<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PSDO?iri=http://purl.obolibrary.org/obo/STATO_0000081"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000391"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000041"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/OBI_0000293 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293">
        <rdfs:label xml:lang="en">has_specified_input</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000299 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299">
        <rdfs:label xml:lang="en">has_specified_output</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0000417 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000417">
        <rdfs:label>achieves_planned_objective</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200200 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200200">
        <rdfs:label xml:lang="en">chi square test</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000027 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000027">
        <rdfs:label xml:lang="en">test of association between categorical variables</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000053 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000053">
        <rdfs:label xml:lang="en">false positive rate</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000069 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000069">
        <rdfs:label xml:lang="en">number of degrees of freedom</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000081 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000081">
        <rdfs:label xml:lang="en">Pearson&#39;s Chi square test of independence between categorical variables</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200200"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/STATO_0000027"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000069"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000140"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000053"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <onClass rdf:resource="http://purl.obolibrary.org/obo/STATO_0000252"/>
                <qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</qualifiedCardinality>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000700"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000229"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000417"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/STATO_0000121"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000117>Orlaith Burke</ns3:IAO_0000117>
        <ns3:STATO_0000032 xml:lang="en"></ns3:STATO_0000032>
        <ns3:STATO_0000041>http://www.inside-r.org/packages/cran/nortest/docs/pearson.test

pearson.test(x)  function, where x is a numeric vector</ns3:STATO_0000041>
        <ns3:IAO_0000117 xml:lang="en">Alejandra Gonzalez-Beltran</ns3:IAO_0000117>
        <ns3:IAO_0000118 xml:lang="en">Chi2 test for independence</ns3:IAO_0000118>
        <ns3:IAO_0000115 xml:lang="en">Pearson&#39;s Chi-Squared test is a statistical null hypothesis test which is used to either evaluate goodness of fit of dataset to a Chi-Squared distribution or used to test independence  of 2 categorical variables (ie absence of association between those variables).</ns3:IAO_0000115>
        <ns3:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</ns3:IAO_0000117>
        <ns3:IAO_0000119 xml:lang="en">adapted from: 

http://stat.ethz.ch/R-manual/R-patched/library/stats/html/chisq.test.html

and 
http://en.wikipedia.org/wiki/Pearson&#39;s_chi-squared_test</ns3:IAO_0000119>
        <ns3:STATO_0000391 xml:lang="en">http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.chi2_contingency.html#scipy.stats.chi2_contingency</ns3:STATO_0000391>
        <ns3:STATO_0000041 xml:lang="en">http://stat.ethz.ch/R-manual/R-patched/library/stats/html/chisq.test.html

chisq.test(x, y = NULL, correct = TRUE,
           p = rep(1/length(x), length(x)), rescale.p = FALSE,
           simulate.p.value = FALSE, B = 2000)</ns3:STATO_0000041>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000121 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000121">
        <rdfs:label xml:lang="en">association between categorical variables testing objective</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000140 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000140">
        <rdfs:label xml:lang="en">contingency table</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000229 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000229">
        <rdfs:label xml:lang="en">Chi-square probability distribution</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000252 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000252">
        <rdfs:label xml:lang="en">categorical variable</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000700 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000700">
        <rdfs:label xml:lang="en">p-value</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000122 -->

    <Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
        <rdfs:label xml:lang="en">ready for release</rdfs:label>
    </Thing>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



