<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/pcl/CS201912132_96"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:ns5="http://purl.obolibrary.org/obo/"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:pcl="http://purl.obolibrary.org/obo/pcl/"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://n2o.neo/custom/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051"/>
    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_aligned_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015002 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
        <rdfs:label>exemplar data of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001">
        <rdfs:label>Cluster</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0019096 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0019096">
        <rdfs:label>(Mouse Sncg)-like primary motor cortex GABAergic interneuron (Cjac)</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912132_148 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912132_148">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>RNAseq 07-15 - CS201912132_148</rdfs:label>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/pcl/CS201912132_96 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS201912132_96">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdf:type>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCL_0019096"/>
            </Restriction>
        </rdf:type>
        <rdfs:label>RNAseq 08-14 - CS201912132_96</rdfs:label>
        <ns4:node_metadata>{&quot;cell_set_preferred_alias&quot;: &quot;(Mouse Sncg)-like&quot;, &quot;cell_set_label&quot;: &quot;RNAseq 08-14&quot;, &quot;cell_set_accession&quot;: &quot;CS201912132_96&quot;, &quot;cell_set_aligned_alias&quot;: &quot;Sncg&quot;, &quot;cell_set_additional_aliases&quot;: &quot;&quot;, &quot;cell_set_alias_assignee&quot;: &quot;Fenna Krienen&quot;, &quot;cell_set_alias_citation&quot;: &quot;PMID:34616062&quot;, &quot;cell_set_structure&quot;: &quot;primary motor cortex&quot;, &quot;cell_set_ontology_tag&quot;: &quot;UBERON:0001384&quot;, &quot;species&quot;: &quot;Marmoset&quot;, &quot;modality&quot;: &quot;RNAseq&quot;, &quot;taxonomy_id&quot;: &quot;CCN201912132&quot;, &quot;taxonomy_description&quot;: &quot;Marmoset M1 taxonomy using 10X data&quot;, &quot;child_cell_set_accessions&quot;: &quot;CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14&quot;, &quot;cell_type_card&quot;: &quot;Subclass&quot;, &quot;original_label&quot;: &quot;&quot;, &quot;cell_set_color&quot;: &quot;#D633FF&quot;}</ns4:node_metadata>
        <rdfs:comment>Sncg is: CGE/PoA-derived GABAergic subclass typically expressing Sncg in mouse. In Marmoset primary motor cortex (CCN201912132), Sncg has 7 child types: Inh SNCG PLPPR1, Inh PAX6 ANKRD6, Inh VIP CYP19A1, Inh SNCG CNTN4, Inh PAX6 CDH4, Inh GAD1 PCP4 and Inh GAD1 LOC108589948. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is ADARB2 and CNR1 and LUZP2 (F-beta = 0.655), based on the NS Forest method of marker gene selection. Sncg cells represent 0.0877674163466813% of all GABAergic cells collected in the marmoset M1 10Xv3 dataset. Sncg cells have an average of 3330 genes detected, which is 222 less than the average for all GABAergic cells (3552).</rdfs:comment>
        <ns4:cell_set_alias_assignee>Fenna Krienen</ns4:cell_set_alias_assignee>
        <oboInOwl:hasRelatedSynonym>Sncg</oboInOwl:hasRelatedSynonym>
        <ns4:cell_set_preferred_alias>(Mouse Sncg)-like</ns4:cell_set_preferred_alias>
        <ns5:PCL_0010051>Subclass</ns5:PCL_0010051>
        <ns4:cell_set_alias_citation>PMID:34616062</ns4:cell_set_alias_citation>
        <oboInOwl:hasExactSynonym>Sncg</oboInOwl:hasExactSynonym>
        <ns4:cell_set_label>RNAseq 08-14</ns4:cell_set_label>
        <skos:prefLabel>(Mouse Sncg)-like</skos:prefLabel>
        <ns5:PCL_0010059>CS201912132_96</ns5:PCL_0010059>
        <ns4:cell_set_aligned_alias>Sncg</ns4:cell_set_aligned_alias>
        <ns5:RO_0015003 rdf:resource="http://purl.obolibrary.org/obo/pcl/CS201912132_148"/>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



