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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name OBO List of Terms
1 AEO Anatomical Entity Ontology L Excel XLSX format Tab Separated format
2 AGRO Agronomy Ontology L Excel XLSX format Tab Separated format
3 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) L Excel XLSX format Tab Separated format
4 AMPHX The Amphioxus Development and Anatomy Ontology L Excel XLSX format Tab Separated format
5 APO Ascomycete phenotype ontology L Excel XLSX format Tab Separated format
6 APOLLO_SV Apollo Structured Vocabulary L Excel XLSX format Tab Separated format
7 ARO Antibiotic Resistance Ontology L Excel XLSX format Tab Separated format
8 BAO BioAssay Ontology N Excel XLSX format Tab Separated format
9 BCGO Beta Cell Genomics Ontology L Excel XLSX format Tab Separated format
10 BCO Biological Collections Ontology L Excel XLSX format Tab Separated format
11 BFO Basic Formal Ontology F Excel XLSX format Tab Separated format
12 BFO11 Basic Formal Ontology (BFO) 1.1 L Excel XLSX format Tab Separated format
13 BSPO Biological Spatial Ontology L Excel XLSX format Tab Separated format
14 BTO BRENDA tissue / enzyme source L Excel XLSX format Tab Separated format
15 CARO Common Anatomy Reference Ontology L Excel XLSX format Tab Separated format
16 CDAO Comparative Data Analysis Ontology L Excel XLSX format Tab Separated format
17 CDNO Compositional Dietary Nutrition Ontology L Excel XLSX format Tab Separated format
18 CEPH Cephalopod Ontology L Excel XLSX format Tab Separated format
19 CHEBI Chemical Entities of Biological Interest F Excel XLSX format Tab Separated format
20 CHEMINF Chemical Information Ontology L Excel XLSX format Tab Separated format
21 CHIRO CHEBI Integrated Role Ontology L Excel XLSX format Tab Separated format
22 CHMO Chemical Methods Ontology L Excel XLSX format Tab Separated format
23 CIDO Coronavirus Infectious Disease Ontology L Excel XLSX format Tab Separated format
24 CIO Confidence Information Ontology L Excel XLSX format Tab Separated format
25 CL Cell Ontology L Excel XLSX format Tab Separated format
26 CLAO Collembola Anatomy Ontology L Excel XLSX format Tab Separated format
27 CLO Cell Line Ontology L Excel XLSX format Tab Separated format
28 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry N Excel XLSX format Tab Separated format
29 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource N Excel XLSX format Tab Separated format
30 CLYH Clytia hemisphaerica Development and Anatomy Ontology L Excel XLSX format Tab Separated format
31 CMF CranioMaxilloFacial ontology L Excel XLSX format Tab Separated format
32 CMO Clinical measurement ontology L Excel XLSX format Tab Separated format
33 COB Core Ontology for Biology and Biomedicine L Excel XLSX format Tab Separated format
34 COLAO Coleoptera Anatomy Ontology L Excel XLSX format Tab Separated format
35 CRO Contributor Role Ontology L Excel XLSX format Tab Separated format
36 CTCAE-OAEview OAE CTCAE view N Excel XLSX format Tab Separated format
37 CTENO Ctenophore Ontology L Excel XLSX format Tab Separated format
38 CTO CTO: Core Ontology of Clinical Trials L Excel XLSX format Tab Separated format
39 CVDO Cardiovascular Disease Ontology L Excel XLSX format Tab Separated format
40 d-acts Ontology of Document Acts N Excel XLSX format Tab Separated format
41 DDANAT Dictyostelium discoideum anatomy L Excel XLSX format Tab Separated format
42 DDPHENO Dictyostelium discoideum phenotype ontology L Excel XLSX format Tab Separated format
43 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology L Excel XLSX format Tab Separated format
44 DINTO The Drug-Drug Interactions Ontology L Excel XLSX format Tab Separated format
45 DOID Human Disease Ontology F Excel XLSX format Tab Separated format
46 DPO Drosophila Phenotype Ontology L Excel XLSX format Tab Separated format
47 DRON The Drug Ontology L Excel XLSX format Tab Separated format
48 DUO Data Use Ontology L Excel XLSX format Tab Separated format
49 ECAO The Echinoderm Anatomy and Development Ontology L Excel XLSX format Tab Separated format
50 ECO Evidence ontology L Excel XLSX format Tab Separated format
