has_specified_output data transformation model parameter estimation model parameter estimate breeding value estimation genomic best linear unbiased prediction a data transformation which calculate predictions of breeding values using an animal model and a relationship matrix calculated from the genomic/genetic markers (G Matrix), in constrast to using Pedigree information as in BLUP, also known as ABLUP gblup(formula, data, M, lambda) where: formula: formula of the model, do not include the random effect due to animal (generally ID). data: data.frame with columns corresponding to ID and the columns mentioned in the formula. M: Matrix of marker genotypes, usually the count of one of the two SNP alleles at each markers (0, 1, or 2). lambda : Variance ratio (σ2e/σ2a) https://www.rdocumentation.org/packages/pedigree/versions/1.4/topics/gblup Philippe Rocca-Serra GBLUP adapted from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382275/ and from: https://www.rdocumentation.org/packages/pedigree/versions/1.4/topics/gblup and from estimated breeding value p-value ready for release