<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/SO?iri=http://purl.obolibrary.org/obo/SO_0002286"?>
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     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
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     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
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    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
    


    <!-- 
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    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
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    <!-- http://purl.obolibrary.org/obo/SO_0000189 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0000189">
        <rdfs:label>non_LTR_retrotransposon</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/SO_0002286 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/SO_0002286">
        <rdfs:label>YR_retrotransposon</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000189"/>
        <ns3:IAO_0000115>Tyrosine Kinase (YR) retrotransposons are a subclass of non-LTR retrotransposons. These YR-encoding elements consist of central gag, pol and tyrosine recombinase (YR) open reading frames (ORFs) flanked with terminal repeat. The pol ORF includes a reverse transcriptase (RT), a RNase H (RH) and, in case of DIRS, a domain similar to bacterial and phage DNA N-6-adenine-methyltransferase (MT). Compared to the retroviral pol (LTR retrotransposons, non-LTR retrotransposons and Penelope elements), both aspartic protease and DDE integrase are absent from YR retrotransposons. YR retrotransposons have inverted terminal repeats (ITRs).</ns3:IAO_0000115>
        <oboInOwl:hasExactSynonym>YR retrotransposon</oboInOwl:hasExactSynonym>
        <rdfs:comment>Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488)</rdfs:comment>
        <oboInOwl:hasExactSynonym>tyrosine kinase retrotransposon</oboInOwl:hasExactSynonym>
        <oboInOwl:creation_date>2020-06-25T14:00:30Z</oboInOwl:creation_date>
        <oboInOwl:hasOBONamespace>sequence</oboInOwl:hasOBONamespace>
        <oboInOwl:id>SO:0002286</oboInOwl:id>
        <oboInOwl:created_by>david</oboInOwl:created_by>
    </Class>
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<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