51 ECOCORE An ontology of core ecological entities L Excel XLSX format Tab Separated format
52 ECTO Environmental conditions, treatments and exposures ontology L Excel XLSX format Tab Separated format
53 EDAM EMBRACE Data and Methods N Excel XLSX format Tab Separated format
54 EFO Experimental Factor Ontology N Excel XLSX format Tab Separated format
55 EHDAA2 Human developmental anatomy, abstract L Excel XLSX format Tab Separated format
56 EMAPA Mouse Developmental Anatomy Ontology L Excel XLSX format Tab Separated format
57 ENVO Environment Ontology L Excel XLSX format Tab Separated format
58 EPIO Epilepsy Ontology L Excel XLSX format Tab Separated format
59 EPO Epidemiology Ontology L Excel XLSX format Tab Separated format
60 ERO eagle-i resource ontology L Excel XLSX format Tab Separated format
61 EUPATH VEuPathDB ontology L Excel XLSX format Tab Separated format
62 ExO Exposure ontology L Excel XLSX format Tab Separated format
63 FAO Fungal gross anatomy L Excel XLSX format Tab Separated format
64 FBBI Biological Imaging Methods Ontology L Excel XLSX format Tab Separated format
65 FBBT Drosophila gross anatomy L Excel XLSX format Tab Separated format
66 FBCV FlyBase Controlled Vocabulary L Excel XLSX format Tab Separated format
67 FBdv Drosophila development L Excel XLSX format Tab Separated format
68 FIDEO Food Interactions with Drugs Evidence Ontology L Excel XLSX format Tab Separated format
69 FIX Physico-chemical methods and properties L Excel XLSX format Tab Separated format
70 FLOPO Flora Phenotype Ontology L Excel XLSX format Tab Separated format
71 FMA Foundational Model of Anatomy Ontology (subset) L Excel XLSX format Tab Separated format
72 FOBI FOBI L Excel XLSX format Tab Separated format
73 FOODON FOODON L Excel XLSX format Tab Separated format
74 FOVT FuTRES Ontology of Vertebrate Traits L Excel XLSX format Tab Separated format
75 FYPO Fission Yeast Phenotype Ontology L Excel XLSX format Tab Separated format
76 GAZ Gazetteer L Excel XLSX format Tab Separated format
77 GECKO Genomics Cohorts Knowledge Ontology L Excel XLSX format Tab Separated format
78 GENEPIO Genomic Epidemiology Ontology L Excel XLSX format Tab Separated format
79 GENO Genotype Ontology L Excel XLSX format Tab Separated format
80 GEO Geographical Entity Ontology L Excel XLSX format Tab Separated format
81 GNO Glycan Naming and Subsumption Ontology (GNOme) L Excel XLSX format Tab Separated format
82 GO Gene Ontology F Excel XLSX format Tab Separated format
83 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology L Excel XLSX format Tab Separated format
84 HANCESTRO Human Ancestry Ontology L Excel XLSX format Tab Separated format
85 HAO Hymenoptera Anatomy Ontology L Excel XLSX format Tab Separated format
86 HINO Human Interaction Network Ontology N Excel XLSX format Tab Separated format
87 HOM Homology Ontology L Excel XLSX format Tab Separated format
88 HP Human Phenotype Ontology L Excel XLSX format Tab Separated format
89 HSAPDV Human Developmental Stages L Excel XLSX format Tab Separated format
90 HSO Health Surveillance Ontology L Excel XLSX format Tab Separated format
91 HTN Hypertension Ontology L Excel XLSX format Tab Separated format
92 IAO Information Artifact Ontology L Excel XLSX format Tab Separated format
93 IAO-Onto-Meta IAO Ontology Metadata N Excel XLSX format Tab Separated format
94 ICDO International Classification of Disease Ontology N Excel XLSX format Tab Separated format
95 ICEO Integrative and Conjugative Element Ontology L Excel XLSX format Tab Separated format
96 ICO Informed Consent Ontology L Excel XLSX format Tab Separated format
97 IDO Infectious Disease Ontology L Excel XLSX format Tab Separated format
98 IDOBRU Brucellosis Ontology N Excel XLSX format Tab Separated format
99 IDOMAL Malaria Ontology L Excel XLSX format Tab Separated format
100 INO Interaction Network Ontology L Excel XLSX format Tab Separated format
101 KISAO Kinetic Simulation Algorithm Ontology L Excel XLSX format Tab Separated format
102 KTAO Kidney Tissue Atlas Ontology N Excel XLSX format Tab Separated format
103 LABO clinical LABoratory Ontology L Excel XLSX format Tab Separated format
104 LINCS-CLOview CLO LINCS view N Excel XLSX format Tab Separated format
