exemplar data of Cluster L5/6 NP primary motor cortex glutamatergic neuron (Mmus) RNAseq 086-088 - CS202002013_207 RNAseq 086-088 PMID:34616066 {"cell_set_preferred_alias": "L5/6 NP", "original_label": "n91", "cell_set_label": "RNAseq 086-088", "cell_set_accession": "CS202002013_207", "cell_set_aligned_alias": "L5/6 NP", "cell_set_additional_aliases": "L5/6 NP|Near-projecting", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_86|CS202002013_87|CS202002013_88", "cell_type_card": "Subclass", "cell_set_color": "#3E9E64"} PMID:33184512 L5/6 NP n91 Zizhen Yao L5/6 NP L5/6 NP Near-projecting Nikolas Jorstad Near-projecting CS202002013_207 L5/6 NP Federico Scala L5/6 NP Subclass L5/6 NP PMID:34616062 L5/6 NP is: Layer 5/6 near-projecting. In Mouse primary motor cortex (CCN202002013), L5/6 NP has 3 child types: L5/6 NP_1, L5/6 NP_2 and L5/6 NP_3. L5/6 NP includes the Patch-seq and connectivity types L5/6 NP|Near-projecting. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Etv1 and Tshz2 (F-beta = 0.858), based on the NS Forest method of marker gene selection. L5/6 NP cells represent 4.13% of all Glutamatergic cells collected in the snRNA-seq 10X v3 B dataset. L5/6 NP cells have an average of 4338 genes detected, which is 775 less than the average for all Glutamatergic cells (5113). The average normalized cortical depth of L5/6 NP cells is 0.651, compared to an average of 0.527 for all Glutamatergic cells. L5/6 NP cells have an average firing rate of 50.83 Hz, compared to 26.59 Hz for all Glutamatergic cells recorded. Other distinguishing features include an input resistance of 339.81 MOhms (156.52 MOhms in all Glutamatergic cells), and upstroke:downstroke ratio of 3.42 (4.03 for all Glutamatergic cells). The most distinguishing morpholgical features of L5/6 NP, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.55 vs. 0.54 average for all Glutamatergic cells), Glutamatergic cells), dendrite total length (2768.42 vs. 4488.4 microns for all Glutamatergic cells), and stems (4.5 vs. 7.25 for all Glutamatergic cells). Near-projecting RNAseq 070-088 - CS202002013_234