<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/pcl/CS201912131_132"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:ns5="http://purl.obolibrary.org/obo/"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:pcl="http://purl.obolibrary.org/obo/pcl/"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://n2o.neo/custom/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051"/>
    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/original_label"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_aligned_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015002 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
        <rdfs:label>exemplar data of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001">
        <rdfs:label>Cluster</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0015132 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0015132">
        <rdfs:label>(Mouse Pvalb)-like primary motor cortex GABAergic interneuron (Hsap)</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_132 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_132">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdf:type>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCL_0015132"/>
            </Restriction>
        </rdf:type>
        <rdfs:label>RNAseq 059-072 - CS201912131_132</rdfs:label>
        <rdfs:comment>Pvalb is: MGE-derived GABAergic subclass typically expressing Pvalb; includes basket and chandelier cells. In Human primary motor cortex (CCN201912131), Pvalb has 14 child types: Inh L5-6 PVALB KCNIP2, Inh L5-6 PVALB ZFPM2-AS1, Inh L3-5 PVALB ISG20, Inh L5 PVALB LRIG3, Inh L2-5 PVALB HHIPL1, Inh L2-5 PVALB RPH3AL, Inh L3 PVALB SAMD13, Inh L1-2 PVALB CDK20, Inh L2 PVALB FRZB, Inh L1-2 SST CLIC6, Inh L5-6 PVALB GAPDHP60, Inh L5-6 PVALB FAM150B, Inh L5-6 PVALB MEPE and Inh L1-6 PVALB COL15A1. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is ADAMTS17 and LOC101929680 (F-beta = 0.88), based on the NS Forest method of marker gene selection. Pvalb cells represent 34.38% of all GABAergic cells collected in the Human M1 10Xv3 dataset. Pvalb cells have an average of 5517 genes detected, which is 839 more than the average for all GABAergic cells (4678).</rdfs:comment>
        <ns5:PCL_0010051>Subclass</ns5:PCL_0010051>
        <oboInOwl:hasExactSynonym>Pvalb</oboInOwl:hasExactSynonym>
        <ns4:node_metadata>{&quot;cell_set_preferred_alias&quot;: &quot;(Mouse Pvalb)-like&quot;, &quot;cell_set_label&quot;: &quot;RNAseq 059-072&quot;, &quot;cell_set_accession&quot;: &quot;CS201912131_132&quot;, &quot;cell_set_aligned_alias&quot;: &quot;Pvalb&quot;, &quot;cell_set_additional_aliases&quot;: &quot;&quot;, &quot;cell_set_alias_assignee&quot;: &quot;Nikolas Jorstad&quot;, &quot;cell_set_alias_citation&quot;: &quot;PMID:34616062&quot;, &quot;cell_set_structure&quot;: &quot;primary motor cortex&quot;, &quot;cell_set_ontology_tag&quot;: &quot;UBERON:0001384&quot;, &quot;species&quot;: &quot;Human&quot;, &quot;modality&quot;: &quot;RNAseq&quot;, &quot;taxonomy_id&quot;: &quot;CCN201912131&quot;, &quot;taxonomy_description&quot;: &quot;Human M1 transcriptomics taxonomy&quot;, &quot;child_cell_set_accessions&quot;: &quot;CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72&quot;, &quot;cell_type_card&quot;: &quot;Subclass&quot;, &quot;original_label&quot;: &quot;n63&quot;, &quot;cell_set_color&quot;: &quot;#D93137&quot;}</ns4:node_metadata>
        <ns4:cell_set_preferred_alias>(Mouse Pvalb)-like</ns4:cell_set_preferred_alias>
        <oboInOwl:hasRelatedSynonym>Pvalb</oboInOwl:hasRelatedSynonym>
        <ns4:cell_set_alias_assignee>Nikolas Jorstad</ns4:cell_set_alias_assignee>
        <ns4:cell_set_label>RNAseq 059-072</ns4:cell_set_label>
        <skos:prefLabel>(Mouse Pvalb)-like</skos:prefLabel>
        <ns5:PCL_0010059>CS201912131_132</ns5:PCL_0010059>
        <ns4:cell_set_aligned_alias>Pvalb</ns4:cell_set_aligned_alias>
        <ns4:original_label>n63</ns4:original_label>
        <ns4:cell_set_alias_citation>PMID:34616062</ns4:cell_set_alias_citation>
        <ns5:RO_0015003 rdf:resource="http://purl.obolibrary.org/obo/pcl/CS201912131_215"/>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_215 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_215">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>RNAseq 041-072 - CS201912131_215</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