105 LTHIDO LTHIDO N Excel XLSX format Tab Separated format
106 MA Mouse adult gross anatomy L Excel XLSX format Tab Separated format
107 MAMO Mathematical modeling ontology L Excel XLSX format Tab Separated format
108 MAXO Medical Action Ontology L Excel XLSX format Tab Separated format
109 MCO Microbial Conditions Ontology L Excel XLSX format Tab Separated format
110 MF Mental Functioning Ontology L Excel XLSX format Tab Separated format
111 MFMO Mammalian Feeding Muscle Ontology L Excel XLSX format Tab Separated format
112 MFOEM Emotion Ontology L Excel XLSX format Tab Separated format
113 MFOMD Mental Disease Ontology L Excel XLSX format Tab Separated format
114 MI Molecular Interactions Controlled Vocabulary L Excel XLSX format Tab Separated format
115 MIAPA MIAPA Ontology L Excel XLSX format Tab Separated format
116 MicrO Ontology of Prokaryotic Phenotypic and Metabolic Characters L Excel XLSX format Tab Separated format
117 miRNAO microRNA Ontology L Excel XLSX format Tab Separated format
118 MIRO Mosquito insecticide resistance L Excel XLSX format Tab Separated format
119 MMO Measurement method ontology L Excel XLSX format Tab Separated format
120 MMUSDV Mouse Developmental Stages L Excel XLSX format Tab Separated format
121 MOD Protein modification L Excel XLSX format Tab Separated format
122 MONDO Mondo Disease Ontology L Excel XLSX format Tab Separated format
123 MOP Molecular Process Ontology L Excel XLSX format Tab Separated format
124 MP Mammalian Phenotype Ontology L Excel XLSX format Tab Separated format
125 MPATH Mouse pathology N Excel XLSX format Tab Separated format
126 MPIO Minimum PDDI Information Ontology L Excel XLSX format Tab Separated format
127 MRO MHC Restriction Ontology L Excel XLSX format Tab Separated format
128 MS Mass spectrometry ontology L Excel XLSX format Tab Separated format
129 NBO Neuro Behavior Ontology L Excel XLSX format Tab Separated format
130 NCBITaxon NCBI organismal classification L Excel XLSX format Tab Separated format
131 NCIT NCI Thesaurus OBO Edition L Excel XLSX format Tab Separated format
132 NCRO Non-Coding RNA Ontology L Excel XLSX format Tab Separated format
133 NDF-RT National Drug File Reference Terminology N Excel XLSX format Tab Separated format
134 NFO NFO N Excel XLSX format Tab Separated format
135 NOMEN NOMEN - A nomenclatural ontology for biological names L Excel XLSX format Tab Separated format
136 OAE Ontology of Adverse Events L Excel XLSX format Tab Separated format
137 OARCS Ontology of Arthropod Circulatory Systems L Excel XLSX format Tab Separated format
138 OBA Ontology of Biological Attributes L Excel XLSX format Tab Separated format
139 OBCS Ontology of Biological and Clinical Statistics L Excel XLSX format Tab Separated format
140 OBI Ontology for Biomedical Investigations F Excel XLSX format Tab Separated format
141 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view N Excel XLSX format Tab Separated format
142 OBIB Ontology for Biobanking L Excel XLSX format Tab Separated format
143 OBIws OBI web service, development version N Excel XLSX format Tab Separated format
144 OCE Ontology of Chemical Elements N Excel XLSX format Tab Separated format
145 OCMR Ontology of Chinese Medicine for Rheumatism N Excel XLSX format Tab Separated format
146 OCRe OCRe N Excel XLSX format Tab Separated format
147 OCVDAE Ontology of Cardiovascular Drug Adverse Events N Excel XLSX format Tab Separated format
148 ODAE Ontology of Drug Adverse Events N Excel XLSX format Tab Separated format
149 ODNAE Ontologyof Drug Neuropathy Adverse Events N Excel XLSX format Tab Separated format
150 OGG The Ontology of Genes and Genomes L Excel XLSX format Tab Separated format
151 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana N Excel XLSX format Tab Separated format
152 OGG-Bru Ontology of Genes and Genomes - Brucella N Excel XLSX format Tab Separated format
153 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans N Excel XLSX format Tab Separated format
154 OGG-Dm Ontology of Genes and Genomes - Fruit Fly N Excel XLSX format Tab Separated format
155 OGG-Dr Ontology of Genes and Genomes - Zebrafish N Excel XLSX format Tab Separated format
