<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/SO?iri=http://purl.obolibrary.org/obo/SO_0000235"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:so="http://purl.obolibrary.org/obo/so#"
     xmlns:ns4="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/so#SOFA"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
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    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
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    <!-- http://purl.obolibrary.org/obo/so#part_of -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/so#part_of">
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
        <rdfs:label>part_of</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/SO_0000235 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0000235">
        <rdfs:label>TF_binding_site</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001055"/>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001654"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/so#part_of"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SO_0000727"/>
            </Restriction>
        </rdfs:subClassOf>
        <oboInOwl:id>SO:0000235</oboInOwl:id>
        <rdfs:comment>Definition updated along with definitions in Mejia-Almonte et.al PMID:32665585. Added relationship part_of SO:0000727 CRM in place of previous CRM relationship has_part TF_binding_site August 2020 in response to requests from GREEKC initiative. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527.</rdfs:comment>
        <oboInOwl:hasOBONamespace>sequence</oboInOwl:hasOBONamespace>
        <ns4:IAO_0000115>A DNA site where a transcription factor binds.</ns4:IAO_0000115>
        <oboInOwl:hasExactSynonym>TF binding site</oboInOwl:hasExactSynonym>
        <oboInOwl:hasExactSynonym>transcription factor binding site</oboInOwl:hasExactSynonym>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/so#SOFA"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/SO_0000727 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0000727">
        <rdfs:label>cis_regulatory_module</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/SO_0001055 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0001055">
        <rdfs:label>transcriptional_cis_regulatory_region</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/SO_0001654 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0001654">
        <rdfs:label>nucleotide_to_protein_binding_site</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



