Uberon multi-species anatomy ontology
Ontology: UBERON
- IRI: http://purl.obolibrary.org/obo/uberon.owl
- OBO Foundry: Library
- Download: http://purl.obolibrary.org/obo/uberon.owl
- Home: http://uberon.org
- Documentation: None
- Contact: Chris Mungall
- Help: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
- Description: An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies
Annotations
- comment: Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found.
- contributor: https://orcid.org/0000-0002-2061-091X, https://orcid.org/0000-0001-5889-4463, https://orcid.org/0000-0002-8688-6599, https://orcid.org/0000-0001-9990-8331, https://orcid.org/0000-0002-2244-7917, https://orcid.org/0000-0002-9900-7880, https://orcid.org/0000-0002-7073-9172, https://orcid.org/0000-0002-1112-5832, https://github.com/orgs/pato-ontology/teams/pato-community, https://www.wikidata.org/wiki/Q11695472, https://www.wikidata.org/wiki/Q23809253, https://www.wikidata.org/wiki/Q4964264, https://www.wikidata.org/wiki/Q54985720, https://www.wikidata.org/wiki/Q6983890, https://www.wikidata.org/wiki/Q7650732, https://www.wikidata.org/wiki/Q85793053, https://orcid.org/0000-0001-7433-0086, https://orcid.org/0000-0001-7476-6306, https://orcid.org/0000-0001-7920-5321, https://orcid.org/0000-0001-7958-3701, https://orcid.org/0000-0001-8682-8754, https://orcid.org/0000-0001-9107-0714, https://orcid.org/0000-0002-0819-0473, https://orcid.org/0000-0002-0956-8634, https://orcid.org/0000-0002-1572-1316, https://orcid.org/0000-0002-1604-3078, https://orcid.org/0000-0002-1615-2899, https://orcid.org/0000-0002-3437-3329, https://orcid.org/0000-0002-3467-2636, https://orcid.org/0000-0002-3734-1859, https://orcid.org/0000-0002-5111-7263, https://orcid.org/0000-0002-6490-7723, https://orcid.org/0000-0002-8406-3871, https://orcid.org/0000-0002-8455-3213, https://orcid.org/0000-0002-9415-5104, https://orcid.org/0000-0002-9818-3030, https://orcid.org/0000-0003-1980-3228, https://orcid.org/0000-0003-2105-2283, https://orcid.org/0000-0003-2338-2550, https://orcid.org/0000-0003-3691-0324, https://orcid.org/0000-0003-4423-4370
- creator: https://orcid.org/0000-0001-9114-8737, https://orcid.org/0000-0002-7356-1779, https://orcid.org/0000-0002-9611-1279, https://orcid.org/0000-0003-3162-7490, https://orcid.org/0000-0002-6601-2165, https://orcid.org/0000-0001-5839-6798, https://orcid.org/0000-0001-7972-3866, https://orcid.org/0000-0002-1810-9886, https://orcid.org/0000-0003-3308-6245
- description: Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
- title: Uber-anatomy ontology
- versionIRI: http://purl.obolibrary.org/obo/uberon/releases/2024-09-03/uberon.owl
- Git repository: https://github.com/cmungall/uberon/
- SVN repository: https://obo.svn.sourceforge.net/svnroot/obo/uberon/
- bug database: https://github.com/obophenotype/uberon/issues/
- default-namespace: uberon
- derived from resource: http://braininfo.rprc.washington.edu/; http://palaeos.com; http://purl.obolibrary.org/obo/cl.owl; http://purl.obolibrary.org/obo/hp.owl; http://purl.obolibrary.org/obo/zfa.owl; http://purl.obolibrary.org/obo/go.owl; http://purl.obolibrary.org/obo/bto.owl; http://purl.obolibrary.org/obo/caro.owl; http://purl.obolibrary.org/obo/fma.owl; http://purl.obolibrary.org/obo/mp.owl; http://www.ebi.ac.uk/efo/efo.owl; http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl; http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29; http://www.e-lico.eu/public/kupo/kupo.owl; http://dbpedia.org; http://www.brain-map.org; http://purl.obolibrary.org/obo/aao.owl; http://purl.obolibrary.org/obo/aba.owl; http://purl.obolibrary.org/obo/bila.owl; http://purl.obolibrary.org/obo/tao.owl; http://purl.obolibrary.org/obo/vhog.owl; http://purl.obolibrary.org/obo/vsao.owl; http://purl.obolibrary.org/obo/wbbt.owl; http://purl.obolibrary.org/obo/xao.owl; http://en.wikipedia.org/wiki/; http://uri.neuinfo.org/nif/nifstd; http://purl.obolibrary.org/obo/aeo.owl; http://purl.obolibrary.org/obo/ma.owl; http://purl.obolibrary.org/obo/ehdaa2.owl; http://purl.obolibrary.org/obo/emapa.owl; http://purl.obolibrary.org/obo/fbbt.owl; https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit; http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop; http://wiki.phenotypercn.org/wiki/August_2012_Notes; https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit; https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0; https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit; https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#; MESH; ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader; ISBN:0030229073 Invertebrate Zoology, Barnes; ISBN:0073040584 Vertebrates, Kardong; ISBN:0443065837 Human embryology, Larsen; ISBN:0683400088 Stedman's Medical Dictionary; ISBN:9780120749034 The laboratory rat; ISBN:9780878932504 Developmental Biology; ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher; aggregates AAO from 13:04:2012; aggregates TAO from 09:08:2012; aggregates VSAO from 16:07:2012; ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte; ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis; PMID:11433360 Placental development: lessons from mouse mutants; ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody; ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber; ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack; ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos; PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen; ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall
- has ontology root term: http://purl.obolibrary.org/obo/UBERON_0000104; http://purl.obolibrary.org/obo/UBERON_0001062
- has_obo_format_version: 1.2
- homepage: http://uberon.org
- is referenced by: http://genomebiology.com/2012/13/1/R5; http://www.ncbi.nlm.nih.gov/pubmed/22293552
- license: http://creativecommons.org/licenses/by/3.0/
- mailing list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
- publisher: http://uberon.org
- treat-xrefs-as-equivalent: GO; AEO; BILA; CARO; VSAO; OG; BSPO
- treat-xrefs-as-has-subclass: NCIT; EV; EHDAA; OGES; SCTID
- treat-xrefs-as-is_a: VHOG; BFO
- treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292; DHBA part_of NCBITaxon:9606; EHDAA2 part_of NCBITaxon:9606; EMAPA part_of NCBITaxon:10090; FBdv part_of NCBITaxon:7227; FMA part_of NCBITaxon:9606; HAO part_of NCBITaxon:7399; HBA part_of NCBITaxon:9606; HsapDv part_of NCBITaxon:9606; MA part_of NCBITaxon:10090; MFO part_of NCBITaxon:8089; MmusDv part_of NCBITaxon:10090; OlatDv part_of NCBITaxon:8089; PBA part_of NCBITaxon:9443; SPD part_of NCBITaxon:6893; TADS part_of NCBITaxon:6939; TAO part_of NCBITaxon:32443; TGMA part_of NCBITaxon:44484; WBbt part_of NCBITaxon:6237; WBls part_of NCBITaxon:6237; XAO part_of NCBITaxon:8353; ZFA part_of NCBITaxon:7954; ZFS part_of NCBITaxon:7954; KUPO part_of NCBITaxon:9606
Number of Terms (including imported terms) (Detailed Statistics)
- Class (26837)
- ObjectProperty (279)
- AnnotationProperty (264)
- Instance (67)
Top level terms and selected core terms
Number of SPARQL queries:8