156 OGG-Mm Ontology of Genes and Genomes - Mouse N Excel XLSX format Tab Separated format
157 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum N Excel XLSX format Tab Separated format
158 OGG-Sc Ontology of Genes and Genomes - Yeast N Excel XLSX format Tab Separated format
159 OGI Ontology for genetic interval L Excel XLSX format Tab Separated format
160 OGMS Ontology for General Medical Science L Excel XLSX format Tab Separated format
161 OGSF Ontology of Genetic Susceptibility Factor L Excel XLSX format Tab Separated format
162 OHD The Oral Health and Disease Ontology L Excel XLSX format Tab Separated format
163 OHMI Ontology of Host-Microbiome Interactions L Excel XLSX format Tab Separated format
164 OHPI Ontology of Host Pathogen Interactions L Excel XLSX format Tab Separated format
165 OLATDV Medaka Developmental Stages L Excel XLSX format Tab Separated format
166 OLOBO Ontology for Linking Biological and Medical Ontologies N Excel XLSX format Tab Separated format
167 OMIABIS Ontologized MIABIS L Excel XLSX format Tab Separated format
168 OMIT Ontology for MIRNA Target L Excel XLSX format Tab Separated format
169 OMO OBO Metadata Ontology L Excel XLSX format Tab Separated format
170 OMP Ontology of Microbial Phenotypes L Excel XLSX format Tab Separated format
171 OMRSE Ontology of Medically Related Social Entities L Excel XLSX format Tab Separated format
172 ONE Ontology for Nutritional Epidemiology L Excel XLSX format Tab Separated format
173 ONS Ontology for Nutritional Studies L Excel XLSX format Tab Separated format
174 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform n Excel XLSX format Tab Separated format
175 ONTONEO Obstetric and Neonatal Ontology L Excel XLSX format Tab Separated format
176 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems L Excel XLSX format Tab Separated format
177 OPL Ontology for Parasite LifeCycle L Excel XLSX format Tab Separated format
178 OPMI Ontology of Precision Medicine and Investigation L Excel XLSX format Tab Separated format
179 ORNASEQ Ontology of RNA Sequencing L Excel XLSX format Tab Separated format
180 OSCI Ontology for Stem Cell Investigations N Excel XLSX format Tab Separated format
181 OVAE Ontology of Vaccine Adverse Events L Excel XLSX format Tab Separated format
182 PATO Phenotype And Trait Ontology F Excel XLSX format Tab Separated format
183 PCL Provisional Cell Ontology L Excel XLSX format Tab Separated format
184 PCO Population and Community Ontology L Excel XLSX format Tab Separated format
185 PDRO The Prescription of Drugs Ontology L Excel XLSX format Tab Separated format
186 PDUMDV Platynereis Developmental Stages L Excel XLSX format Tab Separated format
187 PECO Plant Experimental Conditions Ontology L Excel XLSX format Tab Separated format
188 PHIPO Pathogen Host Interaction Phenotype Ontology L Excel XLSX format Tab Separated format
189 PLANA planaria-ontology L Excel XLSX format Tab Separated format
190 PLANP Planarian Phenotype Ontology L Excel XLSX format Tab Separated format
191 PNO Proper Name Ontology N Excel XLSX format Tab Separated format
192 PO Plant Ontology F Excel XLSX format Tab Separated format
193 PORO Porifera Ontology L Excel XLSX format Tab Separated format
194 PPO Plant Phenology Ontology L Excel XLSX format Tab Separated format
195 PR PRotein Ontology (PRO) F Excel XLSX format Tab Separated format
196 PROCO Process Chemistry Ontology L Excel XLSX format Tab Separated format
197 PSDO Performance Summary Display Ontology L Excel XLSX format Tab Separated format
198 PSO Plant Stress Ontology L Excel XLSX format Tab Separated format
199 PW Pathway ontology L Excel XLSX format Tab Separated format
200 RBO Radiation Biology Ontology L Excel XLSX format Tab Separated format
201 REO Reagent Ontology N Excel XLSX format Tab Separated format
202 REX Physico-chemical process L Excel XLSX format Tab Separated format
203 RNAO RNA ontology L Excel XLSX format Tab Separated format
204 RO Relation Ontology L Excel XLSX format Tab Separated format
205 RS Rat Strain Ontology L Excel XLSX format Tab Separated format
206 RXNO Name Reaction Ontology L Excel XLSX format Tab Separated format
207 SBO Systems Biology Ontology L Excel XLSX format Tab Separated format
