<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/pcl/CS201912131_97"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:ns5="http://purl.obolibrary.org/obo/"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:pcl="http://purl.obolibrary.org/obo/pcl/"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:error="http://org.semanticweb.owlapi/error#"
     xmlns:ns4="http://n2o.neo/custom/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051"/>
    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/original_label"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_aligned_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_additional_aliases"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015002 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
        <rdfs:label>exemplar data of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://org.semanticweb.owlapi/error#Error1 -->

    <Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001">
        <rdfs:label>Cluster</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0015097 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0015097">
        <rdfs:label>Exc L5-6 THEMIS SMYD1 primary motor cortex glutamatergic neuron (Hsap)</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_145 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_145">
        <rdf:type rdf:resource="http://org.semanticweb.owlapi/error#Error1"/>
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>RNAseq 073-096 - CS201912131_145</rdfs:label>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912131_97 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912131_97">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdf:type>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCL_0015097"/>
            </Restriction>
        </rdf:type>
        <rdfs:label>RNAseq 096 - CS201912131_97</rdfs:label>
        <skos:prefLabel>Exc L5-6 THEMIS SMYD1</skos:prefLabel>
        <ns4:node_metadata>{&quot;cell_set_preferred_alias&quot;: &quot;Exc L5-6 THEMIS SMYD1&quot;, &quot;cell_set_label&quot;: &quot;RNAseq 096&quot;, &quot;cell_set_accession&quot;: &quot;CS201912131_97&quot;, &quot;cell_set_aligned_alias&quot;: &quot;L6 IT Car3&quot;, &quot;cell_set_additional_aliases&quot;: &quot;L6 IT_3&quot;, &quot;cell_set_alias_assignee&quot;: &quot;Nikolas Jorstad&quot;, &quot;cell_set_alias_citation&quot;: &quot;PMID:34616062&quot;, &quot;cell_set_structure&quot;: &quot;primary motor cortex&quot;, &quot;cell_set_ontology_tag&quot;: &quot;UBERON:0001384&quot;, &quot;species&quot;: &quot;Human&quot;, &quot;modality&quot;: &quot;RNAseq&quot;, &quot;taxonomy_id&quot;: &quot;CCN201912131&quot;, &quot;taxonomy_description&quot;: &quot;Human M1 transcriptomics taxonomy&quot;, &quot;child_cell_set_accessions&quot;: &quot;&quot;, &quot;cell_type_card&quot;: &quot;Cell Type,Subclass&quot;, &quot;original_label&quot;: &quot;Exc L5-6 THEMIS SMYD1&quot;, &quot;cell_set_color&quot;: &quot;#5100FF&quot;}</ns4:node_metadata>
        <ns5:PCL_0010051>Cell Type</ns5:PCL_0010051>
        <ns4:cell_set_alias_assignee>Nikolas Jorstad</ns4:cell_set_alias_assignee>
        <oboInOwl:hasExactSynonym>L6 IT_3</oboInOwl:hasExactSynonym>
        <ns4:cell_set_preferred_alias>Exc L5-6 THEMIS SMYD1</ns4:cell_set_preferred_alias>
        <rdfs:comment>L6 IT Car3 is: Layer 6 intratelencephalic-projecting, Car3-expressing. In Human primary motor cortex (CCN201912131), L6 IT Car3 has 1 child type: Exc L5-6 THEMIS SMYD1. L6 IT Car3 includes the Patch-seq and connectivity types L6 IT_3. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is ATP10A and RGS12 (F-beta = 0.816), based on the NS Forest method of marker gene selection. L6 IT Car3 cells represent 0.68% of all Glutamatergic cells collected in the Human M1 10Xv3 dataset. L6 IT Car3 cells have an average of 6461 genes detected, which is 319 more than the average for all Glutamatergic cells (6142).</rdfs:comment>
        <oboInOwl:hasRelatedSynonym>L6 IT Car3</oboInOwl:hasRelatedSynonym>
        <ns4:cell_set_alias_citation>PMID:34616062</ns4:cell_set_alias_citation>
        <ns5:PCL_0010051>Subclass</ns5:PCL_0010051>
        <ns4:cell_set_additional_aliases>L6 IT_3</ns4:cell_set_additional_aliases>
        <oboInOwl:hasExactSynonym>L6 IT Car3</oboInOwl:hasExactSynonym>
        <ns4:cell_set_label>RNAseq 096</ns4:cell_set_label>
        <ns4:cell_set_aligned_alias>L6 IT Car3</ns4:cell_set_aligned_alias>
        <ns5:PCL_0010059>CS201912131_97</ns5:PCL_0010059>
        <ns4:original_label>Exc L5-6 THEMIS SMYD1</ns4:original_label>
        <ns5:RO_0015003 rdf:resource="http://purl.obolibrary.org/obo/pcl/CS201912131_145"/>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



