<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/SWO?iri=http://www.ebi.ac.uk/swo/SWO_0000013"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:swo="http://www.ebi.ac.uk/swo/"
     xmlns:edamontology="http://edamontology.org/"
     xmlns:ns3="http://purl.obolibrary.org/obo/"
     xmlns:objective="http://www.ebi.ac.uk/swo/objective/"
     xmlns:license="http://www.ebi.ac.uk/swo/license/"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:algorithm="http://www.ebi.ac.uk/swo/algorithm/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000086 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0000086">
        <rdfs:label>has specified data input</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000087 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0000087">
        <rdfs:label xml:lang="en">has specified data output</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000150 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0000150">
        <rdfs:label xml:lang="en">uses platform</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000740 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0000740">
        <rdfs:label>implements</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0004002 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0004002">
        <rdfs:label>has format specification</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0040005 -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0040005">
        <rdfs:label>is executed in</rdfs:label>
    </ObjectProperty>
    


    <!-- http://www.ebi.ac.uk/swo/has_license -->

    <ObjectProperty rdf:about="http://www.ebi.ac.uk/swo/has_license">
        <rdfs:label>has license</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Data properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://www.ebi.ac.uk/swo/SWO_0004006 -->

    <DatatypeProperty rdf:about="http://www.ebi.ac.uk/swo/SWO_0004006">
        <rdfs:label>has website homepage</rdfs:label>
    </DatatypeProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://edamontology.org/format_2585 -->

    <Class rdf:about="http://edamontology.org/format_2585">
        <rdfs:label>SBML</rdfs:label>
    </Class>
    


    <!-- http://edamontology.org/format_3239 -->

    <Class rdf:about="http://edamontology.org/format_3239">
        <rdfs:label>CopasiML</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/IAO_0000027 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
        <rdfs:label xml:lang="en">data item</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000001 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/SWO_0000001">
        <rdfs:label>software</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000013 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/SWO_0000013">
        <rdfs:label>COPASI</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000001"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000086"/>
                <someValuesFrom>
                    <Class>
                        <intersectionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
                            <Restriction>
                                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0004002"/>
                                <someValuesFrom rdf:resource="http://edamontology.org/format_3239"/>
                            </Restriction>
                        </intersectionOf>
                    </Class>
                </someValuesFrom>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000150"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000022"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000150"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/SWO_9000072"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000087"/>
                <someValuesFrom>
                    <Class>
                        <intersectionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
                            <Restriction>
                                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0004002"/>
                                <someValuesFrom rdf:resource="http://edamontology.org/format_2585"/>
                            </Restriction>
                        </intersectionOf>
                    </Class>
                </someValuesFrom>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000740"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/algorithm/SWO_4000007"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000740"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/algorithm/SWO_4000006"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/has_license"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/license/SWO_1000057"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0004006"/>
                <hasValue>http://www.copasi.org</hasValue>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/has_license"/>
                <allValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/license/SWO_1000057"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0040005"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/objective/SWO_4000008"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000150"/>
                <someValuesFrom rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000151"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0000086"/>
                <someValuesFrom>
                    <Class>
                        <intersectionOf rdf:parseType="Collection">
                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
                            <Restriction>
                                <onProperty rdf:resource="http://www.ebi.ac.uk/swo/SWO_0004002"/>
                                <someValuesFrom rdf:resource="http://edamontology.org/format_2585"/>
                            </Restriction>
                        </intersectionOf>
                    </Class>
                </someValuesFrom>
            </Restriction>
        </rdfs:subClassOf>
        <ns3:IAO_0000115>COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie&#39;s stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI provides an C++ API with language bindings for Perl, python, R, Java, and Octave and is able to communicate with the Systems Biology Workbench COPASI carries out several analyses of the network and its dynamics and has extensive support for parameter estimation and optimization. COPASI provides means to visualize data in customizable plots, histograms and animations of network diagrams. </ns3:IAO_0000115>
        <ns3:IAO_0000119>http://sbml.org/SBML_Software_Guide/SBML_Software_Summary, accessed 24 March 2015.</ns3:IAO_0000119>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000022 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/SWO_0000022">
        <rdfs:label>Linux</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_0000151 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/SWO_0000151">
        <rdfs:label xml:lang="en">OS X</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/SWO_9000072 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/SWO_9000072">
        <rdfs:label>Microsoft Windows</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/algorithm/SWO_4000006 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/algorithm/SWO_4000006">
        <rdfs:label xml:lang="en">ODE Algorithm</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/algorithm/SWO_4000007 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/algorithm/SWO_4000007">
        <rdfs:label>Gillespie&#39;s Stochastic Simulation Algorithm</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/license/SWO_1000057 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/license/SWO_1000057">
        <rdfs:label>Artistic License 2.0</rdfs:label>
    </Class>
    


    <!-- http://www.ebi.ac.uk/swo/objective/SWO_4000008 -->

    <Class rdf:about="http://www.ebi.ac.uk/swo/objective/SWO_4000008">
        <rdfs:label>simulation and analysis of biochemical networks</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



