exemplar data of Cluster Lamp5 Lhx6 primary motor cortex GABAergic interneuron (Mmus) RNAseq 005-008 - CS202002013_129 RNAseq 008 - CS202002013_8 Cell Type Nikolas Jorstad Lamp5 Lhx6 In Mouse primary motor cortex (CCN202002013), Lamp5 Lhx6 is a member of the Lamp5 subclass. Lamp5 Lhx6 includes the Patch-seq and connectivity types Lamp5_3|L5/6 neurogliaform cell. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Gm45680 and Nos1 (F-beta = 0.694), based on the NS Forest method of marker gene selection. Lamp5 Lhx6 cells represent 4.4% of all Lamp5 cells collected in the snRNA-seq 10X v3 B dataset. Lamp5 Lhx6 cells have an average of 4881 genes detected, which is 253 more than the average for all Lamp5 cells (4628). Lamp5 Lhx6 cells have an average firing rate of 45.83 Hz, compared to 40.62 Hz for all Lamp5 cells recorded. Other distinguishing features include an input resistance of 268.88 MOhms (240.82 MOhms in all Lamp5 cells), and upstroke:downstroke ratio of 2.46 (3.13 for all Lamp5 cells). The most distinguishing morpholgical features of Lamp5 Lhx6, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.81 vs. 0.2 average for all Lamp5 cells), axon total length (20623.17 vs. 10733.35 microns for all Lamp5 cells), dendrite total length (1352.27 vs. 2247.19 microns for all Lamp5 cells), and stems (6 vs. 7.47 for all Lamp5 cells). Lamp5 Lhx6 L5/6 neurogliaform cell Federico Scala PMID:33184512 Lamp5_3 {"cell_set_preferred_alias": "Lamp5 Lhx6", "original_label": "Lamp5 Lhx6", "cell_set_label": "RNAseq 008", "cell_set_accession": "CS202002013_8", "cell_set_aligned_alias": "Lamp5 Lhx6", "cell_set_additional_aliases": "Lamp5_3|L5/6 neurogliaform cell", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "PMID:34616066||PMID:34616062|PMID:33184512", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", "species": "Mouse", "modality": "RNAseq", "taxonomy_id": "CCN202002013", "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", "cell_type_card": "Cell Type", "cell_set_color": "#C77963"} CS202002013_8 Zizhen Yao L5/6 neurogliaform cell Lamp5 Lhx6 Lamp5 Lhx6 Lamp5_3 L5/6 neurogliaform cell Lamp5 Lhx6 RNAseq 008 PMID:34616066 Lamp5_3 PMID:34616062