<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/PSDO?iri=http://purl.obolibrary.org/obo/STATO_0000549"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
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     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000391"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000041"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032"/>
    


    <!-- 
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    <!-- 
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    <!-- http://purl.obolibrary.org/obo/OBI_0000417 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000417">
        <rdfs:label>achieves_planned_objective</rdfs:label>
    </ObjectProperty>
    


    <!-- 
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    //
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    <!-- http://purl.obolibrary.org/obo/IAO_0000078 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078"/>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200000 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000">
        <rdfs:label xml:lang="en">data transformation</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200175 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200175">
        <rdfs:label xml:lang="en">class discovery data transformation</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/OBI_0200178 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200178">
        <rdfs:label xml:lang="en">class discovery objective</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/STATO_0000549 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000549">
        <rdfs:label>random forest procedure</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200000"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200175"/>
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        </rdfs:subClassOf>
        <ns3:STATO_0000041># S3 method for formula
randomForest(formula, data=NULL, ..., subset, na.action=na.fail)
# S3 method for default
randomForest(x, y=NULL,  xtest=NULL, ytest=NULL, ntree=500,
             mtry=if (!is.null(y) &amp;&amp; !is.factor(y))
             max(floor(ncol(x)/3), 1) else floor(sqrt(ncol(x))),
             replace=TRUE, classwt=NULL, cutoff, strata,
             sampsize = if (replace) nrow(x) else ceiling(.632*nrow(x)),
             nodesize = if (!is.null(y) &amp;&amp; !is.factor(y)) 5 else 1,
             maxnodes = NULL,
             importance=FALSE, localImp=FALSE, nPerm=1,
             proximity, oob.prox=proximity,
             norm.votes=TRUE, do.trace=FALSE,
             keep.forest=!is.null(y) &amp;&amp; is.null(xtest), corr.bias=FALSE,
             keep.inbag=FALSE, ...)
# S3 method for randomForest
print(x, ...)


from https://www.rdocumentation.org/packages/randomForest/versions/4.6-14/topics/randomForest</ns3:STATO_0000041>
        <ns3:STATO_0000391>sklearn.ensemble.RandomForestRegressor(n_estimators=10, criterion=’mse’, max_depth=None, min_samples_split=2, min_samples_leaf=1, min_weight_fraction_leaf=0.0, max_features=’auto’, max_leaf_nodes=None, min_impurity_decrease=0.0, min_impurity_split=None, bootstrap=True, oob_score=False, n_jobs=1, random_state=None, verbose=0, warm_start=False)

from:
http://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestRegressor.html</ns3:STATO_0000391>
        <ns3:STATO_0000391>sklearn.ensemble.RandomForestClassifier(n_estimators=10, criterion=’gini’, max_depth=None, min_samples_split=2, min_samples_leaf=1, min_weight_fraction_leaf=0.0, max_features=’auto’, max_leaf_nodes=None, min_impurity_decrease=0.0, min_impurity_split=None, bootstrap=True, oob_score=False, n_jobs=1, random_state=None, verbose=0, warm_start=False, class_weight=None)

from:
http://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestClassifier.html</ns3:STATO_0000391>
        <ns3:STATO_0000032>random forest</ns3:STATO_0000032>
        <ns3:IAO_0000119>adapted from:
https://en.wikipedia.org/wiki/Random_forest
and http://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestRegressor.html</ns3:IAO_0000119>
        <ns3:IAO_0000117>Philippe Rocca-Serra</ns3:IAO_0000117>
        <ns3:IAO_0000115 xml:lang="en">random forest procedure is a type of data transformation used in classification and statistical learning using regression. The random forest procedure is a meta estimator that fits a number of classifying decision trees on various sub-samples of the dataset (it operates by constructing a multitude of decision trees at training time) and use averaging to improve the predictive accuracy and control over-fitting. The sub-sample size is always the same as the original input sample size but the samples are drawn with replacement if bootstrap=True (default). The random forest procedure outputs the class that is the mode of the classes (classification) or mean prediction (regression) of the individual trees.</ns3:IAO_0000115>
        <ns3:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
    </Class>
    


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    //
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    <!-- http://purl.obolibrary.org/obo/IAO_0000122 -->

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        <rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
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        <rdfs:label xml:lang="en">ready for release</rdfs:label>
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<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