208 SCDO Sickle Cell Disease Ontology L Excel XLSX format Tab Separated format
209 SDGIO Sustainable Development Goals Interface Ontology N Excel XLSX format Tab Separated format
210 SEP Sample processing and separation techniques L Excel XLSX format Tab Separated format
211 SEPIO Scientific Evidence and Provenance Information Ontology L Excel XLSX format Tab Separated format
212 SIBO Social Insect Behavior Ontology L Excel XLSX format Tab Separated format
213 SIO Semanticscience Integrated Ontology N Excel XLSX format Tab Separated format
214 SO Sequence types and features ontology L Excel XLSX format Tab Separated format
215 SPD Spider Ontology L Excel XLSX format Tab Separated format
216 STATO The Statistical Methods Ontology L Excel XLSX format Tab Separated format
217 SWO Software ontology L Excel XLSX format Tab Separated format
218 SYMP Symptom Ontology L Excel XLSX format Tab Separated format
219 TADS Tick Anatomy Ontology L Excel XLSX format Tab Separated format
220 TAXRANK Taxonomic rank vocabulary L Excel XLSX format Tab Separated format
221 TGMA Mosquito gross anatomy ontology L Excel XLSX format Tab Separated format
222 TO Plant Trait Ontology L Excel XLSX format Tab Separated format
223 TRANS Pathogen Transmission Ontology L Excel XLSX format Tab Separated format
224 TSO Transportation System Ontology N Excel XLSX format Tab Separated format
225 TTO Teleost taxonomy ontology L Excel XLSX format Tab Separated format
226 TXPO Toxic Process Ontology L Excel XLSX format Tab Separated format
227 UBERON Uberon multi-species anatomy ontology L Excel XLSX format Tab Separated format
228 uberon-basic Uber anatomy ontology, basic version N Excel XLSX format Tab Separated format
229 uberon_collected_metazoa uberon_collected_metazoa N Excel XLSX format Tab Separated format
230 uberon_depictions uberon_depictions N Excel XLSX format Tab Separated format
231 UO Units of measurement ontology L Excel XLSX format Tab Separated format
232 UPA Unipathway L Excel XLSX format Tab Separated format
233 UPHENO Unified phenotype ontology (uPheno) L Excel XLSX format Tab Separated format
234 VariO Variation Ontology L Excel XLSX format Tab Separated format
235 VBO Vertebrate Breed Ontology L Excel XLSX format Tab Separated format
236 VICO Vaccination Informed Consent Ontology N Excel XLSX format Tab Separated format
237 VIDO Virus Infectious Disease Ontology N Excel XLSX format Tab Separated format
238 VIO Vaccine Investigation Ontology N Excel XLSX format Tab Separated format
239 VIVO-ISF VIVO-ISF N Excel XLSX format Tab Separated format
240 VO Vaccine Ontology L Excel XLSX format Tab Separated format
241 VT Vertebrate trait ontology L Excel XLSX format Tab Separated format
242 VTO Vertebrate Taxonomy Ontology L Excel XLSX format Tab Separated format
243 WBbt C. elegans Gross Anatomy Ontology L Excel XLSX format Tab Separated format
244 WBLS C. elegans development ontology L Excel XLSX format Tab Separated format
245 WBPhenotype C. elegans phenotype L Excel XLSX format Tab Separated format
246 XAO Xenopus Anatomy Ontology F Excel XLSX format Tab Separated format
247 XCO Experimental condition ontology L Excel XLSX format Tab Separated format
248 XL Cross-linker reagents ontology L Excel XLSX format Tab Separated format
249 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary L Excel XLSX format Tab Separated format
250 XPO Xenopus Phenotype Ontology L Excel XLSX format Tab Separated format
251 ZECO Zebrafish Experimental Conditions Ontology L Excel XLSX format Tab Separated format
252 ZFA Zebrafish anatomy and development ontology F Excel XLSX format Tab Separated format
253 ZFS Zebrafish developmental stages ontology L Excel XLSX format Tab Separated format
254 ZP Zebrafish Phenotype Ontology L Excel XLSX format Tab Separated format

Please cite the following reference for Ontobee:

Ong E, Xiang Z, Zhao B, Liu Y, Lin Y, Zheng J, Mungall C, Courtot M, Ruttenberg A, He Y. Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query, and integrationNucleic Acid Research. 2017 Jan 4;45(D1):D347-D352. PMID: 27733503. PMCID: PMC5210626.

Ontobee ICBO proceeding paper:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.