has license has website homepage software RSeQC http://rseqc.sourceforge.net/ Mark Reuter Allyson Lister RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. Allyson Lister AL 21.10.2019: Added in reference to https://github.com/allysonlister/swo/issues/25 Mark Reuter Allyson Lister GNU GPL v3