<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PCL?iri=http://purl.obolibrary.org/obo/pcl/CS202002013_82"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:pcl="http://purl.obolibrary.org/obo/pcl/"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:obo="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://n2o.neo/custom/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051"/>
    <AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/original_label"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
    <AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/RO_0015002 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
        <rdfs:label>exemplar data of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/PCL_0010001 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0010001">
        <rdfs:label>Cluster</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/PCL_0011082 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/PCL_0011082">
        <rdfs:label>L6b Shisa6_1 primary motor cortex glutamatergic neuron (Mmus)</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/pcl/CS202002013_206 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS202002013_206">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdfs:label>RNAseq 082-083 - CS202002013_206</rdfs:label>
    </NamedIndividual>
    


    <!-- http://purl.obolibrary.org/obo/pcl/CS202002013_82 -->

    <NamedIndividual rdf:about="http://purl.obolibrary.org/obo/pcl/CS202002013_82">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCL_0010001"/>
        <rdf:type>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCL_0011082"/>
            </Restriction>
        </rdf:type>
        <rdfs:label>RNAseq 082 - CS202002013_82</rdfs:label>
        <ns3:cell_set_alias_citation>PMID:34616066</ns3:cell_set_alias_citation>
        <ns3:cell_set_preferred_alias>L6b Shisa6_1</ns3:cell_set_preferred_alias>
        <ns3:original_label>L6b Shisa6_1</ns3:original_label>
        <obo:PCL_0010059>CS202002013_82</obo:PCL_0010059>
        <obo:PCL_0010051>Cell Type</obo:PCL_0010051>
        <ns3:cell_set_label>RNAseq 082</ns3:cell_set_label>
        <ns3:node_metadata>{&quot;cell_set_preferred_alias&quot;: &quot;L6b Shisa6_1&quot;, &quot;original_label&quot;: &quot;L6b Shisa6_1&quot;, &quot;cell_set_label&quot;: &quot;RNAseq 082&quot;, &quot;cell_set_accession&quot;: &quot;CS202002013_82&quot;, &quot;cell_set_aligned_alias&quot;: &quot;&quot;, &quot;cell_set_additional_aliases&quot;: &quot;&quot;, &quot;cell_set_alias_assignee&quot;: &quot;Zizhen Yao&quot;, &quot;cell_set_alias_citation&quot;: &quot;PMID:34616066&quot;, &quot;cell_set_structure&quot;: &quot;primary motor cortex&quot;, &quot;cell_set_ontology_tag&quot;: &quot;UBERON:0001384&quot;, &quot;species&quot;: &quot;Mouse&quot;, &quot;modality&quot;: &quot;RNAseq&quot;, &quot;taxonomy_id&quot;: &quot;CCN202002013&quot;, &quot;taxonomy_description&quot;: &quot;Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets &quot;, &quot;child_cell_set_accessions&quot;: &quot;&quot;, &quot;cell_type_card&quot;: &quot;Cell Type&quot;, &quot;cell_set_color&quot;: &quot;#46306A&quot;}</ns3:node_metadata>
        <skos:prefLabel>L6b Shisa6_1</skos:prefLabel>
        <rdfs:comment>In Mouse primary motor cortex (CCN202002013), L6b Shisa6_1 is a member of the L6b subclass. The minimal set of markers required to distinguish this cell type from other cell types in the primary motor cortex is Cplx3 and Ly6g6e and Svil (F-beta = 0.429), based on the NS Forest method of marker gene selection. L6b Shisa6_1 cells represent 14.85% of all L6b cells collected in the snRNA-seq 10X v3 B dataset. L6b Shisa6_1 cells have an average of 5657 genes detected, which is 175 more than the average for all L6b cells (5482). L6b Shisa6_1 cells have an average firing rate of 25.83 Hz, compared to 28.79 Hz for all L6b cells recorded. Other distinguishing features include an input resistance of 271.96 MOhms (299.53 MOhms in all L6b cells), and upstroke:downstroke ratio of 4.84 (4.57 for all L6b cells). The most distinguishing morpholgical features of L6b Shisa6_1, as determined by reconstructions from Patch-seq data, are normalized cortical depth (0.89 vs. 0.89 average for all L6b cells),  dendrite total length (2730.57 vs. 2881.17 microns for all L6b cells), and stems (6.67 vs. 5.67 for all L6b cells).</rdfs:comment>
        <ns3:cell_set_alias_assignee>Zizhen Yao</ns3:cell_set_alias_assignee>
        <obo:RO_0015003 rdf:resource="http://purl.obolibrary.org/obo/pcl/CS202002013_206"/>
    </NamedIndividual>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



