2 Gaba_4 Hmcn2 neuron (Mmus)</rdfs:label>
        <equivalentClass>
            <Class>
                <intersectionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                        <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3531"/>
                    </Restriction>
                </intersectionOf>
            </Class>
        </equivalentClass>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000617"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCL_0111387"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015001"/>
                <hasValue rdf:resource="https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3531"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:comment>Warning: Despite its name, PAG-MRN-RN Foxa2 Gaba_4 Hmcn2 does not have cells in midbrain reticular nucleus (MRN), red nucleus (RN). This assertion is based on data from registration to a reference standard common co-ordinate framework and parcelation scheme.</rdfs:comment>
        <rdfs:seeAlso>https://knowledge.brain-map.org/abcatlas#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%2BDggl%2FA4SgGoeExD3ZBDJOUVRJRTdUQU1QOFBRQUhPNFAABYGvpkqB6awOgaCBR4CS1egGAAcAAAUABgEBAkNCR0MwVTMwVlY5SlBSNjBUSlUAA34AAAAEAAAIVkZPRllQRlFHUktVRFFVWjNGRgAJTFZEQkpBVzhCSTVZU1MxUVVCRwAKAAsBVExPS1dDTDk1UlUwM0Q5UEVURwACNzNHVlREWERFR0UyN00yWEpNVAADAQQBAAIjMDAwMDAwAAPIAQAFAQECIzAwMDAwMAADyAEAAAACAwA%3D</rdfs:seeAlso>
        <oboInOwl:hasExactSynonym>3531 PAG-MRN-RN Foxa2 Gaba_4</oboInOwl:hasExactSynonym>
        <ns3:IAO_0000028>PAG-MRN-RN Foxa2 Gaba_4 Hmcn2 (Mmus)</ns3:IAO_0000028>
        <oboInOwl:hasExactSynonym>Tmem114 (Mmus), Otx2os1 (Mmus), Col23a1 (Mmus) expressing neuron of brain (Mus musculus)</oboInOwl:hasExactSynonym>
        <rdfs:seeAlso>https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLAS_20.h5ad</rdfs:seeAlso>
        <ns3:IAO_0000115>A neuron of the Mus musculus brain. It is distinguished from other cells in the brain by selective expression of Tmem114 (Mmus), Otx2os1 (Mmus), Col23a1 (Mmus). It is distinguished from other PAG-MRN-RN Foxa2 Gaba_4 cells by expression of Hmcn2. It is GABAergic. These cells are located in the Midbrain , in or close to the regions: Periaqueductal gray . Reference transcriptomic data for this type can be found in the dataset/taxonomy - Yao et al. (2023), Whole Mouse Brain in cell set Cluster:3531 PAG-MRN-RN Foxa2 Gaba_4.</ns3:IAO_0000115>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0126411"/>
        <ns3:CLM_0010003 rdf:resource="http://purl.obolibrary.org/obo/PCL_0147131"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_313"/>
        <ns3:CLM_0010001 rdf:resource="https://purl.brain-bican.org/ontology/mbao/MBA_795"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0126411 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0126411">
        <rdfs:label>Tmem114,Otx2os1,Col23a1 (Yao).</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0147131 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0147131">
        <rdfs:label>Hmcn2 (Yao - within subclass).</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
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     -->

    


    <!-- https://purl.brain-bican.org/taxonomy/CCN20230722/CS20230722_CLUS_3531 -->

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        <rdf:type rdf:resource="http://org.semanticweb.owlapi/error#Error1"/>
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>3531 PAG-MRN-RN Foxa2 Gaba_4 CS20230722_CLUS_3531</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



