exemplar data of Cluster Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mmus) RNAseq 002-004 - CS202002013_127 RNAseq 002 - CS202002013_2 Alpha7 cell Lamp5 Egln3_1 CS202002013_2 Sncg_4 {"cell_set_preferred_alias": "Lamp5-like Egln3_1", "original_label": "Lamp5 Egln3_1", "cell_set_label": "RNAseq 002", "cell_set_accession": "CS202002013_2", "cell_set_aligned_alias": "Sncg_4", "cell_set_additional_aliases": "Alpha7 cell", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066|PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#FF88AD"} Lamp5-like Egln3_1 PMID:33184512 PMID:34616066 PMID:34616062 Sncg_4 In Mouse primary motor cortex (CCN202002013), Lamp5 Egln3_1 is a member of the Lamp5 subclass. Lamp5 Egln3_1 includes the Patch-seq and connectivity types Sncg_4|Alpha7 cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Chrna7 and Fam19a1 and Fbn2 (F-beta = 0.691), based on the NS Forest method of marker gene selection. Lamp5 Egln3_1 cells represent 4.29% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Egln3_1 cells have an average of 4654 genes detected, which is 26 more than the average for all Lamp5 cells (4628). Lamp5 Egln3_1 cells have an average firing rate of 35.17 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 304.55 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.47 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Egln3_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.07 vs. 0.2 average for all Lamp5 cells), axon total length (11473 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2291.86 vs. 2247.19 microns for all Lamp5 cells), and stems (5 vs. 7.47 for all Lamp5 cells). RNAseq 002 Cell Type Zizhen Yao Sncg_4 Alpha7 cell Alpha7 cell Lamp5-like Egln3_1 Federico Scala Nikolas Jorstad