<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/pcl/CS201912131_134"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:ns5="http://purl.obolibrary.org/obo/"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:pcl="http://purl.obolibrary.org/obo/pcl/"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://n2o.neo/custom/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051"/>
    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_aligned_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015002 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
        <rdfs:label>exemplar data of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001">
        <rdfs:label>Cluster</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0015134 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0015134">
        <rdfs:label>(Mouse L5 IT)-like primary motor cortex glutamatergic neuron (Hsap)</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_134 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_134">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdf:type>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCL_0015134"/>
            </Restriction>
        </rdf:type>
        <rdfs:label>RNAseq 081-092 - CS201912131_134</rdfs:label>
        <ns5:PCL_0010059>CS201912131_134</ns5:PCL_0010059>
        <ns4:cell_set_label>RNAseq 081-092</ns4:cell_set_label>
        <rdfs:comment>L5 IT is: Layer 5 intratelencephalic-projecting. In Human primary motor cortex (CCN201912131), L5 IT has 12 child types: Exc L3 THEMIS ENPEP, Exc L3-5 RORB TNNT2, Exc L3-5 RORB LAMA4, Exc L5 THEMIS VILL, Exc L3 RORB OTOGL, Exc L3-5 RORB LINC01202, Exc L5 THEMIS SLC22A18, Exc L5-6 THEMIS TNFAIP6, Exc L3-5 RORB LNX2, Exc L3-5 RORB RPRM, Exc L5 RORB MED8 and Exc L5 THEMIS FGF10. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is LOC105374971 and RORB (F-beta = 0.825), based on the NS Forest method of marker gene selection. L5 IT cells represent 28.57% of all Glutamatergic cells collected in the Human M1 10Xv3 dataset. L5 IT cells have an average of 6331 genes detected, which is 189 more than the average for all Glutamatergic cells (6142).</rdfs:comment>
        <ns4:cell_set_alias_citation>PMID:34616062</ns4:cell_set_alias_citation>
        <ns5:PCL_0010051>Subclass</ns5:PCL_0010051>
        <ns4:cell_set_preferred_alias>(Mouse L5 IT)-like</ns4:cell_set_preferred_alias>
        <ns4:node_metadata>{&quot;cell_set_preferred_alias&quot;: &quot;(Mouse L5 IT)-like&quot;, &quot;cell_set_label&quot;: &quot;RNAseq 081-092&quot;, &quot;cell_set_accession&quot;: &quot;CS201912131_134&quot;, &quot;cell_set_aligned_alias&quot;: &quot;L5 IT&quot;, &quot;cell_set_additional_aliases&quot;: &quot;&quot;, &quot;cell_set_alias_assignee&quot;: &quot;Nikolas Jorstad&quot;, &quot;cell_set_alias_citation&quot;: &quot;PMID:34616062&quot;, &quot;cell_set_structure&quot;: &quot;primary motor cortex&quot;, &quot;cell_set_ontology_tag&quot;: &quot;UBERON:0001384&quot;, &quot;species&quot;: &quot;Human&quot;, &quot;modality&quot;: &quot;RNAseq&quot;, &quot;taxonomy_id&quot;: &quot;CCN201912131&quot;, &quot;taxonomy_description&quot;: &quot;Human M1 transcriptomics taxonomy&quot;, &quot;child_cell_set_accessions&quot;: &quot;CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93&quot;, &quot;cell_type_card&quot;: &quot;Subclass&quot;, &quot;original_label&quot;: &quot;&quot;, &quot;cell_set_color&quot;: &quot;#50B2AD&quot;}</ns4:node_metadata>
        <oboInOwl:hasExactSynonym>L5 IT</oboInOwl:hasExactSynonym>
        <oboInOwl:hasRelatedSynonym>L5 IT</oboInOwl:hasRelatedSynonym>
        <skos:prefLabel>(Mouse L5 IT)-like</skos:prefLabel>
        <ns4:cell_set_aligned_alias>L5 IT</ns4:cell_set_aligned_alias>
        <ns4:cell_set_alias_assignee>Nikolas Jorstad</ns4:cell_set_alias_assignee>
        <ns5:RO_0015003 rdf:resource="http://purl.obolibrary.org/obo/pcl/CS201912131_248"/>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_248 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_248">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>RNAseq 079-092 - CS201912131_248</rdfs:label>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



