<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PSDO?iri=http://purl.obolibrary.org/obo/STATO_0000526"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns2="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000041"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000526 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000526">
        <rdfs:label xml:lang="en">numerator relationship matrix</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/STATO_0000642"/>
        <ns2:IAO_0000112>https://www.r-bloggers.com/setup-up-the-inverse-of-additive-relationship-matrix-in-r/</ns2:IAO_0000112>
        <ns2:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</ns2:IAO_0000117>
        <ns2:IAO_0000119>adapted from:
https://jvanderw.une.edu.au/Genetic_properties_of_the_animal_model.pdf
and from:
Henderson, C.R. 1976. A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values. Biometrics 32:69-83.
https://doi.org/10.2307/2529339</ns2:IAO_0000119>
        <ns2:STATO_0000041>https://rdrr.io/cran/sommer/man/A.mat.html</ns2:STATO_0000041>
        <ns2:IAO_0000118>A matrix</ns2:IAO_0000118>
        <ns2:IAO_0000115>the numerator relationship matrix is the matrix of *expected* additive genetic relationships between individuals. This matrix was originally used by Henderson (Henderson, C.R. 1976. A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values. Biometrics 32:69-83.) to account for covariances between random effects, and therefore to use information from relatives in estimation of breeding value. Among the properties of the NRM matrix (also known as the A matrix), it is symmetric, the diagonal value correspond to 1+ the inbreeding coefficient for an individual.</ns2:IAO_0000115>
        <ns2:STATO_0000032 xml:lang="en">NRM</ns2:STATO_0000032>
        <ns2:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000642 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000642">
        <rdfs:label>matrix</rdfs:label>
    </Class>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Individuals
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/IAO_0000122 -->

    <Thing rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#NamedIndividual"/>
        <rdfs:label xml:lang="en">ready for release</rdfs:label>
    </Thing>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



