<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/UPA?iri=http://purl.obolibrary.org/obo/UPa_UPA00034"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://purl.obolibrary.org/obo/upa#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:ns3="http://purl.obolibrary.org/obo/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/upa#uniprot_super_pathway"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/UPa_UPA00034 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UPa_UPA00034">
        <rdfs:label>L-lysine biosynthesis via DAP pathway</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UPa_UPA00404"/>
        <oboInOwl:hasDbXref>MetaCyc:PWY-2941</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>MetaCyc:PWY-2942</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym>L-lysine biosynthesis from aspartate</oboInOwl:hasExactSynonym>
        <oboInOwl:id>UPa:UPA00034</oboInOwl:id>
        <oboInOwl:hasDbXref>PMID:12948639</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym>L-lysine biosynthesis via diaminopimelate pathway</oboInOwl:hasExactSynonym>
        <oboInOwl:hasOBONamespace>pathway</oboInOwl:hasOBONamespace>
        <oboInOwl:hasDbXref>MetaCyc:DAPLYSINESYN-PWY</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map00300</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map01100</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map01120</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map01110</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>PMID:11910040</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>GO:0009089</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map00260</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>PMID:17579770</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>KEGG:map00270</oboInOwl:hasDbXref>
        <ns3:IAO_0000115>Biosynthesis of L-lysine through the diaminopimelate (DAP) pathway. &amp;lt;br&amp;gt; The L-lysine is synthesized from L-aspartate and pyruvate through diaminopimelate via four variants. &amp;lt;br&amp;gt; This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and higher plants.&amp;lt;br&amp;gt; In bacteria, DAP is not only a direct precursor of lysine, but it is also an important constituent of the cell wall peptidoglycan. &amp;lt;br&amp;gt; The DAP pathway is of special interest for pharmacology, since the absence of DAP in mammalian cells allows for the use of the DAP biosynthetic genes as a bacteria-specific drug target. &amp;lt;br&amp;gt; Most bacteria use only one of the four variants, although certain bacteria, such as &amp;lt;i&amp;gt;C. glutamicum &amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;Bacillus macerans&amp;lt;/i&amp;gt;, possess both the succinylase and dehydrogenase pathways.</ns3:IAO_0000115>
        <oboInOwl:hasDbXref>MetaCyc:PWY-5097</oboInOwl:hasDbXref>
        <oboInOwl:hasDbXref>PMID:9559056</oboInOwl:hasDbXref>
        <ns4:uniprot_super_pathway rdf:resource="http://purl.obolibrary.org/obo/UPa_UPA00402"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/UPa_UPA00402 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UPa_UPA00402">
        <rdfs:label>amino-acid biosynthesis</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/UPa_UPA00404 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/UPa_UPA00404">
        <rdfs:label>L-lysine biosynthesis</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



