Mass spectrometry ontology
Ontology: MS
- IRI: http://purl.obolibrary.org/obo/ms.owl
- OBO Foundry: Library
- Download: http://purl.obolibrary.org/obo/ms.owl
- Home: http://www.psidev.info/groups/controlled-vocabularies
- Documentation: None
- Contact: Gerhard Mayer
- Help: psidev-ms-vocab@lists.sourceforge.net
- Description: A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.
Annotations
- comment: coverage of namespace-id: MS:$sequence(7,4000000,4999999)$: Mass spectrometry quality control metrics
- comment: creator: Julian Uszkoreit <julian.uszkoreit <-at-> ruhr-uni-bochum.de>
- comment: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
- comment: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
- comment: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
- comment: URL: http://purl.obolibrary.org/obo/ms/psi-ms.obo
- comment: creator: Nils Hoffmann < nils.hoffmann <-at-> cebitec.uni-bielefeld.de>
- comment: For any queries contact psidev-ms-vocab@lists.sourceforge.net
- comment: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
- comment: creator: Joshua Klein <jaklein <-at-> bu.edu>
- comment: creator: Mathias Walzer <walzer <-at-> ebi.ac.uk>
- comment: namespace: MS
- comment: namespace: PEFF
- comment: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
- comment: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
- comment: To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
- comment: coverage: Mass spectrometer output files and spectra interpretation
- comment: This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
- comment: creator: Yasset Perez-Riverol <yperez <-at-> ebi.ac.uk>
- comment: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
- comment: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
- comment: creator: Chris Bielow <chris.bielow <-at-> fu-berlin.de>
- comment: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
- comment: creator: Wout Bittremieux <wout.bittremieux <-at-> uantwerpen.be>
- comment: creator: Nithu Sara John <nithu <-at-> ebi.ac.uk>
- date: 31:10:2024 10:20
- versionIRI: http://purl.obolibrary.org/obo/ms/4.1.185/ms.owl
- default-namespace: MS
- has_obo_format_version: 1.2
- namespace-id-rule: * MS:$sequence(7,0,9999999)$; * PEFF:$sequence(7,0,9999999)$
- saved-by: Nithu Sara John
Number of Terms (including imported terms) (Detailed Statistics)
- Class (3625)
- ObjectProperty (12)
- AnnotationProperty (30)
Top level terms and selected core terms
- ambiguous residues
- binary data array
- binary data compression type
- binary data type
- chemical compound
- chemical compound attribute
- chemical compound formula
- chromatogram type
- Cleavage agent regular expression
- data file checksum type
- data file content
- data processing parameter
- data transformation
- detector acquisition mode
- detector attribute
- detector type
- dissociation method
- external reference identifier
- file format
- inlet type
- instrument model
- ion attribute
- ion chemical type
- ion optics
- ion reaction
- ion role
- ionization type
- laser attribute
- laser type
- m/z Separation Method
- MALDI matrix application
- mass analyzer attribute
- mass analyzer type
- mass spectrometry
- mass table options
- matrix application type
- measurement method
- modification parameters
- native spectrum identifier format
- object attribute
- peak
- peptide attribute
- peptide modification details
- polarity
- precursor activation attribute
- prefix
- protein attribute
- purgatory
- quantification data processing
- quantification information
- resolution type
- retention time window attribute
- scan direction
- Scan Function
- scan law
- scan polarity
- scanning method
- search input details
- sequential m/z separation method
- software
- source attribute
- spectra combination
- spectrum identification result details
- spectrum representation
- spectrum type
- standard
- target inclusion exclusion priority
- transition validation method
- unit
- unit
Number of SPARQL queries:8
