exemplar data of Cluster Lamp5 Egln3_2 primary motor cortex GABAergic interneuron (Mmus) RNAseq 003-004 - CS202002013_128 RNAseq 003 - CS202002013_3 Lamp5 Egln3_2 Canopy cell Cell Type {"cell_set_preferred_alias": "Lamp5 Egln3_2", "original_label": "Lamp5 Egln3_2", "cell_set_label": "RNAseq 003", "cell_set_accession": "CS202002013_3", "cell_set_aligned_alias": "", "cell_set_additional_aliases": "Canopy cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala|Zizhen Yao", "cell_set_alias_citation": "PMID:34616066|PMID:33184512|PMID:34616066", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#DD8091"} Canopy cell Canopy cell Lamp5 Egln3_2 PMID:34616066 Lamp5 Egln3_2 Federico Scala PMID:33184512 In Mouse primary motor cortex (CCN202002013), Lamp5 Egln3_2 is a member of the Lamp5 subclass. Lamp5 Egln3_2 includes the Patch-seq and connectivity types Canopy cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Crim1 and Zfp804b (F-beta = 0.607), based on the NS Forest method of marker gene selection. Lamp5 Egln3_2 cells represent 5.65% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Egln3_2 cells have an average of 4398 genes detected, which is 230 less than the average for all Lamp5 cells (4628). Lamp5 Egln3_2 cells have an average firing rate of 31.5 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 246.62 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.38 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Egln3_2, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.05 vs. 0.2 average for all Lamp5 cells), axon total length (9074.27 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (2265.68 vs. 2247.19 microns for all Lamp5 cells), and stems (5.75 vs. 7.47 for all Lamp5 cells). RNAseq 003 Zizhen Yao Lamp5-like_C5 CS202002013_3